Wall clock time and date at job start Tue Mar 31 2020 16:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47079 * 2 1 4 4 H 1.09005 * 109.47259 * 56.08365 * 3 2 1 5 5 O 1.42898 * 109.47283 * 296.08418 * 3 2 1 6 6 C 1.42899 * 114.00206 * 103.79005 * 5 3 2 7 7 C 1.50696 * 109.47496 * 176.08524 * 3 2 1 8 8 O 1.21280 * 120.00473 * 113.67227 * 7 3 2 9 9 N 1.34782 * 119.99725 * 293.67176 * 7 3 2 10 10 C 1.46501 * 119.99747 * 184.35023 * 9 7 3 11 11 C 1.52999 * 109.47011 * 185.85321 * 10 9 7 12 12 H 1.09002 * 109.43818 * 298.53439 * 11 10 9 13 13 C 1.50814 * 109.44164 * 178.62107 * 11 10 9 14 14 C 1.38841 * 117.80131 * 48.40543 * 13 11 10 15 15 C 1.37960 * 120.49791 * 179.50605 * 14 13 11 16 16 C 1.38263 * 119.72221 * 359.93072 * 15 14 13 17 17 C 1.37908 * 119.82748 * 0.26426 * 16 15 14 18 18 C 1.37666 * 122.34661 * 228.34661 * 13 11 10 19 19 C 1.50599 * 122.86164 * 1.50861 * 18 13 11 20 20 C 1.52782 * 110.85355 * 339.80701 * 19 18 13 21 21 N 1.46683 * 109.43961 * 58.41010 * 11 10 9 22 22 C 1.36938 * 121.33261 * 344.47661 * 21 11 10 23 23 H 1.07995 * 119.99881 * 43.71725 * 22 21 11 24 24 C 1.38814 * 119.99819 * 223.71554 * 22 21 11 25 25 N 1.31623 * 119.99570 * 205.97345 * 24 22 21 26 26 Si 1.86796 * 120.00285 * 25.96754 * 24 22 21 27 27 H 1.48509 * 109.46812 * 95.04658 * 26 24 22 28 28 H 1.48493 * 109.47274 * 215.04258 * 26 24 22 29 29 H 1.48504 * 109.47291 * 335.05096 * 26 24 22 30 30 H 1.09001 * 109.47112 * 65.89154 * 1 2 3 31 31 H 1.09000 * 109.46804 * 185.89007 * 1 2 3 32 32 H 1.08993 * 109.47215 * 305.88461 * 1 2 3 33 33 H 1.09003 * 109.47526 * 240.00011 * 2 1 3 34 34 H 1.09003 * 109.47318 * 119.99800 * 2 1 3 35 35 H 1.09000 * 109.47186 * 54.99928 * 6 5 3 36 36 H 1.09000 * 109.47363 * 174.99983 * 6 5 3 37 37 H 1.09000 * 109.46995 * 295.00392 * 6 5 3 38 38 H 0.96993 * 119.99973 * 4.34946 * 9 7 3 39 39 H 1.09001 * 109.47562 * 305.84657 * 10 9 7 40 40 H 1.08997 * 109.47565 * 65.85324 * 10 9 7 41 41 H 1.07995 * 119.74792 * 359.48845 * 14 13 11 42 42 H 1.08003 * 120.13283 * 179.90523 * 15 14 13 43 43 H 1.07994 * 120.08864 * 180.24445 * 16 15 14 44 44 H 1.07997 * 119.71507 * 180.02562 * 17 16 15 45 45 H 1.08999 * 109.20048 * 100.15889 * 19 18 13 46 46 H 1.08999 * 109.20208 * 219.45029 * 19 18 13 47 47 H 1.09006 * 109.77177 * 167.07712 * 20 19 18 48 48 H 1.08995 * 109.77571 * 287.80878 * 20 19 18 49 49 H 0.97002 * 119.99506 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6204 1.9762 0.8528 5 8 1.6402 2.0891 -1.2100 6 6 0.5449 2.9930 -1.0516 7 6 3.5438 1.4437 0.0970 8 8 4.2112 1.8439 -0.8332 9 7 4.1471 1.0000 1.2176 10 6 5.6034 1.0895 1.3499 11 6 6.0422 0.3911 2.6386 12 1 5.5896 0.8916 3.4946 13 6 7.5444 0.4541 2.7571 14 6 8.1588 1.6829 2.5569 15 6 9.5289 1.8061 2.6620 16 6 10.2952 0.6973 2.9704 17 6 9.6863 -0.5246 3.1654 18 6 8.3068 -0.6530 3.0540 19 6 7.7149 -2.0235 3.2527 20 6 6.2246 -1.9306 3.5759 21 7 5.6076 -1.0095 2.6071 22 6 4.6657 -1.4429 1.7126 23 1 4.7127 -1.1237 0.6819 24 6 3.6507 -2.2925 2.1305 25 7 3.0736 -3.1024 1.2682 26 14 3.1038 -2.2866 3.9166 27 1 1.9315 -1.3882 4.0723 28 1 2.7289 -3.6644 4.3241 29 1 4.2159 -1.8022 4.7733 30 1 -0.3633 0.4198 -0.9380 31 1 -0.3633 -1.0223 0.1055 32 1 -0.3633 0.6023 0.8326 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.7855 3.7236 -0.2793 36 1 0.3597 3.5083 -1.9941 37 1 -0.3461 2.4367 -0.7605 38 1 3.6171 0.6216 1.9364 39 1 6.0763 0.6056 0.4954 40 1 5.9014 2.1374 1.3850 41 1 7.5597 2.5488 2.3169 42 1 10.0009 2.7645 2.5036 43 1 11.3677 0.7877 3.0580 44 1 10.2865 -1.3894 3.4067 45 1 7.8485 -2.6072 2.3419 46 1 8.2298 -2.5206 4.0749 47 1 5.7667 -2.9162 3.4907 48 1 6.0898 -1.5478 4.5875 49 1 2.3646 -3.6964 1.5604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328465371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:13 Heat of formation + Delta-G solvation = -44.413080 kcal Electronic energy + Delta-G solvation = -30344.353851 eV Core-core repulsion = 26464.544706 eV Total energy + Delta-G solvation = -3879.809146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.31456 -40.61420 -38.73557 -37.84810 -35.74239 -34.48427 -34.18788 -33.26115 -31.98639 -30.38811 -29.35845 -28.06949 -26.84162 -25.77234 -24.29264 -23.46341 -23.04164 -22.27557 -21.33085 -20.69150 -18.81425 -18.04709 -17.94427 -17.33032 -17.21882 -16.81558 -16.39080 -16.28456 -16.01636 -15.60943 -15.44243 -15.19695 -14.90219 -14.79632 -14.66189 -14.21389 -14.16295 -13.92232 -13.81278 -13.50937 -13.47681 -13.37222 -12.90158 -12.81012 -12.64047 -12.57707 -12.51138 -12.38532 -12.24951 -12.05427 -11.71990 -11.59450 -11.47501 -11.39133 -11.04909 -10.53588 -10.30204 -9.83463 -9.60295 -9.36976 -8.56851 -8.08156 -5.51730 0.54057 0.56518 1.41711 1.53003 1.60760 1.66248 2.12714 2.53562 2.92296 3.01078 3.11144 3.35870 3.76087 3.88500 3.92433 3.94415 4.02364 4.06416 4.19323 4.30182 4.36389 4.38997 4.45994 4.46858 4.52965 4.53842 4.59368 4.66582 4.74447 4.80755 4.82323 4.83690 4.88044 5.01692 5.12747 5.13421 5.19068 5.21622 5.22559 5.38296 5.40370 5.58743 5.65924 5.69098 5.87131 6.02092 6.13816 6.22136 6.39767 6.72198 6.99891 7.36293 7.66070 8.19903 9.07612 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011939 B = 0.004883 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.772165 B = 5732.258682 C = 7588.678736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.086 3.914 4 H 0.114 0.886 5 O -0.388 6.388 6 C 0.017 3.983 7 C 0.500 3.500 8 O -0.588 6.588 9 N -0.684 5.684 10 C 0.148 3.852 11 C 0.198 3.802 12 H 0.059 0.941 13 C -0.101 4.101 14 C -0.126 4.126 15 C -0.128 4.128 16 C -0.123 4.123 17 C -0.132 4.132 18 C -0.075 4.075 19 C -0.095 4.095 20 C 0.140 3.860 21 N -0.608 5.608 22 C -0.248 4.248 23 H 0.040 0.960 24 C 0.015 3.985 25 N -0.922 5.922 26 Si 0.896 3.104 27 H -0.281 1.281 28 H -0.310 1.310 29 H -0.238 1.238 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.411 0.589 39 H 0.032 0.968 40 H 0.078 0.922 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.051 0.949 48 H 0.043 0.957 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 10.271 6.927 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C 0.025 3.975 4 H 0.131 0.869 5 O -0.306 6.306 6 C -0.078 4.078 7 C 0.286 3.714 8 O -0.469 6.469 9 N -0.336 5.336 10 C 0.024 3.976 11 C 0.092 3.908 12 H 0.077 0.923 13 C -0.103 4.103 14 C -0.144 4.144 15 C -0.146 4.146 16 C -0.141 4.141 17 C -0.150 4.150 18 C -0.075 4.075 19 C -0.133 4.133 20 C 0.015 3.985 21 N -0.333 5.333 22 C -0.377 4.377 23 H 0.058 0.942 24 C -0.185 4.185 25 N -0.563 5.563 26 Si 0.723 3.277 27 H -0.208 1.208 28 H -0.238 1.238 29 H -0.162 1.162 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.050 0.950 40 H 0.096 0.904 41 H 0.148 0.852 42 H 0.163 0.837 43 H 0.164 0.836 44 H 0.153 0.847 45 H 0.076 0.924 46 H 0.107 0.893 47 H 0.069 0.931 48 H 0.061 0.939 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.224 10.407 6.064 12.469 hybrid contribution -0.823 -0.938 0.821 1.494 sum 2.401 9.468 6.884 11.950 Atomic orbital electron populations 1.21727 0.92961 1.02358 1.02597 1.21754 0.98310 0.93708 1.02602 1.21988 0.90230 0.95549 0.89721 0.86865 1.87991 1.52406 1.59958 1.30270 1.23223 0.88582 0.92343 1.03700 1.21082 0.91174 0.77016 0.82108 1.90603 1.67354 1.50162 1.38795 1.45895 1.08064 1.60471 1.19149 1.21189 0.80402 0.98943 0.97046 1.19678 0.89979 0.86020 0.95103 0.92336 1.20057 0.95489 0.94037 1.00708 1.21320 0.95944 0.96665 1.00499 1.21345 0.93317 0.99881 1.00070 1.21361 1.00920 0.92398 0.99441 1.21416 0.93408 0.98916 1.01275 1.19683 0.94002 0.94789 0.99040 1.20899 0.97255 0.93584 1.01602 1.21364 0.91416 0.93562 0.92119 1.44321 1.45252 1.03281 1.40464 1.18334 1.03047 1.26861 0.89501 0.94245 1.25932 0.96675 0.96670 0.99195 1.70075 1.27097 1.22295 1.36842 0.86537 0.79929 0.76276 0.84960 1.20756 1.23753 1.16186 0.91602 0.92692 0.90781 0.94198 0.90816 0.92740 0.88299 0.91960 0.75117 0.94976 0.90384 0.85183 0.83662 0.83558 0.84744 0.92414 0.89258 0.93086 0.93866 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 8.85 71.98 0.64 -3.31 16 2 C -0.13 -4.65 5.62 30.59 0.17 -4.48 16 3 C 0.09 2.98 2.68 29.85 0.08 3.06 16 4 H 0.11 3.05 7.60 -2.38 -0.02 3.03 16 5 O -0.39 -13.45 9.60 -130.02 -1.25 -14.69 16 6 C 0.02 0.39 10.47 113.37 1.19 1.57 16 7 C 0.50 20.91 7.16 87.65 0.63 21.54 16 8 O -0.59 -29.18 16.48 15.93 0.26 -28.92 16 9 N -0.68 -26.85 3.49 -463.06 -1.62 -28.47 16 10 C 0.15 5.70 4.15 86.38 0.36 6.06 16 11 C 0.20 7.22 3.07 44.25 0.14 7.36 16 12 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 13 C -0.10 -3.35 5.44 -19.82 -0.11 -3.46 16 14 C -0.13 -3.51 9.06 22.35 0.20 -3.31 16 15 C -0.13 -3.00 10.05 22.21 0.22 -2.78 16 16 C -0.12 -2.80 10.04 22.20 0.22 -2.58 16 17 C -0.13 -3.47 9.59 22.37 0.21 -3.26 16 18 C -0.07 -2.41 5.76 -19.85 -0.11 -2.53 16 19 C -0.09 -3.16 5.86 29.74 0.17 -2.99 16 20 C 0.14 5.42 4.39 86.17 0.38 5.80 16 21 N -0.61 -25.74 2.38 -680.13 -1.62 -27.36 16 22 C -0.25 -12.33 6.81 84.03 0.57 -11.75 16 23 H 0.04 2.33 6.56 -2.91 -0.02 2.31 16 24 C 0.01 0.75 4.58 84.86 0.39 1.14 16 25 N -0.92 -51.30 13.97 21.65 0.30 -50.99 16 26 Si 0.90 38.99 26.78 68.60 1.84 40.83 16 27 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.31 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.24 -9.60 5.06 99.48 0.50 -9.09 16 30 H 0.07 1.70 6.86 -2.39 -0.02 1.69 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 3.08 7.30 -2.39 -0.02 3.06 16 35 H 0.05 1.06 8.03 -2.39 -0.02 1.04 16 36 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.17 6.34 -2.39 -0.02 1.16 16 38 H 0.41 15.79 6.88 -92.71 -0.64 15.15 16 39 H 0.03 1.48 7.83 -2.39 -0.02 1.46 16 40 H 0.08 2.63 6.69 -2.39 -0.02 2.61 16 41 H 0.13 3.23 6.70 -2.91 -0.02 3.21 16 42 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.13 2.92 8.05 -2.91 -0.02 2.89 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.09 2.42 8.11 -2.39 -0.02 2.40 16 47 H 0.05 2.14 6.29 -2.38 -0.01 2.12 16 48 H 0.04 1.58 7.10 -2.39 -0.02 1.57 16 49 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -67.97 379.17 3.38 -64.59 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: 0.11 Total: 38.94 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 5.35 Total: 6.08 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -2.93 Total: -106.82 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -0.99 Total: -43.62 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.84 Total: 40.83 kcal Total: -67.97 3.38 -64.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328465371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.173 kcal (2) G-P(sol) polarization free energy of solvation -67.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds