Wall clock time and date at job start Tue Mar 31 2020 16:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47081 * 2 1 4 4 N 1.46498 * 109.47302 * 179.97438 * 3 2 1 5 5 C 1.46500 * 120.00241 * 270.00133 * 4 3 2 6 6 C 1.52996 * 109.46830 * 263.16088 * 5 4 3 7 7 C 1.34781 * 119.99955 * 89.99756 * 4 3 2 8 8 O 1.21352 * 119.99794 * 4.13144 * 7 4 3 9 9 C 1.49445 * 119.99805 * 184.12746 * 7 4 3 10 10 O 1.21342 * 120.00634 * 354.27571 * 9 7 4 11 11 N 1.34781 * 119.99807 * 174.27827 * 9 7 4 12 12 C 1.46497 * 120.00051 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47432 * 324.99708 * 12 11 9 14 14 C 1.53005 * 109.47151 * 204.99527 * 12 11 9 15 15 C 1.50704 * 109.46884 * 64.99834 * 14 12 11 16 16 H 1.07998 * 119.99707 * 0.02562 * 15 14 12 17 17 C 1.37870 * 119.99738 * 179.72267 * 15 14 12 18 18 N 1.31514 * 120.00167 * 0.28002 * 17 15 14 19 19 Si 1.86803 * 120.00082 * 180.27443 * 17 15 14 20 20 H 1.48500 * 109.46771 * 89.99960 * 19 17 15 21 21 H 1.48490 * 109.47310 * 210.00097 * 19 17 15 22 22 H 1.48501 * 109.47080 * 330.00823 * 19 17 15 23 23 C 1.50698 * 109.47159 * 84.99745 * 12 11 9 24 24 C 1.38235 * 120.00331 * 39.72718 * 23 12 11 25 25 C 1.38232 * 120.00427 * 179.78985 * 24 23 12 26 26 C 1.38243 * 119.99762 * 0.43577 * 25 24 23 27 27 C 1.38236 * 119.99947 * 359.81740 * 26 25 24 28 28 C 1.38234 * 120.00070 * 219.99900 * 23 12 11 29 29 H 1.08992 * 109.47382 * 299.99932 * 1 2 3 30 30 H 1.08994 * 109.46848 * 60.00382 * 1 2 3 31 31 H 1.09004 * 109.46836 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47419 * 239.99958 * 2 1 3 33 33 H 1.08999 * 109.47481 * 119.99939 * 2 1 3 34 34 H 1.09002 * 109.47029 * 59.99719 * 3 2 1 35 35 H 1.08999 * 109.46913 * 300.00287 * 3 2 1 36 36 H 1.09005 * 109.46701 * 23.15739 * 5 4 3 37 37 H 1.09001 * 109.47081 * 143.16183 * 5 4 3 38 38 H 1.09000 * 109.47639 * 299.99465 * 6 5 4 39 39 H 1.09004 * 109.47526 * 59.99746 * 6 5 4 40 40 H 1.09007 * 109.47380 * 179.97438 * 6 5 4 41 41 H 0.97005 * 119.99999 * 359.97438 * 11 9 7 42 42 H 1.09001 * 109.46951 * 305.00037 * 14 12 11 43 43 H 1.08996 * 109.47037 * 184.99689 * 14 12 11 44 44 H 0.97000 * 119.99909 * 180.02562 * 18 17 15 45 45 H 1.08007 * 119.99824 * 359.97438 * 24 23 12 46 46 H 1.07998 * 120.00391 * 180.27379 * 25 24 23 47 47 H 1.08001 * 120.00125 * 179.83394 * 26 25 24 48 48 H 1.07999 * 119.99967 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.99963 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2370 1.4428 1.2696 6 6 4.6405 2.8750 1.6253 7 6 4.1794 1.4424 -1.1663 8 8 3.5754 1.5179 -2.2162 9 6 5.6709 1.3493 -1.1673 10 8 6.2815 1.3786 -0.1191 11 7 6.3381 1.2328 -2.3327 12 6 7.8002 1.1410 -2.3336 13 1 8.2036 1.7588 -1.5314 14 6 8.3412 1.6330 -3.6776 15 6 8.0337 3.0997 -3.8363 16 1 7.5056 3.6282 -3.0564 17 6 8.4320 3.7683 -4.9744 18 7 9.0754 3.1249 -5.9239 19 14 8.0576 5.5882 -5.1678 20 1 9.1773 6.3862 -4.6068 21 1 7.8937 5.9095 -6.6082 22 1 6.8042 5.9156 -4.4417 23 6 8.2136 -0.2924 -2.1201 24 6 7.5102 -1.3131 -2.7317 25 6 7.8921 -2.6277 -2.5394 26 6 8.9720 -2.9220 -1.7280 27 6 9.6722 -1.9015 -1.1121 28 6 9.2928 -0.5868 -1.3080 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.6000 1.0387 2.0565 37 1 5.1310 0.8266 1.1735 38 1 5.2775 3.2792 0.8385 39 1 3.7466 3.4913 1.7214 40 1 5.1848 2.8753 2.5698 41 1 5.8500 1.2090 -3.1707 42 1 7.8700 1.0734 -4.4857 43 1 9.4201 1.4821 -3.7121 44 1 9.3559 3.5954 -6.7244 45 1 6.6640 -1.0834 -3.3624 46 1 7.3452 -3.4249 -3.0208 47 1 9.2688 -3.9492 -1.5755 48 1 10.5156 -2.1315 -0.4780 49 1 9.8400 0.2105 -0.8270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325585624.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:57 Heat of formation + Delta-G solvation = -51.288723 kcal Electronic energy + Delta-G solvation = -29312.501297 eV Core-core repulsion = 25432.394001 eV Total energy + Delta-G solvation = -3880.107296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64937 -39.18839 -38.01739 -36.60567 -35.28446 -33.70739 -32.72222 -31.15502 -30.49658 -30.30130 -28.87432 -27.11787 -25.22045 -23.91028 -22.92673 -22.33963 -21.99260 -21.52990 -19.88354 -19.44017 -17.50136 -16.96409 -16.71422 -16.17720 -15.80921 -15.55419 -15.24550 -14.85590 -14.71492 -14.52772 -14.26745 -14.03794 -13.77047 -13.34171 -13.20716 -13.03319 -12.73835 -12.60637 -12.55365 -12.35565 -12.18336 -12.12660 -11.83950 -11.59060 -11.52396 -11.22482 -11.11651 -11.00416 -10.88570 -10.76474 -10.73283 -10.59919 -10.46878 -9.81723 -9.33105 -9.05658 -8.75514 -8.59252 -8.52895 -8.45000 -8.23663 -6.08802 -4.12528 1.71176 1.75934 1.77581 2.60558 3.29261 3.36074 3.40293 3.54411 3.76795 4.18099 4.41045 4.69003 4.79060 4.86028 4.97842 5.12740 5.22158 5.23693 5.24167 5.28483 5.32552 5.37161 5.48203 5.49107 5.54269 5.60854 5.76822 5.81708 5.86071 5.88577 5.91843 6.01606 6.07647 6.10864 6.28275 6.29514 6.37780 6.49618 6.50775 6.76860 6.80469 6.81476 7.03240 7.14513 7.35571 7.46390 7.52282 7.74907 7.86971 8.08676 8.23443 8.46546 8.92488 9.52939 11.01703 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.007805 B = 0.004520 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3586.795172 B = 6192.893727 C = 8403.287704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.111 3.889 4 N -0.589 5.589 5 C 0.093 3.907 6 C -0.159 4.159 7 C 0.506 3.494 8 O -0.519 6.519 9 C 0.502 3.498 10 O -0.524 6.524 11 N -0.665 5.665 12 C 0.183 3.817 13 H 0.092 0.908 14 C 0.023 3.977 15 C -0.523 4.523 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.074 4.074 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.133 4.133 27 C -0.123 4.123 28 C -0.106 4.106 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.065 0.935 41 H 0.413 0.587 42 H 0.027 0.973 43 H 0.038 0.962 44 H 0.262 0.738 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.075 -8.901 13.705 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C -0.011 4.011 4 N -0.323 5.323 5 C -0.029 4.029 6 C -0.217 4.217 7 C 0.289 3.711 8 O -0.395 6.395 9 C 0.283 3.717 10 O -0.403 6.403 11 N -0.315 5.315 12 C 0.079 3.921 13 H 0.110 0.890 14 C -0.014 4.014 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.075 4.075 24 C -0.126 4.126 25 C -0.142 4.142 26 C -0.151 4.151 27 C -0.141 4.141 28 C -0.125 4.125 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.134 0.866 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.249 0.751 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.135 0.865 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.869 -8.794 13.682 19.025 hybrid contribution -0.384 1.036 -0.587 1.251 sum -10.253 -7.759 13.095 18.352 Atomic orbital electron populations 1.21682 0.95037 1.01920 1.01951 1.21891 0.96198 0.97068 1.02675 1.21615 0.78807 0.97200 1.03471 1.47885 1.06525 1.71530 1.06393 1.22138 0.98087 0.99208 0.83487 1.22069 1.00975 0.96335 1.02352 1.20455 0.89032 0.77577 0.83999 1.90747 1.70009 1.47797 1.30914 1.19934 0.87869 0.78774 0.85141 1.90603 1.69267 1.49986 1.30396 1.45880 1.08228 1.69053 1.08324 1.20414 0.77767 0.90516 1.03360 0.89017 1.19415 0.97260 0.96412 0.88289 1.21106 1.37296 0.94080 1.03589 0.92421 1.24964 0.94918 0.98284 0.95809 1.69952 1.38720 1.36260 1.08032 0.86591 0.78810 0.85368 0.77285 1.20614 1.21172 1.19826 1.20478 0.95324 0.96247 0.95456 1.20956 0.99905 0.92376 0.99405 1.21051 0.97584 0.96335 0.99217 1.21015 0.96691 0.98703 0.98713 1.21044 0.99827 0.92916 1.00287 1.21001 0.96957 0.96459 0.98047 0.92676 0.92382 0.92475 0.91465 0.91816 0.90357 0.89579 0.91402 0.86571 0.91740 0.93524 0.91637 0.75066 0.95517 0.94409 0.92821 0.86490 0.86662 0.86786 0.86536 0.86065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.14 -1.35 6.26 -26.73 -0.17 -1.51 16 3 C 0.11 1.21 5.41 -4.04 -0.02 1.18 16 4 N -0.59 -7.85 2.49 -174.20 -0.43 -8.28 16 5 C 0.09 1.09 5.71 -4.04 -0.02 1.07 16 6 C -0.16 -1.89 9.74 37.16 0.36 -1.53 16 7 C 0.51 8.44 7.68 -11.59 -0.09 8.35 16 8 O -0.52 -9.71 16.05 5.50 0.09 -9.62 16 9 C 0.50 9.00 7.62 -11.59 -0.09 8.91 16 10 O -0.52 -9.54 11.52 5.50 0.06 -9.48 16 11 N -0.66 -12.56 4.01 -55.37 -0.22 -12.78 16 12 C 0.18 3.66 2.12 -69.08 -0.15 3.51 16 13 H 0.09 1.93 7.44 -51.93 -0.39 1.54 16 14 C 0.02 0.56 4.50 -27.88 -0.13 0.44 16 15 C -0.52 -13.94 8.84 -34.44 -0.30 -14.25 16 16 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 19 Si 0.89 21.40 29.54 -169.99 -5.02 16.37 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.07 -1.33 4.91 -104.63 -0.51 -1.85 16 24 C -0.11 -1.81 9.33 -39.58 -0.37 -2.18 16 25 C -0.12 -1.81 10.05 -39.58 -0.40 -2.21 16 26 C -0.13 -1.83 10.05 -39.58 -0.40 -2.22 16 27 C -0.12 -1.76 10.05 -39.58 -0.40 -2.15 16 28 C -0.11 -1.75 9.67 -39.58 -0.38 -2.14 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.67 8.07 -51.93 -0.42 0.25 16 35 H 0.09 1.05 7.37 -51.93 -0.38 0.66 16 36 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 37 H 0.12 1.60 5.38 -51.93 -0.28 1.32 16 38 H 0.06 0.95 7.05 -51.93 -0.37 0.59 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.41 7.89 8.09 -40.82 -0.33 7.56 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 45 H 0.12 1.92 7.71 -52.48 -0.40 1.51 16 46 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 47 H 0.11 1.25 8.06 -52.49 -0.42 0.82 16 48 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 49 H 0.12 1.89 8.04 -52.49 -0.42 1.47 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -30.26 406.16 -9.48 -39.74 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.02 Total: 8.65 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.79 Total: -5.73 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.08 Total: -46.05 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.15 Total: -19.10 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -30.26 -9.48 -39.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325585624.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.548 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds