Wall clock time and date at job start Tue Mar 31 2020 16:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 H 1.09009 * 109.46986 * 302.88600 * 3 2 1 5 5 O 1.42892 * 109.47576 * 62.88907 * 3 2 1 6 6 C 1.42896 * 114.00268 * 251.55051 * 5 3 2 7 7 C 1.50707 * 109.47086 * 182.89319 * 3 2 1 8 8 O 1.21281 * 119.99602 * 244.99922 * 7 3 2 9 9 N 1.34780 * 119.99915 * 64.99184 * 7 3 2 10 10 C 1.46499 * 119.99806 * 179.97438 * 9 7 3 11 11 C 1.52993 * 109.47171 * 185.47300 * 10 9 7 12 12 H 1.09002 * 109.44100 * 301.00510 * 11 10 9 13 13 C 1.50814 * 109.43772 * 181.08777 * 11 10 9 14 14 C 1.38839 * 117.80719 * 48.51239 * 13 11 10 15 15 C 1.37952 * 120.50644 * 179.34860 * 14 13 11 16 16 C 1.38267 * 119.71547 * 359.97438 * 15 14 13 17 17 C 1.37901 * 119.82992 * 0.22141 * 16 15 14 18 18 C 1.37668 * 122.34755 * 228.28430 * 13 11 10 19 19 C 1.50602 * 122.85446 * 1.61593 * 18 13 11 20 20 C 1.52782 * 110.86539 * 339.77109 * 19 18 13 21 21 N 1.46679 * 109.40469 * 60.90577 * 11 10 9 22 22 C 1.36935 * 121.33846 * 344.47335 * 21 11 10 23 23 H 1.08001 * 119.99813 * 42.62689 * 22 21 11 24 24 C 1.38806 * 120.00204 * 222.63344 * 22 21 11 25 25 N 1.31628 * 119.99761 * 207.63341 * 24 22 21 26 26 Si 1.86803 * 120.00445 * 27.63120 * 24 22 21 27 27 H 1.48493 * 109.46987 * 84.65609 * 26 24 22 28 28 H 1.48497 * 109.47254 * 204.66054 * 26 24 22 29 29 H 1.48503 * 109.46502 * 324.65922 * 26 24 22 30 30 H 1.09002 * 109.46894 * 175.34489 * 1 2 3 31 31 H 1.08997 * 109.47470 * 295.34634 * 1 2 3 32 32 H 1.09003 * 109.46950 * 55.34661 * 1 2 3 33 33 H 1.09004 * 109.47267 * 239.99642 * 2 1 3 34 34 H 1.09000 * 109.47189 * 119.99485 * 2 1 3 35 35 H 1.09000 * 109.47334 * 300.55814 * 6 5 3 36 36 H 1.09000 * 109.47022 * 60.55182 * 6 5 3 37 37 H 1.09000 * 109.47349 * 180.55223 * 6 5 3 38 38 H 0.96997 * 119.99844 * 0.02562 * 9 7 3 39 39 H 1.09006 * 109.46509 * 65.47301 * 10 9 7 40 40 H 1.09004 * 109.47123 * 305.47816 * 10 9 7 41 41 H 1.08005 * 119.74518 * 359.35018 * 14 13 11 42 42 H 1.07995 * 120.14633 * 180.02562 * 15 14 13 43 43 H 1.08006 * 120.08614 * 180.49126 * 16 15 14 44 44 H 1.08004 * 119.71111 * 180.02562 * 17 16 15 45 45 H 1.09000 * 109.19567 * 100.12561 * 19 18 13 46 46 H 1.09000 * 109.19899 * 219.41033 * 19 18 13 47 47 H 1.08998 * 109.76820 * 287.85210 * 20 19 18 48 48 H 1.09002 * 109.81387 * 167.08646 * 20 19 18 49 49 H 0.97002 * 119.99351 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6349 1.9711 -0.8631 5 8 1.6199 2.0963 1.1991 6 6 0.5989 3.0759 1.0000 7 6 3.5453 1.4431 -0.0717 8 8 4.1965 1.8712 0.8576 9 7 4.1679 0.9678 -1.1685 10 6 5.6313 0.9690 -1.2385 11 6 6.0758 0.5097 -2.6285 12 1 5.6887 -0.4909 -2.8210 13 6 7.5824 0.4855 -2.6911 14 6 8.2636 -0.1441 -1.6580 15 6 9.6415 -0.2106 -1.6659 16 6 10.3489 0.3539 -2.7112 17 6 9.6736 0.9831 -3.7358 18 6 8.2858 1.0562 -3.7278 19 6 7.6183 1.7818 -4.8662 20 6 6.1498 1.3766 -4.9833 21 7 5.5545 1.4373 -3.6381 22 6 4.5538 2.3238 -3.3416 23 1 4.5714 2.8653 -2.4072 24 6 3.5169 2.5266 -4.2417 25 7 2.8843 3.6806 -4.2680 26 14 3.0190 1.1617 -5.4160 27 1 2.0690 0.2454 -4.7356 28 1 2.3668 1.7516 -6.6126 29 1 4.2256 0.4032 -5.8332 30 1 -0.3633 -1.0243 -0.0834 31 1 -0.3634 0.4399 0.9287 32 1 -0.3633 0.5844 -0.8454 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 0.9601 3.8434 0.3155 36 1 -0.2850 2.5986 0.5768 37 1 0.3425 3.5330 1.9558 38 1 3.6471 0.6257 -1.9119 39 1 6.0314 0.2894 -0.4860 40 1 6.0031 1.9766 -1.0525 41 1 7.7104 -0.5853 -0.8420 42 1 10.1654 -0.7022 -0.8596 43 1 11.4274 0.2983 -2.7275 44 1 10.2281 1.4230 -4.5516 45 1 7.6809 2.8561 -4.6924 46 1 8.1323 1.5394 -5.7963 47 1 6.0775 0.3613 -5.3730 48 1 5.6285 2.0649 -5.6486 49 1 2.1599 3.8224 -4.8973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328465376.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:19 Heat of formation + Delta-G solvation = -47.761837 kcal Electronic energy + Delta-G solvation = -30159.129378 eV Core-core repulsion = 26279.175020 eV Total energy + Delta-G solvation = -3879.954359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.32246 -40.63756 -38.74482 -37.85917 -35.78156 -34.45388 -34.31639 -33.29495 -32.00733 -30.39558 -29.35093 -28.08982 -26.91923 -25.82750 -24.31277 -23.51390 -23.05591 -22.27719 -21.38609 -20.71617 -18.81275 -18.17242 -17.91760 -17.38618 -17.26327 -16.73748 -16.51616 -16.31953 -16.02841 -15.64490 -15.46550 -15.18064 -14.97567 -14.80675 -14.69456 -14.27874 -14.19764 -13.90689 -13.83283 -13.57516 -13.51533 -13.33783 -13.00090 -12.80884 -12.61473 -12.59670 -12.52453 -12.37191 -12.31869 -12.07802 -11.78375 -11.62901 -11.50949 -11.39894 -11.16558 -10.56510 -10.32191 -9.88393 -9.60721 -9.37504 -8.64105 -8.15754 -5.56146 0.53559 0.56211 1.41663 1.50803 1.58112 1.66190 2.07623 2.50394 2.91725 2.95352 3.04733 3.32070 3.70013 3.85455 3.91408 3.94279 4.04159 4.05387 4.18321 4.29678 4.32156 4.37736 4.42031 4.45473 4.48743 4.52064 4.55732 4.63465 4.73987 4.76716 4.81918 4.83508 4.87537 5.00884 5.03370 5.10310 5.12253 5.18229 5.21409 5.33501 5.37588 5.55310 5.65192 5.68768 5.86014 5.97098 6.04259 6.21669 6.32504 6.68184 6.95378 7.32893 7.61446 8.14768 9.01844 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011445 B = 0.004729 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.000306 B = 5919.730373 C = 7493.785328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.077 3.923 4 H 0.085 0.915 5 O -0.381 6.381 6 C 0.023 3.977 7 C 0.500 3.500 8 O -0.587 6.587 9 N -0.685 5.685 10 C 0.149 3.851 11 C 0.198 3.802 12 H 0.061 0.939 13 C -0.101 4.101 14 C -0.126 4.126 15 C -0.128 4.128 16 C -0.123 4.123 17 C -0.132 4.132 18 C -0.075 4.075 19 C -0.095 4.095 20 C 0.140 3.860 21 N -0.608 5.608 22 C -0.245 4.245 23 H 0.038 0.962 24 C 0.004 3.996 25 N -0.934 5.934 26 Si 0.905 3.095 27 H -0.276 1.276 28 H -0.311 1.311 29 H -0.237 1.237 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.029 0.971 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.410 0.590 39 H 0.078 0.922 40 H 0.032 0.968 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.057 0.943 46 H 0.090 0.910 47 H 0.045 0.955 48 H 0.051 0.949 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -10.863 2.374 11.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C 0.016 3.984 4 H 0.103 0.897 5 O -0.299 6.299 6 C -0.073 4.073 7 C 0.287 3.713 8 O -0.468 6.468 9 N -0.336 5.336 10 C 0.025 3.975 11 C 0.092 3.908 12 H 0.078 0.922 13 C -0.103 4.103 14 C -0.144 4.144 15 C -0.146 4.146 16 C -0.141 4.141 17 C -0.150 4.150 18 C -0.075 4.075 19 C -0.133 4.133 20 C 0.015 3.985 21 N -0.333 5.333 22 C -0.375 4.375 23 H 0.056 0.944 24 C -0.195 4.195 25 N -0.576 5.576 26 Si 0.731 3.269 27 H -0.202 1.202 28 H -0.239 1.239 29 H -0.161 1.161 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.247 0.753 39 H 0.096 0.904 40 H 0.050 0.950 41 H 0.148 0.852 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.255 -10.493 3.139 11.750 hybrid contribution -0.919 0.319 -1.291 1.616 sum 3.337 -10.173 1.848 10.865 Atomic orbital electron populations 1.21758 0.93193 1.03248 1.02189 1.21857 0.98508 0.92437 1.03574 1.22063 0.90150 0.96911 0.89306 0.89682 1.87913 1.57428 1.55079 1.29452 1.23114 0.90146 0.90652 1.03414 1.21110 0.91099 0.77068 0.82057 1.90604 1.68365 1.48568 1.39240 1.45840 1.07544 1.62177 1.18049 1.21194 0.80079 1.00002 0.96269 1.19684 0.89486 0.93318 0.88283 0.92186 1.20040 0.95365 0.99334 0.95579 1.21317 0.95436 0.99777 0.97888 1.21343 0.93588 1.00266 0.99391 1.21367 1.00949 0.97799 0.93954 1.21414 0.92980 1.00472 1.00106 1.19679 0.94119 0.97648 0.96047 1.20901 0.96861 0.99003 0.96575 1.21392 0.91811 0.98594 0.86670 1.44330 1.40332 1.40741 1.07861 1.18316 0.99531 1.14703 1.04926 0.94448 1.26027 0.96562 0.97455 0.99445 1.70100 1.25357 1.23266 1.38874 0.86461 0.79917 0.81987 0.78525 1.20214 1.23852 1.16094 0.90298 0.91951 0.92669 0.89673 0.90672 0.95230 0.91679 0.87526 0.75302 0.90417 0.94973 0.85226 0.83663 0.83523 0.84689 0.92414 0.89152 0.93721 0.93029 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.96 71.98 0.64 -2.52 16 2 C -0.13 -3.36 5.62 30.59 0.17 -3.19 16 3 C 0.08 2.69 2.68 29.85 0.08 2.77 16 4 H 0.09 3.09 7.64 -2.38 -0.02 3.07 16 5 O -0.38 -13.54 9.48 -129.99 -1.23 -14.78 16 6 C 0.02 0.63 10.41 113.37 1.18 1.81 16 7 C 0.50 20.90 7.18 87.66 0.63 21.53 16 8 O -0.59 -28.92 16.50 15.96 0.26 -28.66 16 9 N -0.69 -26.82 3.57 -463.05 -1.65 -28.47 16 10 C 0.15 5.73 4.15 86.38 0.36 6.09 16 11 C 0.20 7.23 3.04 44.24 0.13 7.36 16 12 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 13 C -0.10 -3.36 5.44 -19.82 -0.11 -3.47 16 14 C -0.13 -3.51 9.05 22.35 0.20 -3.31 16 15 C -0.13 -2.99 10.05 22.21 0.22 -2.76 16 16 C -0.12 -2.77 10.04 22.20 0.22 -2.55 16 17 C -0.13 -3.44 9.59 22.37 0.21 -3.22 16 18 C -0.07 -2.40 5.76 -19.85 -0.11 -2.51 16 19 C -0.09 -3.15 5.86 29.74 0.17 -2.98 16 20 C 0.14 5.41 4.34 86.17 0.37 5.79 16 21 N -0.61 -25.83 2.40 -680.14 -1.63 -27.46 16 22 C -0.25 -12.38 7.00 84.03 0.59 -11.79 16 23 H 0.04 2.22 6.51 -2.91 -0.02 2.21 16 24 C 0.00 0.19 5.02 84.86 0.43 0.62 16 25 N -0.93 -53.50 13.97 21.65 0.30 -53.19 16 26 Si 0.90 39.46 26.90 68.60 1.85 41.30 16 27 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 28 H -0.31 -14.31 7.11 99.48 0.71 -13.61 16 29 H -0.24 -9.49 4.98 99.48 0.50 -8.99 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.32 7.20 -2.39 -0.02 1.30 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 2.12 7.83 -2.39 -0.02 2.10 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 1.49 6.90 -2.39 -0.02 1.47 16 37 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.41 15.60 7.13 -92.71 -0.66 14.94 16 39 H 0.08 2.66 6.59 -2.38 -0.02 2.64 16 40 H 0.03 1.48 7.75 -2.38 -0.02 1.46 16 41 H 0.13 3.25 6.67 -2.91 -0.02 3.23 16 42 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 43 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 44 H 0.14 2.90 8.05 -2.91 -0.02 2.87 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.09 2.44 8.11 -2.39 -0.02 2.42 16 47 H 0.04 1.63 7.18 -2.39 -0.02 1.61 16 48 H 0.05 2.17 6.26 -2.39 -0.01 2.15 16 49 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -68.52 381.42 3.38 -65.15 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: 0.08 Total: 38.43 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 5.40 Total: 7.67 kcal Atomic # 7 Polarization: -106.14 SS G_CDS: -2.98 Total: -109.12 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -0.97 Total: -43.43 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.85 Total: 41.30 kcal Total: -68.52 3.38 -65.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328465376.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.383 kcal (2) G-P(sol) polarization free energy of solvation -68.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds