Wall clock time and date at job start Tue Mar 31 2020 16:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47520 * 2 1 4 4 N 1.46501 * 109.47410 * 179.97438 * 3 2 1 5 5 C 1.46493 * 119.99949 * 271.61707 * 4 3 2 6 6 C 1.50695 * 109.47416 * 270.00117 * 5 4 3 7 7 O 1.21286 * 119.99767 * 359.97438 * 6 5 4 8 8 N 1.34768 * 120.00257 * 180.02562 * 6 5 4 9 9 C 1.46507 * 120.00329 * 179.97438 * 8 6 5 10 10 C 1.46504 * 120.00307 * 359.97438 * 8 6 5 11 11 C 1.34781 * 119.99835 * 91.61493 * 4 3 2 12 12 O 1.21276 * 120.00019 * 185.07038 * 11 4 3 13 13 C 1.50696 * 119.99953 * 5.07220 * 11 4 3 14 14 H 1.09001 * 109.47718 * 331.91605 * 13 11 4 15 15 C 1.50700 * 109.47259 * 91.91674 * 13 11 4 16 16 H 1.08001 * 120.00023 * 35.35878 * 15 13 11 17 17 C 1.37874 * 120.00490 * 215.35446 * 15 13 11 18 18 N 1.31508 * 120.00458 * 175.86364 * 17 15 13 19 19 Si 1.86806 * 119.99834 * 355.86217 * 17 15 13 20 20 H 1.48502 * 109.47105 * 94.24933 * 19 17 15 21 21 H 1.48492 * 109.47063 * 214.25321 * 19 17 15 22 22 H 1.48501 * 109.47129 * 334.25396 * 19 17 15 23 23 C 1.50706 * 109.46971 * 211.91583 * 13 11 4 24 24 C 1.38231 * 119.99806 * 111.30530 * 23 13 11 25 25 C 1.38229 * 120.00064 * 180.02562 * 24 23 13 26 26 C 1.38241 * 119.99767 * 359.95112 * 25 24 23 27 27 C 1.38231 * 120.00214 * 359.97438 * 26 25 24 28 28 C 1.38231 * 119.99899 * 291.28058 * 23 13 11 29 29 H 1.08997 * 109.47527 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46791 * 300.00632 * 1 2 3 31 31 H 1.09006 * 109.46907 * 59.99811 * 1 2 3 32 32 H 1.09001 * 109.47125 * 239.99795 * 2 1 3 33 33 H 1.09003 * 109.47276 * 119.99826 * 2 1 3 34 34 H 1.09001 * 109.47089 * 59.99772 * 3 2 1 35 35 H 1.09003 * 109.46704 * 300.00176 * 3 2 1 36 36 H 1.09003 * 109.47082 * 30.00238 * 5 4 3 37 37 H 1.09006 * 109.47069 * 149.99409 * 5 4 3 38 38 H 1.08994 * 109.46857 * 89.99679 * 9 8 6 39 39 H 1.08995 * 109.47166 * 210.00045 * 9 8 6 40 40 H 1.09000 * 109.46596 * 330.00157 * 9 8 6 41 41 H 1.09002 * 109.46470 * 359.97438 * 10 8 6 42 42 H 1.08995 * 109.47241 * 119.99735 * 10 8 6 43 43 H 1.09000 * 109.47192 * 240.00407 * 10 8 6 44 44 H 0.97004 * 120.00294 * 180.02562 * 18 17 15 45 45 H 1.07998 * 120.00127 * 359.96996 * 24 23 13 46 46 H 1.08003 * 120.00808 * 179.97438 * 25 24 23 47 47 H 1.08003 * 119.99746 * 179.72094 * 26 25 24 48 48 H 1.07997 * 120.00576 * 179.97438 * 27 26 25 49 49 H 1.07998 * 119.99985 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2370 1.4068 1.2691 6 6 4.4880 2.8148 1.7440 7 8 4.0946 3.7555 1.0872 8 7 5.1505 3.0287 2.8980 9 6 5.3950 4.3976 3.3594 10 6 5.6261 1.8925 3.6911 11 6 4.1795 1.4752 -1.1659 12 8 5.3887 1.3824 -1.1701 13 6 3.4309 1.6270 -2.4649 14 1 2.4295 1.2099 -2.3583 15 6 3.3312 3.0883 -2.8194 16 1 4.1457 3.7577 -2.5851 17 6 2.2001 3.5709 -3.4429 18 7 2.0781 4.8589 -3.6789 19 14 0.8408 2.3952 -3.9524 20 1 -0.1868 2.3330 -2.8822 21 1 0.2165 2.8760 -5.2110 22 1 1.4124 1.0418 -4.1690 23 6 4.1666 0.8943 -3.5572 24 6 3.6175 -0.2442 -4.1169 25 6 4.2924 -0.9167 -5.1184 26 6 5.5161 -0.4500 -5.5609 27 6 6.0645 0.6893 -5.0024 28 6 5.3902 1.3609 -3.9998 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.6476 0.8718 2.0138 37 1 5.1895 0.8967 1.1248 38 1 4.5656 4.7228 3.9873 39 1 6.3200 4.4271 3.9352 40 1 5.4812 5.0610 2.4989 41 1 5.3530 0.9622 3.1931 42 1 6.7102 1.9472 3.7905 43 1 5.1686 1.9227 4.6800 44 1 1.2821 5.1984 -4.1172 45 1 2.6615 -0.6088 -3.7710 46 1 3.8637 -1.8064 -5.5554 47 1 6.0456 -0.9780 -6.3403 48 1 7.0207 1.0537 -5.3478 49 1 5.8187 2.2508 -3.5631 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361344181.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:28 Heat of formation + Delta-G solvation = -60.524748 kcal Electronic energy + Delta-G solvation = -30250.494065 eV Core-core repulsion = 26369.986265 eV Total energy + Delta-G solvation = -3880.507800 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.60525 -40.53195 -39.41909 -37.19136 -36.54125 -35.52286 -33.90991 -33.35825 -31.62586 -30.71071 -29.39944 -28.29336 -27.06748 -26.48096 -25.07983 -23.36037 -22.77305 -22.35842 -20.77987 -19.67632 -19.14584 -18.25700 -18.22342 -17.71401 -17.32045 -16.74735 -16.59068 -16.32201 -15.70573 -15.61046 -15.51832 -15.27285 -14.89591 -14.46976 -14.43902 -14.32030 -14.15455 -14.07868 -13.67899 -13.45703 -13.37831 -13.33785 -13.14453 -13.05696 -12.93806 -12.82633 -12.76003 -12.52937 -12.22469 -12.09559 -11.89557 -11.65493 -11.60302 -11.43934 -11.16265 -10.81506 -10.59625 -9.71508 -9.63452 -9.60578 -9.37256 -8.35481 -6.43814 0.63157 0.70285 1.28650 1.35168 1.46374 1.54633 1.62825 2.05294 2.27980 2.29921 2.97979 3.13341 3.58777 3.81711 3.95934 4.08762 4.13201 4.19727 4.24903 4.28179 4.33527 4.38296 4.40935 4.42600 4.47933 4.50249 4.52169 4.53618 4.75639 4.77253 4.82910 4.84919 4.90971 4.91497 5.02622 5.17095 5.21577 5.22356 5.33044 5.38907 5.45162 5.48604 5.60692 5.70254 5.75845 5.96523 6.16922 6.28812 6.30272 6.42675 6.59949 7.14802 7.18516 7.32812 8.81471 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.004891 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.582646 B = 5724.004599 C = 6310.372773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C 0.105 3.895 4 N -0.598 5.598 5 C 0.099 3.901 6 C 0.477 3.523 7 O -0.579 6.579 8 N -0.624 5.624 9 C 0.084 3.916 10 C 0.069 3.931 11 C 0.539 3.461 12 O -0.585 6.585 13 C 0.043 3.957 14 H 0.076 0.924 15 C -0.495 4.495 16 H 0.009 0.991 17 C 0.023 3.977 18 N -0.941 5.941 19 Si 0.921 3.079 20 H -0.247 1.247 21 H -0.287 1.287 22 H -0.216 1.216 23 C -0.069 4.069 24 C -0.140 4.140 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.138 4.138 28 C -0.101 4.101 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.153 0.847 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.037 0.963 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.130 0.870 46 H 0.154 0.846 47 H 0.152 0.848 48 H 0.129 0.871 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.113 -16.295 13.329 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C -0.018 4.018 4 N -0.328 5.328 5 C -0.027 4.027 6 C 0.265 3.735 7 O -0.457 6.457 8 N -0.359 5.359 9 C -0.059 4.059 10 C -0.072 4.072 11 C 0.330 3.670 12 O -0.465 6.465 13 C 0.022 3.978 14 H 0.094 0.906 15 C -0.533 4.533 16 H 0.027 0.973 17 C -0.175 4.175 18 N -0.579 5.579 19 Si 0.742 3.258 20 H -0.172 1.172 21 H -0.214 1.214 22 H -0.138 1.138 23 C -0.070 4.070 24 C -0.158 4.158 25 C -0.141 4.141 26 C -0.149 4.149 27 C -0.156 4.156 28 C -0.119 4.119 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.171 0.829 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.056 0.944 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.148 0.852 46 H 0.172 0.828 47 H 0.170 0.830 48 H 0.147 0.853 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.437 -15.700 12.945 20.353 hybrid contribution -0.221 1.419 -0.341 1.476 sum 0.216 -14.281 12.605 19.049 Atomic orbital electron populations 1.21734 0.93882 1.03124 1.02044 1.21951 0.97154 0.94569 1.03531 1.21838 0.78011 0.98701 1.03234 1.47568 1.07476 1.73297 1.04492 1.21535 1.00946 0.92879 0.87299 1.22037 0.77702 0.93128 0.80677 1.90813 1.52278 1.46199 1.56420 1.47972 1.56406 1.09097 1.22468 1.21657 1.02629 0.82238 0.99344 1.22176 1.00923 0.87608 0.96493 1.21143 0.87396 0.72008 0.86455 1.90506 1.15947 1.52027 1.88043 1.18244 0.95749 0.95533 0.88304 0.90576 1.20342 1.02596 0.90693 1.39672 0.97270 1.25943 1.00499 0.96708 0.94352 1.70062 1.29800 1.15091 1.42934 0.86136 0.79072 0.81751 0.78858 1.17161 1.21352 1.13832 1.20180 0.94704 0.94314 0.97809 1.21292 1.00613 0.95035 0.98835 1.21393 0.95356 1.00564 0.96820 1.21366 0.96448 0.96281 1.00793 1.21329 1.00486 0.96944 0.96810 1.20838 0.95532 0.98644 0.96931 0.90121 0.91441 0.94102 0.92301 0.88941 0.89944 0.92344 0.82942 0.86837 0.91800 0.87962 0.94447 0.89025 0.90676 0.89218 0.92200 0.85224 0.82816 0.83012 0.85259 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.91 71.98 0.71 -2.34 16 2 C -0.13 -3.19 6.16 30.59 0.19 -3.00 16 3 C 0.10 3.53 5.03 86.38 0.43 3.97 16 4 N -0.60 -23.10 1.96 -826.16 -1.62 -24.72 16 5 C 0.10 2.96 4.24 85.63 0.36 3.33 16 6 C 0.48 17.14 7.74 87.66 0.68 17.82 16 7 O -0.58 -28.93 16.01 -3.05 -0.05 -28.98 16 8 N -0.62 -16.02 3.27 -871.90 -2.85 -18.88 16 9 C 0.08 2.01 10.48 127.77 1.34 3.35 16 10 C 0.07 0.93 10.60 127.77 1.35 2.29 16 11 C 0.54 25.97 6.67 87.66 0.58 26.55 16 12 O -0.58 -30.95 14.87 -3.02 -0.04 -30.99 16 13 C 0.04 2.14 1.07 -13.03 -0.01 2.13 16 14 H 0.08 3.43 3.12 -2.39 -0.01 3.42 16 15 C -0.50 -30.35 7.95 25.60 0.20 -30.15 16 16 H 0.01 0.66 8.06 -2.91 -0.02 0.63 16 17 C 0.02 1.41 5.47 84.65 0.46 1.87 16 18 N -0.94 -61.23 13.96 21.45 0.30 -60.93 16 19 Si 0.92 42.36 26.54 68.60 1.82 44.18 16 20 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 21 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 22 H -0.22 -8.75 4.76 99.48 0.47 -8.28 16 23 C -0.07 -3.23 4.39 -19.87 -0.09 -3.31 16 24 C -0.14 -5.30 8.55 22.27 0.19 -5.11 16 25 C -0.12 -3.87 10.05 22.27 0.22 -3.65 16 26 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 27 C -0.14 -5.29 10.05 22.27 0.22 -5.07 16 28 C -0.10 -4.88 8.09 22.27 0.18 -4.69 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.06 1.52 7.91 -2.39 -0.02 1.50 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 2.54 8.08 -2.39 -0.02 2.52 16 35 H 0.06 2.42 5.64 -2.39 -0.01 2.41 16 36 H 0.15 2.77 7.72 -2.39 -0.02 2.75 16 37 H 0.11 3.32 7.00 -2.38 -0.02 3.30 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.10 1.66 8.07 -2.39 -0.02 1.64 16 40 H 0.04 1.19 7.42 -2.39 -0.02 1.18 16 41 H 0.09 1.00 5.77 -2.39 -0.01 0.99 16 42 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.27 16.20 8.31 -92.71 -0.77 15.43 16 45 H 0.13 4.31 7.30 -2.91 -0.02 4.28 16 46 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 47 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 48 H 0.13 4.31 8.06 -2.91 -0.02 4.28 16 49 H 0.08 4.30 7.59 -2.91 -0.02 4.27 16 Total: -1.00 -92.87 395.24 5.51 -87.36 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.70 Total: 32.89 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 7.26 Total: 0.07 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -4.18 Total: -104.52 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -0.09 Total: -59.98 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 1.82 Total: 44.18 kcal Total: -92.87 5.51 -87.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361344181.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.833 kcal (2) G-P(sol) polarization free energy of solvation -92.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds