Wall clock time and date at job start Tue Mar 31 2020 16:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52991 * 109.47199 * 2 1 4 4 H 1.08997 * 109.47383 * 55.00115 * 3 2 1 5 5 O 1.42904 * 109.47354 * 295.00232 * 3 2 1 6 6 C 1.42899 * 114.00230 * 149.99918 * 5 3 2 7 7 C 1.50706 * 109.47373 * 175.00414 * 3 2 1 8 8 O 1.21274 * 120.00413 * 115.00391 * 7 3 2 9 9 N 1.34780 * 119.99374 * 294.99886 * 7 3 2 10 10 C 1.46503 * 119.99544 * 179.97438 * 9 7 3 11 11 C 1.53002 * 109.47108 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.42963 * 65.08632 * 11 10 9 13 13 C 1.50803 * 109.43899 * 185.00077 * 11 10 9 14 14 C 1.38832 * 117.80872 * 288.74370 * 13 11 10 15 15 C 1.37957 * 120.50817 * 179.38122 * 14 13 11 16 16 C 1.38259 * 119.71518 * 359.81017 * 15 14 13 17 17 C 1.37907 * 119.82870 * 0.26884 * 16 15 14 18 18 C 1.37675 * 122.34727 * 108.61381 * 13 11 10 19 19 C 1.50592 * 122.85261 * 1.18832 * 18 13 11 20 20 C 1.52797 * 110.91480 * 340.08727 * 19 18 13 21 21 N 1.46683 * 109.39958 * 305.20139 * 11 10 9 22 22 C 1.36937 * 121.32717 * 104.36245 * 21 11 10 23 23 H 1.08004 * 120.00150 * 333.79970 * 22 21 11 24 24 C 1.38813 * 120.00130 * 153.80456 * 22 21 11 25 25 N 1.31618 * 119.99669 * 340.97635 * 24 22 21 26 26 Si 1.86797 * 120.00376 * 160.98144 * 24 22 21 27 27 H 1.48506 * 109.47001 * 94.42278 * 26 24 22 28 28 H 1.48501 * 109.47029 * 214.42126 * 26 24 22 29 29 H 1.48503 * 109.47092 * 334.42112 * 26 24 22 30 30 H 1.08999 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47245 * 300.00012 * 1 2 3 32 32 H 1.09004 * 109.47325 * 59.99947 * 1 2 3 33 33 H 1.09007 * 109.47245 * 239.99988 * 2 1 3 34 34 H 1.08998 * 109.47102 * 120.00456 * 2 1 3 35 35 H 1.09001 * 109.47076 * 300.00486 * 6 5 3 36 36 H 1.09000 * 109.46971 * 60.00078 * 6 5 3 37 37 H 1.08994 * 109.47268 * 179.97438 * 6 5 3 38 38 H 0.96995 * 120.00493 * 359.97438 * 9 7 3 39 39 H 1.09003 * 109.47062 * 60.00354 * 10 9 7 40 40 H 1.08994 * 109.47111 * 299.99991 * 10 9 7 41 41 H 1.08005 * 119.74507 * 359.35654 * 14 13 11 42 42 H 1.08001 * 120.14228 * 179.83901 * 15 14 13 43 43 H 1.08003 * 120.08478 * 180.23848 * 16 15 14 44 44 H 1.08007 * 119.70978 * 180.02562 * 17 16 15 45 45 H 1.08996 * 109.32406 * 219.61219 * 19 18 13 46 46 H 1.09006 * 108.97781 * 100.32946 * 19 18 13 47 47 H 1.09002 * 109.77031 * 287.74375 * 20 19 18 48 48 H 1.08998 * 109.82063 * 166.97162 * 20 19 18 49 49 H 0.96998 * 120.00337 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 1.4558 3.4903 -1.1003 7 6 3.5419 1.4442 0.1237 8 8 4.2249 1.8611 -0.7875 9 7 4.1259 0.9827 1.2473 10 6 5.5860 0.9839 1.3674 11 6 5.9863 0.4127 2.7292 12 1 5.6944 -0.6362 2.7823 13 6 7.4799 0.5274 2.9022 14 6 8.2862 -0.3066 2.1395 15 6 9.6602 -0.2397 2.2440 16 6 10.2381 0.6679 3.1124 17 6 9.4381 1.4957 3.8717 18 6 8.0535 1.4219 3.7776 19 6 7.2439 2.3411 4.6537 20 6 5.8252 2.5032 4.1100 21 7 5.3067 1.1627 3.7909 22 6 4.2333 0.6369 4.4590 23 1 3.6097 -0.1040 3.9808 24 6 3.9465 1.0561 5.7509 25 7 4.8741 1.6508 6.4709 26 14 2.2444 0.7761 6.4676 27 1 2.2360 -0.4904 7.2431 28 1 1.8922 1.9072 7.3630 29 1 1.2519 0.6889 5.3664 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.6618 3.6808 -0.3782 36 1 2.3768 3.9643 -0.7609 37 1 1.1723 3.9004 -2.0695 38 1 3.5797 0.6497 1.9763 39 1 5.9571 2.0050 1.2781 40 1 6.0162 0.3705 0.5758 41 1 7.8344 -1.0135 1.4594 42 1 10.2818 -0.8931 1.6498 43 1 11.3132 0.7280 3.1961 44 1 9.8916 2.2042 4.5491 45 1 7.7261 3.3178 4.6944 46 1 7.1969 1.9223 5.6590 47 1 5.8435 3.1157 3.2086 48 1 5.1925 2.9737 4.8627 49 1 4.6739 1.9434 7.3737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328465373.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:17 Heat of formation + Delta-G solvation = -42.272685 kcal Electronic energy + Delta-G solvation = -29873.037490 eV Core-core repulsion = 25993.321159 eV Total energy + Delta-G solvation = -3879.716331 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.88421 -39.28213 -37.33787 -36.21864 -34.23430 -33.49623 -32.35823 -31.89749 -29.91979 -28.83851 -27.98916 -26.87174 -25.74595 -24.02541 -22.65284 -22.18422 -21.85799 -21.22283 -19.96193 -18.70613 -17.42543 -16.87896 -16.63698 -15.92081 -15.53512 -15.34483 -15.01343 -14.57604 -14.49493 -14.30822 -14.18662 -13.91957 -13.73526 -13.46397 -13.27839 -12.75899 -12.58771 -12.43178 -12.40154 -12.20194 -11.94290 -11.73629 -11.52048 -11.28200 -11.19521 -11.14475 -11.06484 -10.87464 -10.75680 -10.72917 -10.49741 -10.38218 -10.14628 -9.90302 -9.58758 -8.99876 -8.65512 -8.51098 -8.26369 -7.93126 -6.89206 -5.98145 -3.41262 1.85926 1.93235 2.97112 3.24959 3.32293 3.34190 3.44562 3.93258 4.28178 4.30945 4.86087 4.93465 5.08570 5.18382 5.21653 5.26307 5.33821 5.35365 5.40340 5.44418 5.47842 5.54082 5.56349 5.72631 5.75181 5.80564 5.88137 5.93206 5.96526 6.03259 6.07494 6.22566 6.23824 6.35253 6.42593 6.52581 6.57300 6.69197 6.73945 6.92064 6.95458 7.00663 7.08829 7.31159 7.33673 7.49538 7.58476 7.63648 8.04496 8.22119 8.66058 8.98910 9.61465 10.20668 11.09093 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.004871 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.316378 B = 5746.850443 C = 7904.612217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C 0.074 3.926 4 H 0.087 0.913 5 O -0.359 6.359 6 C 0.031 3.969 7 C 0.485 3.515 8 O -0.544 6.544 9 N -0.703 5.703 10 C 0.115 3.885 11 C 0.193 3.807 12 H 0.077 0.923 13 C -0.080 4.080 14 C -0.118 4.118 15 C -0.139 4.139 16 C -0.128 4.128 17 C -0.135 4.135 18 C -0.039 4.039 19 C -0.097 4.097 20 C 0.165 3.835 21 N -0.579 5.579 22 C -0.261 4.261 23 H 0.068 0.932 24 C 0.011 3.989 25 N -0.890 5.890 26 Si 0.901 3.099 27 H -0.287 1.287 28 H -0.289 1.289 29 H -0.278 1.278 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.410 0.590 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.114 0.886 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.048 0.952 46 H 0.101 0.899 47 H 0.006 0.994 48 H 0.095 0.905 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.370 -0.722 -7.927 8.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.105 0.895 5 O -0.276 6.276 6 C -0.066 4.066 7 C 0.270 3.730 8 O -0.422 6.422 9 N -0.357 5.357 10 C -0.012 4.012 11 C 0.085 3.915 12 H 0.095 0.905 13 C -0.082 4.082 14 C -0.137 4.137 15 C -0.157 4.157 16 C -0.146 4.146 17 C -0.153 4.153 18 C -0.040 4.040 19 C -0.135 4.135 20 C 0.039 3.961 21 N -0.300 5.300 22 C -0.389 4.389 23 H 0.086 0.914 24 C -0.189 4.189 25 N -0.532 5.532 26 Si 0.730 3.270 27 H -0.214 1.214 28 H -0.215 1.215 29 H -0.203 1.203 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.247 0.753 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.067 0.933 46 H 0.119 0.881 47 H 0.024 0.976 48 H 0.113 0.887 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.964 -0.451 -8.545 8.611 hybrid contribution -0.681 -0.104 1.210 1.392 sum -1.645 -0.555 -7.335 7.538 Atomic orbital electron populations 1.21721 0.94645 1.01920 1.02302 1.21574 0.97133 0.93074 1.03581 1.22117 0.91424 0.96273 0.88969 0.89547 1.87932 1.88197 1.20711 1.30796 1.22818 0.99862 0.81645 1.02284 1.21263 0.90964 0.78192 0.82631 1.90658 1.65125 1.46922 1.39456 1.45982 1.08339 1.63400 1.17966 1.21873 0.79764 1.01386 0.98136 1.19615 0.87266 0.96247 0.88419 0.90522 1.20083 0.96280 0.95784 0.96053 1.21097 0.93623 0.99489 0.99491 1.20880 0.94828 0.99840 1.00177 1.20914 0.98974 0.97011 0.97698 1.21195 0.93587 1.00223 1.00263 1.19858 0.93179 0.95878 0.95042 1.20991 0.96640 0.95629 1.00234 1.20800 0.92620 0.86094 0.96547 1.44135 1.33627 1.12916 1.39322 1.19019 1.01722 1.23225 0.94974 0.91410 1.24987 0.97776 1.00770 0.95379 1.69974 1.31047 1.43131 1.09084 0.86329 0.84259 0.77464 0.78947 1.21439 1.21542 1.20306 0.92355 0.92591 0.91989 0.90615 0.89824 0.94063 0.93663 0.89580 0.75275 0.92274 0.92494 0.86769 0.86950 0.87055 0.86908 0.93330 0.88131 0.97594 0.88662 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.81 37.15 0.36 -1.17 16 2 C -0.12 -1.40 5.61 -26.74 -0.15 -1.55 16 3 C 0.07 1.06 2.51 -27.89 -0.07 0.99 16 4 H 0.09 1.14 7.79 -51.93 -0.40 0.74 16 5 O -0.36 -5.37 9.42 -55.09 -0.52 -5.89 16 6 C 0.03 0.37 10.81 101.05 1.09 1.47 16 7 C 0.48 8.50 7.13 -10.98 -0.08 8.42 16 8 O -0.54 -11.44 16.51 -14.30 -0.24 -11.68 16 9 N -0.70 -12.12 5.29 -60.29 -0.32 -12.44 16 10 C 0.11 2.08 5.01 -4.04 -0.02 2.06 16 11 C 0.19 3.71 2.50 -68.93 -0.17 3.54 16 12 H 0.08 1.47 7.98 -51.93 -0.41 1.06 16 13 C -0.08 -1.51 5.16 -104.56 -0.54 -2.05 16 14 C -0.12 -1.95 9.35 -39.46 -0.37 -2.32 16 15 C -0.14 -2.10 10.05 -39.68 -0.40 -2.49 16 16 C -0.13 -1.94 10.04 -39.69 -0.40 -2.34 16 17 C -0.13 -2.28 9.59 -39.43 -0.38 -2.66 16 18 C -0.04 -0.76 5.76 -104.61 -0.60 -1.36 16 19 C -0.10 -1.98 5.77 -28.04 -0.16 -2.14 16 20 C 0.16 3.61 5.46 -3.75 -0.02 3.59 16 21 N -0.58 -12.63 2.30 -166.32 -0.38 -13.01 16 22 C -0.26 -6.11 8.71 -15.06 -0.13 -6.24 16 23 H 0.07 1.51 7.32 -52.48 -0.38 1.13 16 24 C 0.01 0.27 4.93 -17.43 -0.09 0.18 16 25 N -0.89 -22.85 10.16 55.49 0.56 -22.29 16 26 Si 0.90 19.49 29.59 -169.99 -5.03 14.46 16 27 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.96 7.77 -51.93 -0.40 0.56 16 35 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.41 6.94 6.39 -40.82 -0.26 6.68 16 39 H 0.06 1.19 7.55 -51.93 -0.39 0.79 16 40 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 41 H 0.11 1.65 8.05 -52.48 -0.42 1.23 16 42 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 44 H 0.11 1.71 8.05 -52.48 -0.42 1.29 16 45 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 46 H 0.10 2.34 7.16 -51.93 -0.37 1.97 16 47 H 0.01 0.13 7.48 -51.93 -0.39 -0.26 16 48 H 0.10 2.31 5.91 -51.93 -0.31 2.00 16 49 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -28.41 391.46 -10.08 -38.49 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.93 Total: 10.54 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.12 Total: -4.08 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.14 Total: -47.73 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.76 Total: -17.57 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.41 -10.08 -38.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328465373.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.785 kcal (2) G-P(sol) polarization free energy of solvation -28.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds