Wall clock time and date at job start Tue Mar 31 2020 16:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47081 * 2 1 4 4 N 1.46498 * 109.47302 * 179.97438 * 3 2 1 5 5 C 1.46500 * 120.00241 * 270.00133 * 4 3 2 6 6 C 1.52996 * 109.46830 * 263.16088 * 5 4 3 7 7 C 1.34781 * 119.99955 * 89.99756 * 4 3 2 8 8 O 1.21352 * 119.99794 * 4.13144 * 7 4 3 9 9 C 1.49445 * 119.99805 * 184.12746 * 7 4 3 10 10 O 1.21342 * 120.00634 * 354.27571 * 9 7 4 11 11 N 1.34781 * 119.99807 * 174.27827 * 9 7 4 12 12 C 1.46497 * 120.00051 * 180.02562 * 11 9 7 13 13 H 1.08999 * 109.47432 * 324.99708 * 12 11 9 14 14 C 1.53005 * 109.47151 * 204.99527 * 12 11 9 15 15 C 1.50704 * 109.46884 * 64.99834 * 14 12 11 16 16 H 1.07998 * 119.99707 * 0.02562 * 15 14 12 17 17 C 1.37870 * 119.99738 * 179.72267 * 15 14 12 18 18 N 1.31514 * 120.00167 * 0.28002 * 17 15 14 19 19 Si 1.86803 * 120.00082 * 180.27443 * 17 15 14 20 20 H 1.48500 * 109.46771 * 89.99960 * 19 17 15 21 21 H 1.48490 * 109.47310 * 210.00097 * 19 17 15 22 22 H 1.48501 * 109.47080 * 330.00823 * 19 17 15 23 23 C 1.50698 * 109.47159 * 84.99745 * 12 11 9 24 24 C 1.38235 * 120.00331 * 39.72718 * 23 12 11 25 25 C 1.38232 * 120.00427 * 179.78985 * 24 23 12 26 26 C 1.38243 * 119.99762 * 0.43577 * 25 24 23 27 27 C 1.38236 * 119.99947 * 359.81740 * 26 25 24 28 28 C 1.38234 * 120.00070 * 219.99900 * 23 12 11 29 29 H 1.08992 * 109.47382 * 299.99932 * 1 2 3 30 30 H 1.08994 * 109.46848 * 60.00382 * 1 2 3 31 31 H 1.09004 * 109.46836 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47419 * 239.99958 * 2 1 3 33 33 H 1.08999 * 109.47481 * 119.99939 * 2 1 3 34 34 H 1.09002 * 109.47029 * 59.99719 * 3 2 1 35 35 H 1.08999 * 109.46913 * 300.00287 * 3 2 1 36 36 H 1.09005 * 109.46701 * 23.15739 * 5 4 3 37 37 H 1.09001 * 109.47081 * 143.16183 * 5 4 3 38 38 H 1.09000 * 109.47639 * 299.99465 * 6 5 4 39 39 H 1.09004 * 109.47526 * 59.99746 * 6 5 4 40 40 H 1.09007 * 109.47380 * 179.97438 * 6 5 4 41 41 H 0.97005 * 119.99999 * 359.97438 * 11 9 7 42 42 H 1.09001 * 109.46951 * 305.00037 * 14 12 11 43 43 H 1.08996 * 109.47037 * 184.99689 * 14 12 11 44 44 H 0.97000 * 119.99909 * 180.02562 * 18 17 15 45 45 H 1.08007 * 119.99824 * 359.97438 * 24 23 12 46 46 H 1.07998 * 120.00391 * 180.27379 * 25 24 23 47 47 H 1.08001 * 120.00125 * 179.83394 * 26 25 24 48 48 H 1.07999 * 119.99967 * 179.97438 * 27 26 25 49 49 H 1.07997 * 119.99963 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2370 1.4428 1.2696 6 6 4.6405 2.8750 1.6253 7 6 4.1794 1.4424 -1.1663 8 8 3.5754 1.5179 -2.2162 9 6 5.6709 1.3493 -1.1673 10 8 6.2815 1.3786 -0.1191 11 7 6.3381 1.2328 -2.3327 12 6 7.8002 1.1410 -2.3336 13 1 8.2036 1.7588 -1.5314 14 6 8.3412 1.6330 -3.6776 15 6 8.0337 3.0997 -3.8363 16 1 7.5056 3.6282 -3.0564 17 6 8.4320 3.7683 -4.9744 18 7 9.0754 3.1249 -5.9239 19 14 8.0576 5.5882 -5.1678 20 1 9.1773 6.3862 -4.6068 21 1 7.8937 5.9095 -6.6082 22 1 6.8042 5.9156 -4.4417 23 6 8.2136 -0.2924 -2.1201 24 6 7.5102 -1.3131 -2.7317 25 6 7.8921 -2.6277 -2.5394 26 6 8.9720 -2.9220 -1.7280 27 6 9.6722 -1.9015 -1.1121 28 6 9.2928 -0.5868 -1.3080 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.6000 1.0387 2.0565 37 1 5.1310 0.8266 1.1735 38 1 5.2775 3.2792 0.8385 39 1 3.7466 3.4913 1.7214 40 1 5.1848 2.8753 2.5698 41 1 5.8500 1.2090 -3.1707 42 1 7.8700 1.0734 -4.4857 43 1 9.4201 1.4821 -3.7121 44 1 9.3559 3.5954 -6.7244 45 1 6.6640 -1.0834 -3.3624 46 1 7.3452 -3.4249 -3.0208 47 1 9.2688 -3.9492 -1.5755 48 1 10.5156 -2.1315 -0.4780 49 1 9.8400 0.2105 -0.8270 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325585624.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:56 Heat of formation + Delta-G solvation = -67.352290 kcal Electronic energy + Delta-G solvation = -29313.197865 eV Core-core repulsion = 25432.394001 eV Total energy + Delta-G solvation = -3880.803865 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98596 -40.47955 -39.33731 -37.81776 -36.76410 -34.83012 -34.47742 -32.58736 -31.70434 -31.29269 -30.58966 -28.21009 -26.85348 -25.13997 -24.06865 -23.78447 -23.32751 -22.51371 -21.32824 -20.73292 -18.85319 -18.57234 -18.12835 -17.66477 -17.09783 -16.88904 -16.64624 -16.25353 -16.09031 -15.71525 -15.40671 -15.16617 -15.05294 -14.64501 -14.45690 -14.25649 -14.20073 -14.02511 -13.70848 -13.55531 -13.47134 -13.25897 -12.95896 -12.94302 -12.79139 -12.67469 -12.49253 -12.35405 -12.25081 -12.19456 -11.90402 -11.87984 -11.63873 -11.62686 -11.35668 -10.63686 -10.34676 -10.16685 -9.81187 -9.76387 -9.54304 -8.22961 -6.33037 0.38579 0.48436 0.55113 1.36383 1.37486 1.38199 1.48638 2.15862 2.37712 2.50087 2.95352 3.11169 3.37607 3.93057 3.96275 4.00235 4.01322 4.11141 4.20090 4.31823 4.35867 4.38331 4.40496 4.51614 4.60751 4.61609 4.66810 4.72705 4.76728 4.82344 4.90408 4.98171 5.10806 5.15016 5.16632 5.19315 5.19652 5.32964 5.36114 5.39564 5.50193 5.55276 5.60401 5.63893 5.74644 5.80608 5.97778 6.12605 6.17924 6.32574 6.72410 6.78946 7.00762 7.35841 8.87820 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.007805 B = 0.004520 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3586.795172 B = 6192.893727 C = 8403.287704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.107 3.893 4 N -0.577 5.577 5 C 0.091 3.909 6 C -0.155 4.155 7 C 0.504 3.496 8 O -0.549 6.549 9 C 0.500 3.500 10 O -0.528 6.528 11 N -0.671 5.671 12 C 0.200 3.800 13 H 0.075 0.925 14 C 0.037 3.963 15 C -0.532 4.532 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.924 5.924 19 Si 0.954 3.046 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.272 1.272 23 C -0.099 4.099 24 C -0.125 4.125 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.120 4.120 28 C -0.124 4.124 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.027 0.973 39 H 0.062 0.938 40 H 0.081 0.919 41 H 0.409 0.591 42 H 0.007 0.993 43 H 0.013 0.987 44 H 0.265 0.735 45 H 0.109 0.891 46 H 0.142 0.858 47 H 0.152 0.848 48 H 0.148 0.852 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 -9.947 15.997 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.173 4.173 3 C -0.014 4.014 4 N -0.309 5.309 5 C -0.030 4.030 6 C -0.213 4.213 7 C 0.286 3.714 8 O -0.427 6.427 9 C 0.281 3.719 10 O -0.407 6.407 11 N -0.320 5.320 12 C 0.096 3.904 13 H 0.093 0.907 14 C -0.001 4.001 15 C -0.570 4.570 16 H 0.070 0.930 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.779 3.221 20 H -0.197 1.197 21 H -0.206 1.206 22 H -0.197 1.197 23 C -0.100 4.100 24 C -0.144 4.144 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.138 4.138 28 C -0.143 4.143 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.245 0.755 42 H 0.026 0.974 43 H 0.031 0.969 44 H 0.073 0.927 45 H 0.128 0.872 46 H 0.160 0.840 47 H 0.170 0.830 48 H 0.166 0.834 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.984 -9.842 16.028 21.781 hybrid contribution -0.040 1.285 -1.206 1.763 sum -11.024 -8.557 14.823 20.358 Atomic orbital electron populations 1.21659 0.93306 1.02628 1.02570 1.21840 0.97619 0.95832 1.01988 1.21889 0.76846 0.98371 1.04342 1.48041 1.07752 1.69339 1.05794 1.22232 0.98167 0.99075 0.83549 1.22026 1.01167 0.96271 1.01812 1.20214 0.88224 0.78108 0.84829 1.90729 1.70106 1.49797 1.32056 1.20244 0.88771 0.78289 0.84601 1.90601 1.69764 1.49949 1.30337 1.45820 1.07738 1.69765 1.08700 1.19931 0.78360 0.92042 1.00058 0.90724 1.19149 0.95622 0.95136 0.90166 1.21393 1.36797 0.95438 1.03395 0.92979 1.25751 0.94813 1.02523 0.95578 1.70060 1.39813 1.37950 1.08572 0.85612 0.78699 0.80364 0.77387 1.19737 1.20559 1.19678 1.20334 0.96945 0.95025 0.97659 1.21038 1.00057 0.93459 0.99829 1.21396 0.98001 0.95803 0.99097 1.21480 0.95442 1.00402 0.96998 1.21416 1.00439 0.91832 1.00092 1.21175 0.96771 0.97999 0.98355 0.90816 0.93008 0.91764 0.94071 0.90573 0.86975 0.91162 0.87406 0.88566 0.95346 0.91936 0.89995 0.75519 0.97438 0.96865 0.92653 0.87244 0.84007 0.83018 0.83420 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.91 71.98 0.71 -1.18 16 2 C -0.13 -2.36 6.26 30.60 0.19 -2.16 16 3 C 0.11 2.12 5.41 86.38 0.47 2.59 16 4 N -0.58 -14.88 2.49 -823.39 -2.05 -16.93 16 5 C 0.09 1.98 5.71 86.38 0.49 2.48 16 6 C -0.15 -3.45 9.74 71.98 0.70 -2.75 16 7 C 0.50 17.24 7.68 87.27 0.67 17.91 16 8 O -0.55 -21.35 16.05 -3.25 -0.05 -21.40 16 9 C 0.50 18.72 7.62 87.27 0.67 19.38 16 10 O -0.53 -19.89 11.52 -3.22 -0.04 -19.93 16 11 N -0.67 -27.00 4.01 -447.44 -1.80 -28.79 16 12 C 0.20 8.53 2.12 44.25 0.09 8.62 16 13 H 0.07 3.37 7.44 -2.39 -0.02 3.35 16 14 C 0.04 1.87 4.50 29.85 0.13 2.01 16 15 C -0.53 -29.67 8.84 25.60 0.23 -29.44 16 16 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 17 C 0.01 0.69 5.46 84.65 0.46 1.16 16 18 N -0.92 -54.98 13.29 21.44 0.28 -54.70 16 19 Si 0.95 44.76 29.54 68.60 2.03 46.79 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 23 C -0.10 -3.69 4.91 -19.87 -0.10 -3.79 16 24 C -0.13 -4.31 9.33 22.27 0.21 -4.10 16 25 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 26 C -0.13 -3.08 10.05 22.27 0.22 -2.85 16 27 C -0.12 -3.20 10.05 22.27 0.22 -2.97 16 28 C -0.12 -4.15 9.67 22.27 0.22 -3.94 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.11 1.51 8.07 -2.39 -0.02 1.49 16 35 H 0.07 1.66 7.37 -2.39 -0.02 1.65 16 36 H 0.11 1.55 8.02 -2.38 -0.02 1.53 16 37 H 0.10 2.57 5.38 -2.42 -0.01 2.56 16 38 H 0.03 0.83 7.05 -2.39 -0.02 0.81 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 41 H 0.41 16.88 8.09 -92.70 -0.75 16.13 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 45 H 0.11 3.80 7.71 -2.91 -0.02 3.78 16 46 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 47 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 48 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 49 H 0.12 3.89 8.04 -2.91 -0.02 3.87 16 Total: -1.00 -68.52 406.16 4.37 -64.14 By element: Atomic # 1 Polarization: 32.93 SS G_CDS: 0.18 Total: 33.11 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 5.81 Total: -2.30 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -3.56 Total: -100.42 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.09 Total: -41.33 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -68.52 4.37 -64.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325585624.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.207 kcal (2) G-P(sol) polarization free energy of solvation -68.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds