Wall clock time and date at job start Tue Mar 31 2020 16:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47520 * 2 1 4 4 N 1.46501 * 109.47410 * 179.97438 * 3 2 1 5 5 C 1.46493 * 119.99949 * 271.61707 * 4 3 2 6 6 C 1.50695 * 109.47416 * 270.00117 * 5 4 3 7 7 O 1.21286 * 119.99767 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00257 * 180.02562 * 6 5 4 9 9 C 1.46507 * 120.00329 * 179.97438 * 8 6 5 10 10 C 1.46504 * 120.00307 * 359.97438 * 8 6 5 11 11 C 1.34781 * 119.99835 * 91.61493 * 4 3 2 12 12 O 1.21276 * 120.00019 * 185.07038 * 11 4 3 13 13 C 1.50696 * 119.99953 * 5.07220 * 11 4 3 14 14 H 1.09001 * 109.47718 * 331.91605 * 13 11 4 15 15 C 1.50700 * 109.47259 * 91.91674 * 13 11 4 16 16 H 1.08001 * 120.00023 * 35.35878 * 15 13 11 17 17 C 1.37874 * 120.00490 * 215.35446 * 15 13 11 18 18 N 1.31508 * 120.00458 * 175.86364 * 17 15 13 19 19 Si 1.86806 * 119.99834 * 355.86217 * 17 15 13 20 20 H 1.48502 * 109.47105 * 94.24933 * 19 17 15 21 21 H 1.48492 * 109.47063 * 214.25321 * 19 17 15 22 22 H 1.48501 * 109.47129 * 334.25396 * 19 17 15 23 23 C 1.50706 * 109.46971 * 211.91583 * 13 11 4 24 24 C 1.38231 * 119.99806 * 111.30530 * 23 13 11 25 25 C 1.38229 * 120.00064 * 180.02562 * 24 23 13 26 26 C 1.38241 * 119.99767 * 359.95112 * 25 24 23 27 27 C 1.38231 * 120.00214 * 359.97438 * 26 25 24 28 28 C 1.38231 * 119.99899 * 291.28058 * 23 13 11 29 29 H 1.08997 * 109.47527 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46791 * 300.00632 * 1 2 3 31 31 H 1.09006 * 109.46907 * 59.99811 * 1 2 3 32 32 H 1.09001 * 109.47125 * 239.99795 * 2 1 3 33 33 H 1.09003 * 109.47276 * 119.99826 * 2 1 3 34 34 H 1.09001 * 109.47089 * 59.99772 * 3 2 1 35 35 H 1.09003 * 109.46704 * 300.00176 * 3 2 1 36 36 H 1.09003 * 109.47082 * 30.00238 * 5 4 3 37 37 H 1.09006 * 109.47069 * 149.99409 * 5 4 3 38 38 H 1.08994 * 109.46857 * 89.99679 * 9 8 6 39 39 H 1.08995 * 109.47166 * 210.00045 * 9 8 6 40 40 H 1.09000 * 109.46596 * 330.00157 * 9 8 6 41 41 H 1.09002 * 109.46470 * 359.97438 * 10 8 6 42 42 H 1.08995 * 109.47241 * 119.99735 * 10 8 6 43 43 H 1.09000 * 109.47192 * 240.00407 * 10 8 6 44 44 H 0.97004 * 120.00294 * 180.02562 * 18 17 15 45 45 H 1.07998 * 120.00127 * 359.96996 * 24 23 13 46 46 H 1.08003 * 120.00808 * 179.97438 * 25 24 23 47 47 H 1.08003 * 119.99746 * 179.72094 * 26 25 24 48 48 H 1.07997 * 120.00576 * 179.97438 * 27 26 25 49 49 H 1.07998 * 119.99985 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2370 1.4068 1.2691 6 6 4.4880 2.8148 1.7440 7 8 4.0946 3.7555 1.0872 8 7 5.1505 3.0287 2.8980 9 6 5.3950 4.3976 3.3594 10 6 5.6261 1.8925 3.6911 11 6 4.1795 1.4752 -1.1659 12 8 5.3887 1.3824 -1.1701 13 6 3.4309 1.6270 -2.4649 14 1 2.4295 1.2099 -2.3583 15 6 3.3312 3.0883 -2.8194 16 1 4.1457 3.7577 -2.5851 17 6 2.2001 3.5709 -3.4429 18 7 2.0781 4.8589 -3.6789 19 14 0.8408 2.3952 -3.9524 20 1 -0.1868 2.3330 -2.8822 21 1 0.2165 2.8760 -5.2110 22 1 1.4124 1.0418 -4.1690 23 6 4.1666 0.8943 -3.5572 24 6 3.6175 -0.2442 -4.1169 25 6 4.2924 -0.9167 -5.1184 26 6 5.5161 -0.4500 -5.5609 27 6 6.0645 0.6893 -5.0024 28 6 5.3902 1.3609 -3.9998 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.6476 0.8718 2.0138 37 1 5.1895 0.8967 1.1248 38 1 4.5656 4.7228 3.9873 39 1 6.3200 4.4271 3.9352 40 1 5.4812 5.0610 2.4989 41 1 5.3530 0.9622 3.1931 42 1 6.7102 1.9472 3.7905 43 1 5.1686 1.9227 4.6800 44 1 1.2821 5.1984 -4.1172 45 1 2.6615 -0.6088 -3.7710 46 1 3.8637 -1.8064 -5.5554 47 1 6.0456 -0.9780 -6.3403 48 1 7.0207 1.0537 -5.3478 49 1 5.8187 2.2508 -3.5631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361344181.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:30 Heat of formation + Delta-G solvation = -36.261071 kcal Electronic energy + Delta-G solvation = -30249.441913 eV Core-core repulsion = 26369.986265 eV Total energy + Delta-G solvation = -3879.455648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.10401 -39.04450 -37.89399 -35.72523 -35.28078 -33.59426 -32.65937 -31.45092 -30.08747 -29.45431 -27.90591 -27.14638 -25.87404 -25.09088 -23.28199 -21.80147 -21.54957 -20.92881 -19.38792 -18.18232 -17.19992 -16.92091 -16.53439 -16.30190 -15.90268 -15.52314 -15.16980 -14.64723 -14.39550 -14.11688 -13.98672 -13.82786 -13.32381 -13.20916 -13.00011 -12.72280 -12.66508 -12.64747 -12.54637 -12.50169 -12.11188 -11.97162 -11.91683 -11.83356 -11.70170 -11.31372 -11.19132 -11.00100 -10.93384 -10.45858 -10.43972 -10.13824 -9.87586 -9.70807 -9.45414 -8.86319 -8.63658 -8.61610 -8.13209 -8.07336 -7.77088 -6.16841 -4.18496 2.17518 2.25368 2.88621 2.97007 3.17139 3.30462 3.32605 3.60462 3.63323 4.30959 4.64424 4.70852 4.96782 5.06903 5.14078 5.15206 5.21323 5.24628 5.34094 5.42301 5.47061 5.51853 5.57756 5.59105 5.64305 5.65632 5.75555 5.87857 5.88449 5.98945 6.01184 6.07053 6.20634 6.24968 6.27642 6.37255 6.47940 6.49935 6.54284 6.78200 6.91309 6.96855 7.20724 7.32648 7.39110 7.44251 7.67398 7.83676 7.99912 8.38714 8.43708 8.88902 9.04921 9.39495 10.94794 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.004891 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.582646 B = 5724.004599 C = 6310.372773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.144 4.144 3 C 0.110 3.890 4 N -0.600 5.600 5 C 0.101 3.899 6 C 0.487 3.513 7 O -0.502 6.502 8 N -0.631 5.631 9 C 0.088 3.912 10 C 0.079 3.921 11 C 0.548 3.452 12 O -0.553 6.553 13 C 0.037 3.963 14 H 0.060 0.940 15 C -0.496 4.496 16 H 0.082 0.918 17 C 0.084 3.916 18 N -0.881 5.881 19 Si 0.851 3.149 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.247 1.247 23 C -0.040 4.040 24 C -0.131 4.131 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.134 4.134 28 C -0.066 4.066 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.267 0.733 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.110 0.890 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.393 -10.964 12.305 16.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.183 4.183 3 C -0.013 4.013 4 N -0.332 5.332 5 C -0.027 4.027 6 C 0.273 3.727 7 O -0.374 6.374 8 N -0.369 5.369 9 C -0.055 4.055 10 C -0.065 4.065 11 C 0.339 3.661 12 O -0.430 6.430 13 C 0.015 3.985 14 H 0.078 0.922 15 C -0.534 4.534 16 H 0.100 0.900 17 C -0.120 4.120 18 N -0.517 5.517 19 Si 0.677 3.323 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.170 1.170 23 C -0.041 4.041 24 C -0.150 4.150 25 C -0.153 4.153 26 C -0.160 4.160 27 C -0.152 4.152 28 C -0.084 4.084 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.693 -10.320 11.820 15.783 hybrid contribution -0.824 -0.304 -0.152 0.891 sum 0.869 -10.624 11.668 15.804 Atomic orbital electron populations 1.21719 0.95333 1.01590 1.02287 1.22013 0.96065 0.97769 1.02413 1.21676 0.79238 0.95891 1.04480 1.47544 1.06444 1.74983 1.04223 1.21180 1.00009 0.93586 0.87890 1.21573 0.77966 0.93072 0.80063 1.90831 1.48635 1.44108 1.53818 1.47819 1.58419 1.07172 1.23487 1.21547 1.00209 0.83250 1.00511 1.21793 0.99749 0.89123 0.95792 1.21258 0.87727 0.71783 0.85284 1.90548 1.14818 1.50303 1.87359 1.18400 0.94460 0.98602 0.87015 0.92211 1.20443 1.04624 0.88742 1.39575 0.89987 1.24949 0.97519 0.94827 0.94734 1.69871 1.28495 1.12317 1.41008 0.87220 0.82673 0.83302 0.79073 1.19760 1.20969 1.17041 1.20219 0.94217 0.92346 0.97357 1.21031 0.99650 0.95925 0.98357 1.20871 0.95872 1.00003 0.98517 1.20874 0.96488 0.97665 1.00955 1.21069 0.99860 0.96363 0.97891 1.20991 0.94121 0.98760 0.94494 0.92614 0.92625 0.92309 0.91488 0.92025 0.91141 0.88489 0.88464 0.87312 0.93134 0.91672 0.90489 0.90380 0.92155 0.92274 0.92300 0.87248 0.87367 0.87412 0.87140 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.14 -1.93 6.16 -26.73 -0.16 -2.10 16 3 C 0.11 1.88 5.03 -4.04 -0.02 1.86 16 4 N -0.60 -11.37 1.96 -175.06 -0.34 -11.72 16 5 C 0.10 1.54 4.24 -5.20 -0.02 1.52 16 6 C 0.49 8.49 7.74 -10.99 -0.09 8.40 16 7 O -0.50 -11.54 16.01 5.55 0.09 -11.45 16 8 N -0.63 -8.30 3.27 -189.52 -0.62 -8.93 16 9 C 0.09 1.04 10.48 59.85 0.63 1.67 16 10 C 0.08 0.66 10.60 59.85 0.63 1.29 16 11 C 0.55 12.49 6.67 -10.99 -0.07 12.42 16 12 O -0.55 -13.66 14.87 5.56 0.08 -13.58 16 13 C 0.04 0.87 1.07 -94.07 -0.10 0.77 16 14 H 0.06 1.33 3.12 -51.93 -0.16 1.17 16 15 C -0.50 -13.88 7.95 -34.44 -0.27 -14.16 16 16 H 0.08 2.64 8.06 -52.49 -0.42 2.22 16 17 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 18 N -0.88 -26.57 13.96 55.43 0.77 -25.80 16 19 Si 0.85 20.06 26.54 -169.99 -4.51 15.54 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.25 -5.40 4.76 56.52 0.27 -5.14 16 23 C -0.04 -0.92 4.39 -104.62 -0.46 -1.38 16 24 C -0.13 -2.66 8.55 -39.59 -0.34 -3.00 16 25 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 26 C -0.14 -2.50 10.05 -39.58 -0.40 -2.89 16 27 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 28 C -0.07 -1.49 8.09 -39.58 -0.32 -1.81 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.96 7.91 -51.93 -0.41 0.55 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 35 H 0.10 1.96 5.64 -51.93 -0.29 1.67 16 36 H 0.10 1.06 7.72 -51.93 -0.40 0.66 16 37 H 0.11 1.63 7.00 -51.93 -0.36 1.27 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.58 8.07 -51.93 -0.42 0.16 16 40 H 0.08 1.13 7.42 -51.93 -0.39 0.74 16 41 H 0.08 0.57 5.77 -51.93 -0.30 0.27 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.11 2.04 7.30 -52.49 -0.38 1.65 16 46 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 47 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 48 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 49 H 0.12 3.02 7.59 -52.49 -0.40 2.62 16 LS Contribution 395.24 15.07 5.96 5.96 Total: -1.00 -36.00 395.24 -7.95 -43.95 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.85 Total: 8.41 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -1.52 Total: -2.39 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: -0.19 Total: -46.44 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.17 Total: -25.03 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.51 Total: 15.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.00 -7.95 -43.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361344181.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.686 kcal (2) G-P(sol) polarization free energy of solvation -36.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds