Wall clock time and date at job start Tue Mar 31 2020 16:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52991 * 109.47199 * 2 1 4 4 H 1.08997 * 109.47383 * 55.00115 * 3 2 1 5 5 O 1.42904 * 109.47354 * 295.00232 * 3 2 1 6 6 C 1.42899 * 114.00230 * 149.99918 * 5 3 2 7 7 C 1.50706 * 109.47373 * 175.00414 * 3 2 1 8 8 O 1.21274 * 120.00413 * 115.00391 * 7 3 2 9 9 N 1.34780 * 119.99374 * 294.99886 * 7 3 2 10 10 C 1.46503 * 119.99544 * 179.97438 * 9 7 3 11 11 C 1.53002 * 109.47108 * 180.02562 * 10 9 7 12 12 H 1.09004 * 109.42963 * 65.08632 * 11 10 9 13 13 C 1.50803 * 109.43899 * 185.00077 * 11 10 9 14 14 C 1.38832 * 117.80872 * 288.74370 * 13 11 10 15 15 C 1.37957 * 120.50817 * 179.38122 * 14 13 11 16 16 C 1.38259 * 119.71518 * 359.81017 * 15 14 13 17 17 C 1.37907 * 119.82870 * 0.26884 * 16 15 14 18 18 C 1.37675 * 122.34727 * 108.61381 * 13 11 10 19 19 C 1.50592 * 122.85261 * 1.18832 * 18 13 11 20 20 C 1.52797 * 110.91480 * 340.08727 * 19 18 13 21 21 N 1.46683 * 109.39958 * 305.20139 * 11 10 9 22 22 C 1.36937 * 121.32717 * 104.36245 * 21 11 10 23 23 H 1.08004 * 120.00150 * 333.79970 * 22 21 11 24 24 C 1.38813 * 120.00130 * 153.80456 * 22 21 11 25 25 N 1.31618 * 119.99669 * 340.97635 * 24 22 21 26 26 Si 1.86797 * 120.00376 * 160.98144 * 24 22 21 27 27 H 1.48506 * 109.47001 * 94.42278 * 26 24 22 28 28 H 1.48501 * 109.47029 * 214.42126 * 26 24 22 29 29 H 1.48503 * 109.47092 * 334.42112 * 26 24 22 30 30 H 1.08999 * 109.47303 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47245 * 300.00012 * 1 2 3 32 32 H 1.09004 * 109.47325 * 59.99947 * 1 2 3 33 33 H 1.09007 * 109.47245 * 239.99988 * 2 1 3 34 34 H 1.08998 * 109.47102 * 120.00456 * 2 1 3 35 35 H 1.09001 * 109.47076 * 300.00486 * 6 5 3 36 36 H 1.09000 * 109.46971 * 60.00078 * 6 5 3 37 37 H 1.08994 * 109.47268 * 179.97438 * 6 5 3 38 38 H 0.96995 * 120.00493 * 359.97438 * 9 7 3 39 39 H 1.09003 * 109.47062 * 60.00354 * 10 9 7 40 40 H 1.08994 * 109.47111 * 299.99991 * 10 9 7 41 41 H 1.08005 * 119.74507 * 359.35654 * 14 13 11 42 42 H 1.08001 * 120.14228 * 179.83901 * 15 14 13 43 43 H 1.08003 * 120.08478 * 180.23848 * 16 15 14 44 44 H 1.08007 * 119.70978 * 180.02562 * 17 16 15 45 45 H 1.08996 * 109.32406 * 219.61219 * 19 18 13 46 46 H 1.09006 * 108.97781 * 100.32946 * 19 18 13 47 47 H 1.09002 * 109.77031 * 287.74375 * 20 19 18 48 48 H 1.08998 * 109.82063 * 166.97162 * 20 19 18 49 49 H 0.96998 * 120.00337 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 1.4558 3.4903 -1.1003 7 6 3.5419 1.4442 0.1237 8 8 4.2249 1.8611 -0.7875 9 7 4.1259 0.9827 1.2473 10 6 5.5860 0.9839 1.3674 11 6 5.9863 0.4127 2.7292 12 1 5.6944 -0.6362 2.7823 13 6 7.4799 0.5274 2.9022 14 6 8.2862 -0.3066 2.1395 15 6 9.6602 -0.2397 2.2440 16 6 10.2381 0.6679 3.1124 17 6 9.4381 1.4957 3.8717 18 6 8.0535 1.4219 3.7776 19 6 7.2439 2.3411 4.6537 20 6 5.8252 2.5032 4.1100 21 7 5.3067 1.1627 3.7909 22 6 4.2333 0.6369 4.4590 23 1 3.6097 -0.1040 3.9808 24 6 3.9465 1.0561 5.7509 25 7 4.8741 1.6508 6.4709 26 14 2.2444 0.7761 6.4676 27 1 2.2360 -0.4904 7.2431 28 1 1.8922 1.9072 7.3630 29 1 1.2519 0.6889 5.3664 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.6618 3.6808 -0.3782 36 1 2.3768 3.9643 -0.7609 37 1 1.1723 3.9004 -2.0695 38 1 3.5797 0.6497 1.9763 39 1 5.9571 2.0050 1.2781 40 1 6.0162 0.3705 0.5758 41 1 7.8344 -1.0135 1.4594 42 1 10.2818 -0.8931 1.6498 43 1 11.3132 0.7280 3.1961 44 1 9.8916 2.2042 4.5491 45 1 7.7261 3.3178 4.6944 46 1 7.1969 1.9223 5.6590 47 1 5.8435 3.1157 3.2086 48 1 5.1925 2.9737 4.8627 49 1 4.6739 1.9434 7.3737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328465373.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:16 Heat of formation + Delta-G solvation = -56.619308 kcal Electronic energy + Delta-G solvation = -29873.659607 eV Core-core repulsion = 25993.321159 eV Total energy + Delta-G solvation = -3880.338447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.27069 -40.63570 -38.57126 -37.73178 -35.73721 -34.59825 -33.99716 -33.29491 -31.51310 -30.21075 -29.25364 -28.17936 -26.95859 -25.59814 -24.16365 -23.59992 -22.98380 -22.61011 -21.32124 -20.23731 -18.88907 -18.19379 -18.02809 -17.31485 -17.05301 -16.66604 -16.33910 -16.03793 -15.88053 -15.67208 -15.54125 -15.22069 -15.04669 -14.88560 -14.42200 -14.19246 -13.95863 -13.88046 -13.75830 -13.39127 -13.31280 -12.97320 -12.90757 -12.73664 -12.69167 -12.53800 -12.48341 -12.22463 -12.09286 -12.04990 -11.78332 -11.72981 -11.62455 -11.50383 -11.21861 -10.47660 -10.30475 -9.99598 -9.56994 -9.31520 -8.68108 -7.82822 -5.27212 0.56328 0.61366 1.51876 1.55852 1.58834 1.62430 2.16262 2.53511 2.81388 2.97095 3.34022 3.55698 3.70784 3.90408 3.95154 3.99501 4.06884 4.15578 4.30201 4.35190 4.36263 4.40187 4.44322 4.50195 4.56186 4.58603 4.66310 4.76937 4.78743 4.79471 4.86810 4.96942 4.97698 5.09746 5.10163 5.16088 5.23132 5.25132 5.41831 5.49179 5.54804 5.63001 5.68560 5.69848 5.84459 5.98579 6.00217 6.25468 6.39830 6.64446 7.13911 7.26778 7.82361 8.40649 9.22953 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008934 B = 0.004871 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3133.316378 B = 5746.850443 C = 7904.612217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.100 0.900 5 O -0.374 6.374 6 C 0.025 3.975 7 C 0.482 3.518 8 O -0.583 6.583 9 N -0.699 5.699 10 C 0.128 3.872 11 C 0.198 3.802 12 H 0.077 0.923 13 C -0.104 4.104 14 C -0.124 4.124 15 C -0.132 4.132 16 C -0.123 4.123 17 C -0.142 4.142 18 C -0.071 4.071 19 C -0.085 4.085 20 C 0.171 3.829 21 N -0.587 5.587 22 C -0.258 4.258 23 H 0.081 0.919 24 C -0.039 4.039 25 N -0.918 5.918 26 Si 0.957 3.043 27 H -0.294 1.294 28 H -0.302 1.302 29 H -0.259 1.259 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.025 0.975 37 H 0.105 0.895 38 H 0.413 0.587 39 H 0.036 0.964 40 H 0.066 0.934 41 H 0.133 0.867 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.125 0.875 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.004 0.996 48 H 0.068 0.932 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.323 -2.071 -9.179 9.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.016 3.984 4 H 0.118 0.882 5 O -0.292 6.292 6 C -0.071 4.071 7 C 0.269 3.731 8 O -0.463 6.463 9 N -0.352 5.352 10 C 0.002 3.998 11 C 0.090 3.910 12 H 0.095 0.905 13 C -0.105 4.105 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.141 4.141 17 C -0.160 4.160 18 C -0.071 4.071 19 C -0.123 4.123 20 C 0.045 3.955 21 N -0.308 5.308 22 C -0.388 4.388 23 H 0.099 0.901 24 C -0.236 4.236 25 N -0.562 5.562 26 Si 0.786 3.214 27 H -0.222 1.222 28 H -0.229 1.229 29 H -0.183 1.183 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.124 0.876 38 H 0.250 0.750 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.151 0.849 42 H 0.166 0.834 43 H 0.164 0.836 44 H 0.143 0.857 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.022 0.978 48 H 0.086 0.914 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.931 -1.817 -9.816 10.026 hybrid contribution -0.595 0.319 1.529 1.671 sum -1.526 -1.498 -8.287 8.559 Atomic orbital electron populations 1.21692 0.92968 1.02977 1.02446 1.21606 0.98510 0.91353 1.03623 1.22218 0.88859 0.97947 0.89388 0.88234 1.87917 1.87978 1.21992 1.31285 1.22992 0.99615 0.80357 1.04113 1.21943 0.92421 0.76943 0.81793 1.90632 1.66361 1.48633 1.40713 1.45974 1.07993 1.63170 1.18072 1.21651 0.80406 0.99993 0.97799 1.19625 0.87915 0.95740 0.87683 0.90511 1.20136 0.96071 0.97007 0.97325 1.21338 0.94424 0.99172 0.99295 1.21327 0.94509 0.99549 0.99613 1.21328 1.00609 0.95764 0.96396 1.21394 0.92744 1.01005 1.00889 1.19866 0.94350 0.96777 0.96102 1.20742 0.96275 0.96549 0.98781 1.20609 0.93137 0.86273 0.95472 1.44204 1.33895 1.13091 1.39658 1.19388 1.02131 1.22454 0.94787 0.90138 1.25647 1.00383 1.01517 0.96049 1.70137 1.32387 1.44804 1.08920 0.85433 0.81482 0.76193 0.78307 1.22169 1.22934 1.18337 0.90867 0.92062 0.92209 0.91186 0.89180 0.91869 0.95650 0.87637 0.74964 0.94586 0.91565 0.84909 0.83418 0.83636 0.85700 0.92241 0.91436 0.97825 0.91391 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.81 71.98 0.71 -1.91 16 2 C -0.11 -2.54 5.61 30.59 0.17 -2.37 16 3 C 0.08 2.13 2.51 29.85 0.08 2.21 16 4 H 0.10 2.47 7.79 -2.39 -0.02 2.45 16 5 O -0.37 -10.80 9.42 -129.99 -1.22 -12.03 16 6 C 0.03 0.59 10.81 113.37 1.23 1.82 16 7 C 0.48 16.81 7.13 87.66 0.63 17.43 16 8 O -0.58 -24.74 16.51 15.98 0.26 -24.48 16 9 N -0.70 -23.91 5.29 -463.05 -2.45 -26.36 16 10 C 0.13 4.66 5.01 86.38 0.43 5.09 16 11 C 0.20 7.61 2.50 44.24 0.11 7.72 16 12 H 0.08 2.91 7.98 -2.38 -0.02 2.89 16 13 C -0.10 -3.86 5.16 -19.82 -0.10 -3.96 16 14 C -0.12 -3.81 9.35 22.35 0.21 -3.61 16 15 C -0.13 -3.51 10.05 22.21 0.22 -3.29 16 16 C -0.12 -3.34 10.04 22.20 0.22 -3.12 16 17 C -0.14 -4.64 9.59 22.37 0.21 -4.42 16 18 C -0.07 -2.74 5.76 -19.85 -0.11 -2.86 16 19 C -0.08 -3.62 5.77 29.75 0.17 -3.44 16 20 C 0.17 7.79 5.46 86.17 0.47 8.26 16 21 N -0.59 -26.07 2.30 -680.12 -1.56 -27.63 16 22 C -0.26 -12.16 8.71 84.03 0.73 -11.43 16 23 H 0.08 3.51 7.32 -2.91 -0.02 3.49 16 24 C -0.04 -1.94 4.93 84.86 0.42 -1.52 16 25 N -0.92 -48.90 10.16 21.65 0.22 -48.68 16 26 Si 0.96 40.34 29.59 68.60 2.03 42.37 16 27 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 28 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 29 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.06 1.12 7.82 -2.38 -0.02 1.10 16 33 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.09 1.89 7.77 -2.39 -0.02 1.88 16 35 H 0.06 1.19 8.08 -2.39 -0.02 1.17 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.41 13.69 6.39 -92.71 -0.59 13.10 16 39 H 0.04 1.48 7.55 -2.39 -0.02 1.46 16 40 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 41 H 0.13 3.50 8.05 -2.91 -0.02 3.48 16 42 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 43 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 44 H 0.13 3.64 8.05 -2.91 -0.02 3.62 16 45 H 0.06 2.29 8.11 -2.39 -0.02 2.27 16 46 H 0.07 3.31 7.16 -2.38 -0.02 3.29 16 47 H 0.00 0.17 7.48 -2.39 -0.02 0.15 16 48 H 0.07 3.47 5.91 -2.39 -0.01 3.46 16 49 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 Total: -1.00 -62.88 391.46 3.42 -59.47 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.35 Total: 36.74 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.79 Total: 0.59 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -3.79 Total: -102.67 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.96 Total: -36.50 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -62.88 3.42 -59.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328465373.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.847 kcal (2) G-P(sol) polarization free energy of solvation -62.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds