Wall clock time and date at job start Tue Mar 31 2020 16:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52989 * 109.47127 * 2 1 4 4 N 1.46504 * 109.47364 * 184.63715 * 3 2 1 5 5 C 1.46494 * 120.00233 * 272.50051 * 4 3 2 6 6 C 1.50706 * 109.46840 * 269.99584 * 5 4 3 7 7 O 1.21280 * 120.00027 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99866 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00113 * 180.02562 * 8 6 5 10 10 C 1.46506 * 119.99867 * 359.97438 * 8 6 5 11 11 C 1.34776 * 119.99567 * 92.49220 * 4 3 2 12 12 O 1.21279 * 120.00429 * 4.91068 * 11 4 3 13 13 C 1.50706 * 119.99640 * 184.90369 * 11 4 3 14 14 H 1.08997 * 109.47145 * 36.54814 * 13 11 4 15 15 C 1.50697 * 109.47179 * 276.54324 * 13 11 4 16 16 H 1.08000 * 120.00030 * 117.02104 * 15 13 11 17 17 C 1.37884 * 120.00147 * 296.74095 * 15 13 11 18 18 N 1.31510 * 119.99542 * 352.73843 * 17 15 13 19 19 Si 1.86795 * 120.00112 * 172.73886 * 17 15 13 20 20 H 1.48503 * 109.46860 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47316 * 119.99904 * 19 17 15 22 22 H 1.48497 * 109.47389 * 240.00140 * 19 17 15 23 23 C 1.50702 * 109.46566 * 156.54433 * 13 11 4 24 24 C 1.38229 * 120.00304 * 319.99410 * 23 13 11 25 25 C 1.38238 * 120.00010 * 179.81212 * 24 23 13 26 26 C 1.38238 * 120.00057 * 0.40036 * 25 24 23 27 27 C 1.38232 * 119.99626 * 359.85483 * 26 25 24 28 28 C 1.38230 * 120.00352 * 359.95733 * 27 26 25 29 29 H 1.09005 * 109.46905 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47120 * 299.99899 * 1 2 3 31 31 H 1.09001 * 109.46821 * 60.00395 * 1 2 3 32 32 H 1.09005 * 109.46799 * 239.99621 * 2 1 3 33 33 H 1.09002 * 109.46655 * 120.00371 * 2 1 3 34 34 H 1.09004 * 109.47095 * 64.64124 * 3 2 1 35 35 H 1.09004 * 109.47378 * 304.64344 * 3 2 1 36 36 H 1.08996 * 109.47038 * 29.99256 * 5 4 3 37 37 H 1.08996 * 109.47242 * 149.99608 * 5 4 3 38 38 H 1.09004 * 109.47501 * 89.99831 * 9 8 6 39 39 H 1.09000 * 109.47514 * 209.99683 * 9 8 6 40 40 H 1.09001 * 109.47221 * 330.00002 * 9 8 6 41 41 H 1.08996 * 109.47269 * 0.02562 * 10 8 6 42 42 H 1.08998 * 109.46761 * 120.00640 * 10 8 6 43 43 H 1.09000 * 109.47050 * 239.99771 * 10 8 6 44 44 H 0.97010 * 119.99768 * 179.97438 * 18 17 15 45 45 H 1.08005 * 120.00192 * 0.02562 * 24 23 13 46 46 H 1.08002 * 120.00021 * 180.23150 * 25 24 23 47 47 H 1.07998 * 119.99808 * 179.83191 * 26 25 24 48 48 H 1.08004 * 119.99828 * 179.97438 * 27 26 25 49 49 H 1.08007 * 120.00240 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5008 1.4440 -0.1117 5 6 4.3277 1.3553 1.0943 6 6 4.6175 2.7422 1.6078 7 8 4.1770 3.7094 1.0236 8 7 5.3669 2.9077 2.7156 9 6 5.6482 4.2559 3.2151 10 6 5.8995 1.7393 3.4210 11 6 4.0838 1.5268 -1.3240 12 8 3.4031 1.6897 -2.3144 13 6 5.5817 1.4173 -1.4488 14 1 5.9543 0.6913 -0.7263 15 6 6.2078 2.7613 -1.1791 16 1 6.8715 2.8885 -0.3366 17 6 5.9380 3.8270 -2.0113 18 7 5.2520 3.6401 -3.1176 19 14 6.5467 5.5363 -1.5671 20 1 7.2873 5.4793 -0.2812 21 1 7.4486 6.0340 -2.6367 22 1 5.3876 6.4544 -1.4300 23 6 5.9380 0.9676 -2.8423 24 6 5.1767 0.0012 -3.4726 25 6 5.5013 -0.4085 -4.7523 26 6 6.5921 0.1424 -5.3986 27 6 7.3564 1.1051 -4.7663 28 6 7.0296 1.5175 -3.4881 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.7461 1.9317 0.9287 35 1 1.6103 1.9797 -0.8455 36 1 3.7959 0.7886 1.8586 37 1 5.2652 0.8529 0.8559 38 1 4.8699 4.5526 3.9183 39 1 6.6147 4.2625 3.7189 40 1 5.6691 4.9558 2.3798 41 1 5.5877 0.8307 2.9060 42 1 6.9881 1.7909 3.4392 43 1 5.5193 1.7270 4.4424 44 1 5.0618 4.3900 -3.7029 45 1 4.3263 -0.4314 -2.9665 46 1 4.9043 -1.1609 -5.2462 47 1 6.8472 -0.1797 -6.3974 48 1 8.2089 1.5352 -5.2711 49 1 7.6270 2.2694 -2.9939 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361344187.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:32 Heat of formation + Delta-G solvation = -47.161322 kcal Electronic energy + Delta-G solvation = -30897.700863 eV Core-core repulsion = 27017.772545 eV Total energy + Delta-G solvation = -3879.928318 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30491 -40.20703 -39.13464 -36.68915 -36.25695 -35.46692 -34.08832 -32.52256 -31.28417 -30.11493 -29.28455 -28.11203 -27.06997 -26.06396 -25.26308 -23.00805 -22.67919 -21.82199 -20.87502 -19.53393 -18.61350 -18.11459 -17.54030 -17.47523 -16.84872 -16.68427 -16.41926 -16.23753 -15.68596 -15.48518 -15.38575 -15.01052 -14.41533 -14.29416 -14.16963 -14.08735 -13.86864 -13.81925 -13.57280 -13.33369 -13.23372 -13.05017 -12.94639 -12.91754 -12.82084 -12.78277 -12.63833 -12.42166 -12.23952 -12.17112 -11.76130 -11.56494 -11.35506 -11.15209 -10.88026 -10.57001 -10.12119 -9.49368 -9.35973 -9.28139 -9.03524 -7.99077 -6.17949 0.93716 1.00798 1.26807 1.36668 1.38917 1.87435 2.01481 2.35490 2.51279 2.55994 3.28014 3.36326 3.81286 3.96838 4.14631 4.23095 4.29337 4.36702 4.39153 4.41151 4.47054 4.48682 4.51241 4.56269 4.58299 4.68133 4.74096 4.82889 4.88176 4.94100 4.96897 5.03549 5.05034 5.06812 5.17756 5.20077 5.31163 5.41920 5.52050 5.58140 5.68830 5.71072 5.91399 5.95131 5.99578 6.01990 6.45157 6.51293 6.57858 6.68401 6.94581 7.46553 7.48345 7.89130 8.92796 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009124 B = 0.006392 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3068.101893 B = 4379.482096 C = 6111.110440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.124 4.124 3 C 0.122 3.878 4 N -0.611 5.611 5 C 0.104 3.896 6 C 0.491 3.509 7 O -0.567 6.567 8 N -0.629 5.629 9 C 0.088 3.912 10 C 0.071 3.929 11 C 0.536 3.464 12 O -0.563 6.563 13 C 0.057 3.943 14 H 0.071 0.929 15 C -0.508 4.508 16 H 0.058 0.942 17 C 0.049 3.951 18 N -0.851 5.851 19 Si 0.922 3.078 20 H -0.265 1.265 21 H -0.281 1.281 22 H -0.310 1.310 23 C -0.022 4.022 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.144 4.144 27 C -0.150 4.150 28 C -0.073 4.073 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.140 0.860 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.094 0.906 40 H 0.032 0.968 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.247 0.753 45 H 0.094 0.906 46 H 0.128 0.872 47 H 0.135 0.865 48 H 0.122 0.878 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 -10.476 13.740 17.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C -0.001 4.001 4 N -0.344 5.344 5 C -0.023 4.023 6 C 0.278 3.722 7 O -0.444 6.444 8 N -0.365 5.365 9 C -0.055 4.055 10 C -0.070 4.070 11 C 0.327 3.673 12 O -0.440 6.440 13 C 0.036 3.964 14 H 0.088 0.912 15 C -0.546 4.546 16 H 0.076 0.924 17 C -0.157 4.157 18 N -0.485 5.485 19 Si 0.751 3.249 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.238 1.238 23 C -0.023 4.023 24 C -0.143 4.143 25 C -0.162 4.162 26 C -0.161 4.161 27 C -0.168 4.168 28 C -0.091 4.091 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.056 0.944 36 H 0.157 0.843 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.051 0.949 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.112 0.888 46 H 0.145 0.855 47 H 0.153 0.847 48 H 0.140 0.860 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.183 -9.782 12.712 16.041 hybrid contribution 0.025 2.101 -0.135 2.105 sum -0.158 -7.681 12.577 14.738 Atomic orbital electron populations 1.21664 0.94135 1.02595 1.01715 1.21797 0.96907 0.95301 1.02286 1.21329 0.80180 0.97654 1.00936 1.47682 1.05958 1.74994 1.05786 1.21585 0.98644 0.93383 0.88642 1.21776 0.77952 0.92945 0.79534 1.90715 1.52705 1.43441 1.57505 1.47909 1.52494 1.08592 1.27489 1.21544 1.01989 0.83454 0.98501 1.22113 1.00036 0.86915 0.97972 1.21460 0.91382 0.72805 0.81648 1.90559 1.66175 1.48892 1.38344 1.18010 0.88851 0.97072 0.92483 0.91162 1.20493 1.28975 0.92996 1.12147 0.92375 1.25342 0.95171 1.00535 0.94622 1.70325 1.37387 1.30085 1.10736 0.86054 0.77103 0.83311 0.78401 1.18875 1.20692 1.23791 1.19790 0.93405 0.92183 0.96907 1.20897 0.98421 0.98698 0.96320 1.21115 0.98394 1.01650 0.95001 1.21106 0.96404 0.98477 1.00151 1.21237 1.00996 0.99042 0.95537 1.20916 0.97094 0.96687 0.94420 0.90832 0.91441 0.94312 0.93915 0.89353 0.90796 0.94432 0.84277 0.86359 0.92045 0.88731 0.94909 0.88884 0.91092 0.89742 0.94336 0.88780 0.85456 0.84726 0.86011 0.87712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 9.91 71.98 0.71 -2.48 16 2 C -0.12 -3.32 6.26 30.59 0.19 -3.13 16 3 C 0.12 4.30 5.47 86.37 0.47 4.78 16 4 N -0.61 -23.96 1.96 -826.16 -1.62 -25.58 16 5 C 0.10 3.08 3.96 85.64 0.34 3.42 16 6 C 0.49 17.38 6.82 87.66 0.60 17.97 16 7 O -0.57 -27.26 15.70 -3.03 -0.05 -27.31 16 8 N -0.63 -16.70 3.27 -871.88 -2.85 -19.56 16 9 C 0.09 2.28 10.48 127.77 1.34 3.62 16 10 C 0.07 1.04 10.60 127.77 1.35 2.40 16 11 C 0.54 26.17 5.58 87.66 0.49 26.66 16 12 O -0.56 -32.47 13.41 -3.03 -0.04 -32.51 16 13 C 0.06 2.71 2.06 -13.03 -0.03 2.68 16 14 H 0.07 2.89 6.28 -2.39 -0.01 2.87 16 15 C -0.51 -26.26 5.98 25.60 0.15 -26.11 16 16 H 0.06 2.95 7.83 -2.91 -0.02 2.93 16 17 C 0.05 2.75 4.15 84.66 0.35 3.10 16 18 N -0.85 -51.45 9.86 21.45 0.21 -51.24 16 19 Si 0.92 47.22 29.54 68.60 2.03 49.25 16 20 H -0.26 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.28 -13.85 7.11 99.48 0.71 -13.15 16 22 H -0.31 -17.10 7.11 99.48 0.71 -16.39 16 23 C -0.02 -1.06 4.11 -19.87 -0.08 -1.14 16 24 C -0.13 -5.72 8.36 22.27 0.19 -5.54 16 25 C -0.14 -5.78 10.05 22.27 0.22 -5.55 16 26 C -0.14 -5.49 10.05 22.27 0.22 -5.27 16 27 C -0.15 -6.26 10.05 22.27 0.22 -6.04 16 28 C -0.07 -3.49 7.69 22.27 0.17 -3.32 16 29 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.07 2.34 8.09 -2.38 -0.02 2.32 16 35 H 0.04 1.64 7.29 -2.38 -0.02 1.62 16 36 H 0.14 2.64 7.72 -2.39 -0.02 2.62 16 37 H 0.12 3.25 5.49 -2.39 -0.01 3.24 16 38 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.09 1.79 8.07 -2.39 -0.02 1.77 16 40 H 0.03 1.12 7.42 -2.39 -0.02 1.11 16 41 H 0.09 1.07 5.77 -2.39 -0.01 1.06 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 45 H 0.09 4.29 7.08 -2.91 -0.02 4.27 16 46 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 47 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 48 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 49 H 0.10 5.29 6.27 -2.91 -0.02 5.27 16 Total: -1.00 -82.27 391.55 5.53 -76.75 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.93 Total: 24.15 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 6.92 Total: 6.04 kcal Atomic # 7 Polarization: -92.11 SS G_CDS: -4.26 Total: -96.37 kcal Atomic # 8 Polarization: -59.73 SS G_CDS: -0.09 Total: -59.82 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -82.27 5.53 -76.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361344187.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.585 kcal (2) G-P(sol) polarization free energy of solvation -82.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds