Wall clock time and date at job start Tue Mar 31 2020 16:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 H 1.09009 * 109.46986 * 302.88600 * 3 2 1 5 5 O 1.42892 * 109.47576 * 62.88907 * 3 2 1 6 6 C 1.42896 * 114.00268 * 251.55051 * 5 3 2 7 7 C 1.50707 * 109.47086 * 182.89319 * 3 2 1 8 8 O 1.21281 * 119.99602 * 244.99922 * 7 3 2 9 9 N 1.34780 * 119.99915 * 64.99184 * 7 3 2 10 10 C 1.46499 * 119.99806 * 179.97438 * 9 7 3 11 11 C 1.52993 * 109.47171 * 185.47300 * 10 9 7 12 12 H 1.09002 * 109.44100 * 301.00510 * 11 10 9 13 13 C 1.50814 * 109.43772 * 181.08777 * 11 10 9 14 14 C 1.38839 * 117.80719 * 48.51239 * 13 11 10 15 15 C 1.37952 * 120.50644 * 179.34860 * 14 13 11 16 16 C 1.38267 * 119.71547 * 359.97438 * 15 14 13 17 17 C 1.37901 * 119.82992 * 0.22141 * 16 15 14 18 18 C 1.37668 * 122.34755 * 228.28430 * 13 11 10 19 19 C 1.50602 * 122.85446 * 1.61593 * 18 13 11 20 20 C 1.52782 * 110.86539 * 339.77109 * 19 18 13 21 21 N 1.46679 * 109.40469 * 60.90577 * 11 10 9 22 22 C 1.36935 * 121.33846 * 344.47335 * 21 11 10 23 23 H 1.08001 * 119.99813 * 42.62689 * 22 21 11 24 24 C 1.38806 * 120.00204 * 222.63344 * 22 21 11 25 25 N 1.31628 * 119.99761 * 207.63341 * 24 22 21 26 26 Si 1.86803 * 120.00445 * 27.63120 * 24 22 21 27 27 H 1.48493 * 109.46987 * 84.65609 * 26 24 22 28 28 H 1.48497 * 109.47254 * 204.66054 * 26 24 22 29 29 H 1.48503 * 109.46502 * 324.65922 * 26 24 22 30 30 H 1.09002 * 109.46894 * 175.34489 * 1 2 3 31 31 H 1.08997 * 109.47470 * 295.34634 * 1 2 3 32 32 H 1.09003 * 109.46950 * 55.34661 * 1 2 3 33 33 H 1.09004 * 109.47267 * 239.99642 * 2 1 3 34 34 H 1.09000 * 109.47189 * 119.99485 * 2 1 3 35 35 H 1.09000 * 109.47334 * 300.55814 * 6 5 3 36 36 H 1.09000 * 109.47022 * 60.55182 * 6 5 3 37 37 H 1.09000 * 109.47349 * 180.55223 * 6 5 3 38 38 H 0.96997 * 119.99844 * 0.02562 * 9 7 3 39 39 H 1.09006 * 109.46509 * 65.47301 * 10 9 7 40 40 H 1.09004 * 109.47123 * 305.47816 * 10 9 7 41 41 H 1.08005 * 119.74518 * 359.35018 * 14 13 11 42 42 H 1.07995 * 120.14633 * 180.02562 * 15 14 13 43 43 H 1.08006 * 120.08614 * 180.49126 * 16 15 14 44 44 H 1.08004 * 119.71111 * 180.02562 * 17 16 15 45 45 H 1.09000 * 109.19567 * 100.12561 * 19 18 13 46 46 H 1.09000 * 109.19899 * 219.41033 * 19 18 13 47 47 H 1.08998 * 109.76820 * 287.85210 * 20 19 18 48 48 H 1.09002 * 109.81387 * 167.08646 * 20 19 18 49 49 H 0.97002 * 119.99351 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6349 1.9711 -0.8631 5 8 1.6199 2.0963 1.1991 6 6 0.5989 3.0759 1.0000 7 6 3.5453 1.4431 -0.0717 8 8 4.1965 1.8712 0.8576 9 7 4.1679 0.9678 -1.1685 10 6 5.6313 0.9690 -1.2385 11 6 6.0758 0.5097 -2.6285 12 1 5.6887 -0.4909 -2.8210 13 6 7.5824 0.4855 -2.6911 14 6 8.2636 -0.1441 -1.6580 15 6 9.6415 -0.2106 -1.6659 16 6 10.3489 0.3539 -2.7112 17 6 9.6736 0.9831 -3.7358 18 6 8.2858 1.0562 -3.7278 19 6 7.6183 1.7818 -4.8662 20 6 6.1498 1.3766 -4.9833 21 7 5.5545 1.4373 -3.6381 22 6 4.5538 2.3238 -3.3416 23 1 4.5714 2.8653 -2.4072 24 6 3.5169 2.5266 -4.2417 25 7 2.8843 3.6806 -4.2680 26 14 3.0190 1.1617 -5.4160 27 1 2.0690 0.2454 -4.7356 28 1 2.3668 1.7516 -6.6126 29 1 4.2256 0.4032 -5.8332 30 1 -0.3633 -1.0243 -0.0834 31 1 -0.3634 0.4399 0.9287 32 1 -0.3633 0.5844 -0.8454 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 0.9601 3.8434 0.3155 36 1 -0.2850 2.5986 0.5768 37 1 0.3425 3.5330 1.9558 38 1 3.6471 0.6257 -1.9119 39 1 6.0314 0.2894 -0.4860 40 1 6.0031 1.9766 -1.0525 41 1 7.7104 -0.5853 -0.8420 42 1 10.1654 -0.7022 -0.8596 43 1 11.4274 0.2983 -2.7275 44 1 10.2281 1.4230 -4.5516 45 1 7.6809 2.8561 -4.6924 46 1 8.1323 1.5394 -5.7963 47 1 6.0775 0.3613 -5.3730 48 1 5.6285 2.0649 -5.6486 49 1 2.1599 3.8224 -4.8973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328465376.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:20 Heat of formation + Delta-G solvation = -30.798632 kcal Electronic energy + Delta-G solvation = -30158.393799 eV Core-core repulsion = 26279.175020 eV Total energy + Delta-G solvation = -3879.218779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.89760 -39.25714 -37.36444 -36.35953 -34.22618 -33.25003 -32.54167 -31.94911 -30.48537 -29.11420 -28.08573 -26.65029 -25.53467 -24.33674 -22.93883 -22.07759 -21.86130 -20.93867 -19.83484 -19.25901 -17.24095 -16.72206 -16.36807 -16.08579 -15.74642 -15.36563 -15.08985 -14.72444 -14.62486 -14.24474 -14.20052 -13.83521 -13.66455 -13.39786 -13.17889 -12.95863 -12.84118 -12.42365 -12.37142 -12.35207 -12.00823 -11.98461 -11.77767 -11.46864 -11.36163 -11.21558 -11.14891 -10.99403 -10.80376 -10.63850 -10.53574 -10.14738 -9.94052 -9.77396 -9.70918 -8.84507 -8.67194 -8.46519 -8.22120 -8.17004 -6.88015 -6.17869 -3.60594 1.67607 1.71041 3.21191 3.27122 3.35946 3.38915 3.49241 4.06895 4.33787 4.39380 4.72339 5.02049 5.06476 5.07343 5.14392 5.22458 5.24601 5.27664 5.37616 5.44183 5.51664 5.56395 5.61902 5.68134 5.73515 5.84637 5.85815 5.88096 5.91381 5.98274 6.01112 6.03730 6.12006 6.13403 6.22399 6.30693 6.34996 6.41718 6.60447 6.65140 6.76429 6.81225 6.82958 7.07657 7.15868 7.32486 7.34201 7.86623 8.26043 8.29566 8.79286 8.92999 9.52350 10.01422 10.95529 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.004729 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.000306 B = 5919.730373 C = 7493.785328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.073 3.927 4 H 0.094 0.906 5 O -0.359 6.359 6 C 0.027 3.973 7 C 0.508 3.492 8 O -0.545 6.545 9 N -0.692 5.692 10 C 0.142 3.858 11 C 0.193 3.807 12 H 0.047 0.953 13 C -0.077 4.077 14 C -0.118 4.118 15 C -0.131 4.131 16 C -0.128 4.128 17 C -0.129 4.129 18 C -0.050 4.050 19 C -0.103 4.103 20 C 0.144 3.856 21 N -0.597 5.597 22 C -0.270 4.270 23 H 0.083 0.917 24 C 0.048 3.952 25 N -0.883 5.883 26 Si 0.844 3.156 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.257 1.257 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.408 0.592 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.071 0.929 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 -8.075 2.690 8.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.011 3.989 4 H 0.112 0.888 5 O -0.277 6.277 6 C -0.069 4.069 7 C 0.293 3.707 8 O -0.422 6.422 9 N -0.344 5.344 10 C 0.018 3.982 11 C 0.087 3.913 12 H 0.065 0.935 13 C -0.079 4.079 14 C -0.136 4.136 15 C -0.150 4.150 16 C -0.146 4.146 17 C -0.148 4.148 18 C -0.050 4.050 19 C -0.142 4.142 20 C 0.018 3.982 21 N -0.322 5.322 22 C -0.398 4.398 23 H 0.100 0.900 24 C -0.155 4.155 25 N -0.522 5.522 26 Si 0.671 3.329 27 H -0.212 1.212 28 H -0.223 1.223 29 H -0.181 1.181 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.245 0.755 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.133 0.867 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.937 -7.659 3.471 8.908 hybrid contribution -0.667 -0.618 -1.462 1.722 sum 2.270 -8.278 2.009 8.815 Atomic orbital electron populations 1.21774 0.95149 1.01805 1.02078 1.21859 0.96871 0.95091 1.03157 1.22031 0.92457 0.94733 0.89636 0.88807 1.87948 1.56262 1.54296 1.29174 1.22920 0.90298 0.91435 1.02292 1.20435 0.89620 0.78071 0.82573 1.90643 1.67160 1.46679 1.37768 1.45853 1.07328 1.62863 1.18365 1.21245 0.80200 1.01831 0.94966 1.19645 0.88059 0.93718 0.89895 0.93535 1.20090 0.96431 0.97307 0.94108 1.21156 0.94360 0.99860 0.98271 1.20952 0.94225 1.01117 0.98659 1.20946 0.99225 0.99437 0.94970 1.21175 0.93949 1.00639 0.98990 1.19596 0.92802 0.96607 0.96026 1.21044 0.98321 1.00134 0.94653 1.21366 0.90350 0.98494 0.87951 1.44284 1.40779 1.40484 1.06615 1.18712 0.98893 1.15322 1.06866 0.89959 1.25594 0.96436 0.96058 0.97429 1.69977 1.24080 1.21160 1.36984 0.87428 0.79728 0.84643 0.81092 1.21237 1.22257 1.18119 0.92470 0.92196 0.92585 0.90463 0.90782 0.93484 0.94013 0.89749 0.75525 0.92410 0.91052 0.86209 0.86627 0.86800 0.86727 0.90426 0.92026 0.94931 0.91083 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.96 37.16 0.33 -1.44 16 2 C -0.13 -1.82 5.62 -26.73 -0.15 -1.97 16 3 C 0.07 1.25 2.68 -27.88 -0.07 1.17 16 4 H 0.09 1.64 7.64 -51.92 -0.40 1.24 16 5 O -0.36 -6.30 9.48 -55.09 -0.52 -6.82 16 6 C 0.03 0.38 10.41 101.05 1.05 1.43 16 7 C 0.51 10.20 7.18 -10.98 -0.08 10.12 16 8 O -0.54 -12.83 16.50 -14.30 -0.24 -13.07 16 9 N -0.69 -13.11 3.57 -60.29 -0.22 -13.33 16 10 C 0.14 2.66 4.15 -4.05 -0.02 2.64 16 11 C 0.19 3.55 3.04 -68.93 -0.21 3.34 16 12 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 13 C -0.08 -1.33 5.44 -104.55 -0.57 -1.89 16 14 C -0.12 -1.77 9.05 -39.46 -0.36 -2.13 16 15 C -0.13 -1.77 10.05 -39.68 -0.40 -2.17 16 16 C -0.13 -1.70 10.04 -39.69 -0.40 -2.09 16 17 C -0.13 -1.88 9.59 -39.43 -0.38 -2.26 16 18 C -0.05 -0.84 5.76 -104.60 -0.60 -1.44 16 19 C -0.10 -1.75 5.86 -28.04 -0.16 -1.92 16 20 C 0.14 2.82 4.34 -3.75 -0.02 2.80 16 21 N -0.60 -12.57 2.40 -166.33 -0.40 -12.97 16 22 C -0.27 -6.55 7.00 -15.06 -0.11 -6.65 16 23 H 0.08 2.27 6.51 -52.49 -0.34 1.93 16 24 C 0.05 1.20 5.02 -17.43 -0.09 1.11 16 25 N -0.88 -24.23 13.97 55.49 0.78 -23.45 16 26 Si 0.84 18.91 26.90 -169.99 -4.57 14.34 16 27 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.26 -5.47 4.98 56.52 0.28 -5.19 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.69 7.20 -51.93 -0.37 0.32 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.01 7.83 -51.93 -0.41 0.60 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.49 6.90 -51.93 -0.36 0.14 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.41 7.63 7.13 -40.82 -0.29 7.34 16 39 H 0.06 0.98 6.59 -51.93 -0.34 0.64 16 40 H 0.07 1.55 7.75 -51.93 -0.40 1.15 16 41 H 0.12 1.62 6.67 -52.48 -0.35 1.27 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 44 H 0.11 1.43 8.05 -52.48 -0.42 1.01 16 45 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 46 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 47 H 0.03 0.63 7.18 -51.93 -0.37 0.25 16 48 H 0.07 1.49 6.26 -51.93 -0.33 1.17 16 49 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -30.06 381.42 -9.51 -39.56 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -7.86 Total: 11.34 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.22 Total: -1.35 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.16 Total: -49.75 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.76 Total: -19.89 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.57 Total: 14.34 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.06 -9.51 -39.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328465376.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.765 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds