Wall clock time and date at job start Tue Mar 31 2020 16:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 H 1.09005 * 109.47259 * 56.08365 * 3 2 1 5 5 O 1.42898 * 109.47283 * 296.08418 * 3 2 1 6 6 C 1.42899 * 114.00206 * 103.79005 * 5 3 2 7 7 C 1.50696 * 109.47496 * 176.08524 * 3 2 1 8 8 O 1.21280 * 120.00473 * 113.67227 * 7 3 2 9 9 N 1.34782 * 119.99725 * 293.67176 * 7 3 2 10 10 C 1.46501 * 119.99747 * 184.35023 * 9 7 3 11 11 C 1.52999 * 109.47011 * 185.85321 * 10 9 7 12 12 H 1.09002 * 109.43818 * 298.53439 * 11 10 9 13 13 C 1.50814 * 109.44164 * 178.62107 * 11 10 9 14 14 C 1.38841 * 117.80131 * 48.40543 * 13 11 10 15 15 C 1.37960 * 120.49791 * 179.50605 * 14 13 11 16 16 C 1.38263 * 119.72221 * 359.93072 * 15 14 13 17 17 C 1.37908 * 119.82748 * 0.26426 * 16 15 14 18 18 C 1.37666 * 122.34661 * 228.34661 * 13 11 10 19 19 C 1.50599 * 122.86164 * 1.50861 * 18 13 11 20 20 C 1.52782 * 110.85355 * 339.80701 * 19 18 13 21 21 N 1.46683 * 109.43961 * 58.41010 * 11 10 9 22 22 C 1.36938 * 121.33261 * 344.47661 * 21 11 10 23 23 H 1.07995 * 119.99881 * 43.71725 * 22 21 11 24 24 C 1.38814 * 119.99819 * 223.71554 * 22 21 11 25 25 N 1.31623 * 119.99570 * 205.97345 * 24 22 21 26 26 Si 1.86796 * 120.00285 * 25.96754 * 24 22 21 27 27 H 1.48509 * 109.46812 * 95.04658 * 26 24 22 28 28 H 1.48493 * 109.47274 * 215.04258 * 26 24 22 29 29 H 1.48504 * 109.47291 * 335.05096 * 26 24 22 30 30 H 1.09001 * 109.47112 * 65.89154 * 1 2 3 31 31 H 1.09000 * 109.46804 * 185.89007 * 1 2 3 32 32 H 1.08993 * 109.47215 * 305.88461 * 1 2 3 33 33 H 1.09003 * 109.47526 * 240.00011 * 2 1 3 34 34 H 1.09003 * 109.47318 * 119.99800 * 2 1 3 35 35 H 1.09000 * 109.47186 * 54.99928 * 6 5 3 36 36 H 1.09000 * 109.47363 * 174.99983 * 6 5 3 37 37 H 1.09000 * 109.46995 * 295.00392 * 6 5 3 38 38 H 0.96993 * 119.99973 * 4.34946 * 9 7 3 39 39 H 1.09001 * 109.47562 * 305.84657 * 10 9 7 40 40 H 1.08997 * 109.47565 * 65.85324 * 10 9 7 41 41 H 1.07995 * 119.74792 * 359.48845 * 14 13 11 42 42 H 1.08003 * 120.13283 * 179.90523 * 15 14 13 43 43 H 1.07994 * 120.08864 * 180.24445 * 16 15 14 44 44 H 1.07997 * 119.71507 * 180.02562 * 17 16 15 45 45 H 1.08999 * 109.20048 * 100.15889 * 19 18 13 46 46 H 1.08999 * 109.20208 * 219.45029 * 19 18 13 47 47 H 1.09006 * 109.77177 * 167.07712 * 20 19 18 48 48 H 1.08995 * 109.77571 * 287.80878 * 20 19 18 49 49 H 0.97002 * 119.99506 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6204 1.9762 0.8528 5 8 1.6402 2.0891 -1.2100 6 6 0.5449 2.9930 -1.0516 7 6 3.5438 1.4437 0.0970 8 8 4.2112 1.8439 -0.8332 9 7 4.1471 1.0000 1.2176 10 6 5.6034 1.0895 1.3499 11 6 6.0422 0.3911 2.6386 12 1 5.5896 0.8916 3.4946 13 6 7.5444 0.4541 2.7571 14 6 8.1588 1.6829 2.5569 15 6 9.5289 1.8061 2.6620 16 6 10.2952 0.6973 2.9704 17 6 9.6863 -0.5246 3.1654 18 6 8.3068 -0.6530 3.0540 19 6 7.7149 -2.0235 3.2527 20 6 6.2246 -1.9306 3.5759 21 7 5.6076 -1.0095 2.6071 22 6 4.6657 -1.4429 1.7126 23 1 4.7127 -1.1237 0.6819 24 6 3.6507 -2.2925 2.1305 25 7 3.0736 -3.1024 1.2682 26 14 3.1038 -2.2866 3.9166 27 1 1.9315 -1.3882 4.0723 28 1 2.7289 -3.6644 4.3241 29 1 4.2159 -1.8022 4.7733 30 1 -0.3633 0.4198 -0.9380 31 1 -0.3633 -1.0223 0.1055 32 1 -0.3633 0.6023 0.8326 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.7855 3.7236 -0.2793 36 1 0.3597 3.5083 -1.9941 37 1 -0.3461 2.4367 -0.7605 38 1 3.6171 0.6216 1.9364 39 1 6.0763 0.6056 0.4954 40 1 5.9014 2.1374 1.3850 41 1 7.5597 2.5488 2.3169 42 1 10.0009 2.7645 2.5036 43 1 11.3677 0.7877 3.0580 44 1 10.2865 -1.3894 3.4067 45 1 7.8485 -2.6072 2.3419 46 1 8.2298 -2.5206 4.0749 47 1 5.7667 -2.9162 3.4907 48 1 6.0898 -1.5478 4.5875 49 1 2.3646 -3.6964 1.5604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328465371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:14 Heat of formation + Delta-G solvation = -27.923311 kcal Electronic energy + Delta-G solvation = -30343.638801 eV Core-core repulsion = 26464.544706 eV Total energy + Delta-G solvation = -3879.094096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.89367 -39.23095 -37.37392 -36.35736 -34.19238 -33.05513 -32.51060 -31.88667 -30.47889 -29.09483 -28.08493 -26.67224 -25.51216 -24.28995 -22.92466 -22.01883 -21.64877 -20.93807 -19.77436 -19.24796 -17.23591 -16.67019 -16.34849 -16.09824 -15.66238 -15.39977 -15.05170 -14.70350 -14.61221 -14.23370 -14.15740 -13.76843 -13.50753 -13.37496 -13.08707 -12.89582 -12.82413 -12.43326 -12.42546 -12.18348 -12.00277 -11.96094 -11.52131 -11.44416 -11.33451 -11.16643 -11.09604 -10.95740 -10.80457 -10.55439 -10.33869 -10.10919 -9.94501 -9.70057 -9.66629 -8.82541 -8.66718 -8.46273 -8.18292 -8.16446 -6.83212 -6.14368 -3.59937 1.67741 1.71257 3.20721 3.26736 3.36862 3.40751 3.52799 4.07061 4.38141 4.40726 4.74339 5.08226 5.10990 5.14002 5.22899 5.26077 5.27647 5.28863 5.42963 5.48269 5.49981 5.56977 5.65297 5.68528 5.73476 5.83969 5.89185 5.93666 5.98650 6.04240 6.04923 6.12701 6.22421 6.35087 6.41880 6.42927 6.50405 6.60040 6.65714 6.76471 6.81347 6.83152 6.86454 7.08666 7.18274 7.34048 7.35545 7.88932 8.29264 8.33286 8.81363 8.96041 9.53835 10.03491 10.97608 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004883 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.772165 B = 5732.258682 C = 7588.678736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.077 3.923 4 H 0.078 0.922 5 O -0.358 6.358 6 C 0.027 3.973 7 C 0.508 3.492 8 O -0.545 6.545 9 N -0.691 5.691 10 C 0.142 3.858 11 C 0.193 3.807 12 H 0.047 0.953 13 C -0.077 4.077 14 C -0.118 4.118 15 C -0.132 4.132 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.050 4.050 19 C -0.103 4.103 20 C 0.143 3.857 21 N -0.597 5.597 22 C -0.271 4.271 23 H 0.085 0.915 24 C 0.050 3.950 25 N -0.877 5.877 26 Si 0.839 3.161 27 H -0.288 1.288 28 H -0.294 1.294 29 H -0.255 1.255 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.038 0.962 36 H 0.083 0.917 37 H 0.043 0.957 38 H 0.409 0.591 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.033 0.967 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 8.170 4.679 9.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.016 3.984 4 H 0.095 0.905 5 O -0.276 6.276 6 C -0.070 4.070 7 C 0.293 3.707 8 O -0.423 6.423 9 N -0.344 5.344 10 C 0.018 3.982 11 C 0.087 3.913 12 H 0.064 0.936 13 C -0.079 4.079 14 C -0.137 4.137 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.147 4.147 18 C -0.050 4.050 19 C -0.141 4.141 20 C 0.018 3.982 21 N -0.322 5.322 22 C -0.399 4.399 23 H 0.103 0.897 24 C -0.153 4.153 25 N -0.516 5.516 26 Si 0.666 3.334 27 H -0.215 1.215 28 H -0.221 1.221 29 H -0.180 1.180 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.247 0.753 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.096 0.904 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.051 0.949 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.393 8.282 3.774 9.411 hybrid contribution -0.702 -0.324 1.603 1.780 sum 1.691 7.958 5.377 9.752 Atomic orbital electron populations 1.21771 0.95958 1.01897 1.00803 1.21906 0.95776 0.93731 1.05730 1.22081 0.92533 0.95624 0.88188 0.90453 1.88020 1.50541 1.58967 1.30037 1.22915 0.89483 0.92501 1.02069 1.20394 0.89631 0.77951 0.82721 1.90642 1.66089 1.48042 1.37499 1.45906 1.07838 1.61280 1.19374 1.21226 0.80789 0.98071 0.98160 1.19641 0.88458 0.87838 0.95363 0.93591 1.20098 0.96511 0.92642 0.98656 1.21151 0.94796 0.97175 1.00546 1.20952 0.94007 0.98353 1.01655 1.20942 0.99210 0.93193 1.01252 1.21178 0.94334 0.97401 1.01836 1.19596 0.92671 0.95355 0.97401 1.21041 0.98799 0.92791 1.01518 1.21347 0.89860 0.94868 0.92121 1.44269 1.45542 1.01633 1.40732 1.18774 1.02590 1.27713 0.90846 0.89713 1.25595 0.96573 0.96934 0.96170 1.69958 1.25974 1.20769 1.34868 0.87437 0.79830 0.77244 0.88918 1.21464 1.22066 1.17962 0.92809 0.92208 0.93500 0.90261 0.88431 0.94332 0.89802 0.93803 0.75293 0.91041 0.92563 0.86252 0.86648 0.86810 0.86736 0.90423 0.92066 0.91176 0.94934 0.92595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.85 37.15 0.33 -1.83 16 2 C -0.13 -2.40 5.62 -26.73 -0.15 -2.55 16 3 C 0.08 1.33 2.68 -27.89 -0.07 1.26 16 4 H 0.08 1.12 7.60 -51.93 -0.39 0.72 16 5 O -0.36 -6.27 9.60 -55.06 -0.53 -6.80 16 6 C 0.03 0.34 10.47 101.05 1.06 1.39 16 7 C 0.51 10.28 7.16 -10.99 -0.08 10.20 16 8 O -0.54 -12.95 16.48 -14.27 -0.24 -13.18 16 9 N -0.69 -13.15 3.49 -60.30 -0.21 -13.36 16 10 C 0.14 2.65 4.15 -4.04 -0.02 2.63 16 11 C 0.19 3.54 3.07 -68.93 -0.21 3.33 16 12 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 13 C -0.08 -1.32 5.44 -104.55 -0.57 -1.89 16 14 C -0.12 -1.77 9.06 -39.46 -0.36 -2.13 16 15 C -0.13 -1.77 10.05 -39.67 -0.40 -2.17 16 16 C -0.13 -1.70 10.04 -39.69 -0.40 -2.10 16 17 C -0.13 -1.88 9.59 -39.43 -0.38 -2.26 16 18 C -0.05 -0.84 5.76 -104.60 -0.60 -1.44 16 19 C -0.10 -1.75 5.86 -28.04 -0.16 -1.91 16 20 C 0.14 2.79 4.39 -3.75 -0.02 2.77 16 21 N -0.60 -12.44 2.38 -166.32 -0.40 -12.84 16 22 C -0.27 -6.44 6.81 -15.06 -0.10 -6.54 16 23 H 0.09 2.31 6.56 -52.49 -0.34 1.96 16 24 C 0.05 1.23 4.58 -17.43 -0.08 1.15 16 25 N -0.88 -23.24 13.97 55.49 0.78 -22.46 16 26 Si 0.84 18.60 26.78 -169.99 -4.55 14.05 16 27 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.26 -5.43 5.06 56.52 0.29 -5.14 16 30 H 0.05 0.73 6.86 -51.93 -0.36 0.38 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 34 H 0.10 1.95 7.30 -51.93 -0.38 1.57 16 35 H 0.04 0.43 8.03 -51.93 -0.42 0.01 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.04 0.48 6.34 -51.93 -0.33 0.15 16 38 H 0.41 7.72 6.88 -40.82 -0.28 7.44 16 39 H 0.07 1.55 7.83 -51.93 -0.41 1.14 16 40 H 0.06 0.95 6.69 -51.93 -0.35 0.60 16 41 H 0.12 1.60 6.70 -52.49 -0.35 1.25 16 42 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 43 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.11 1.43 8.05 -52.49 -0.42 1.01 16 45 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 47 H 0.07 1.46 6.29 -51.93 -0.33 1.13 16 48 H 0.03 0.62 7.10 -51.93 -0.37 0.25 16 49 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 379.17 15.07 5.71 5.71 Total: -1.00 -29.27 379.17 -9.42 -38.70 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -7.78 Total: 12.25 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.21 Total: -2.07 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.17 Total: -48.66 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.76 Total: -19.98 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -4.55 Total: 14.05 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.27 -9.42 -38.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328465371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.775 kcal (2) G-P(sol) polarization free energy of solvation -29.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds