Wall clock time and date at job start Tue Mar 31 2020 16:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46790 * 2 1 4 4 N 1.46891 * 109.47317 * 119.99992 * 2 1 3 5 5 C 1.46848 * 111.00105 * 56.04695 * 4 2 1 6 6 C 1.53035 * 109.52732 * 174.16055 * 5 4 2 7 7 C 1.53120 * 109.27924 * 59.17505 * 6 5 4 8 8 C 1.53115 * 109.16173 * 302.34889 * 7 6 5 9 9 H 1.09002 * 109.50546 * 297.67119 * 8 7 6 10 10 N 1.46500 * 109.50277 * 177.59130 * 8 7 6 11 11 C 1.34773 * 120.00009 * 85.08228 * 10 8 7 12 12 O 1.21592 * 119.99922 * 359.71872 * 11 10 8 13 13 C 1.47532 * 120.00542 * 179.97438 * 11 10 8 14 14 C 1.39676 * 120.19358 * 359.97438 * 13 11 10 15 15 C 1.37825 * 119.91863 * 179.97438 * 14 13 11 16 16 C 1.38572 * 120.32252 * 0.02562 * 15 14 13 17 17 C 1.38024 * 120.40739 * 359.97438 * 16 15 14 18 18 C 1.38837 * 120.06808 * 359.75045 * 17 16 15 19 19 O 1.35517 * 120.16422 * 180.25258 * 18 17 16 20 20 C 1.34820 * 116.99760 * 354.39420 * 19 18 17 21 21 H 1.07999 * 119.99857 * 5.07217 * 20 19 18 22 22 C 1.38694 * 119.99726 * 185.06195 * 20 19 18 23 23 N 1.31518 * 120.00554 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99573 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46716 * 90.00759 * 24 22 20 26 26 H 1.48496 * 109.46964 * 210.00147 * 24 22 20 27 27 H 1.48496 * 109.47302 * 330.00650 * 24 22 20 28 28 C 1.46845 * 110.99887 * 291.79522 * 4 2 1 29 29 H 1.09002 * 109.46755 * 299.99630 * 1 2 3 30 30 H 1.08995 * 109.47199 * 59.99771 * 1 2 3 31 31 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46755 * 240.00370 * 2 1 3 33 33 H 1.09004 * 109.47103 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47184 * 300.00139 * 3 2 1 35 35 H 1.09001 * 109.47692 * 60.00641 * 3 2 1 36 36 H 1.08999 * 109.46638 * 54.13933 * 5 4 2 37 37 H 1.09002 * 109.45342 * 294.17045 * 5 4 2 38 38 H 1.08998 * 109.50241 * 299.23788 * 6 5 4 39 39 H 1.09000 * 109.50468 * 179.12031 * 6 5 4 40 40 H 1.09001 * 109.52380 * 182.44108 * 7 6 5 41 41 H 1.08998 * 109.52112 * 62.25288 * 7 6 5 42 42 H 0.97003 * 120.00422 * 265.07624 * 10 8 7 43 43 H 1.07998 * 120.04010 * 359.95633 * 14 13 11 44 44 H 1.07998 * 119.83849 * 180.02562 * 15 14 13 45 45 H 1.08003 * 119.79897 * 179.97438 * 16 15 14 46 46 H 1.07992 * 119.96701 * 180.02562 * 17 16 15 47 47 H 0.96999 * 120.00495 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.43210 * 65.80546 * 28 4 2 49 49 H 1.09006 * 109.49528 * 305.83454 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1993 5 6 1.4732 -2.0530 1.2815 6 6 2.1150 -2.7918 2.4581 7 6 1.8271 -2.0270 3.7530 8 6 2.3634 -0.5987 3.6229 9 1 3.4447 -0.6269 3.4883 10 7 2.0411 0.1571 4.8358 11 6 2.8546 0.0893 5.9082 12 8 3.8533 -0.6032 5.8708 13 6 2.5304 0.8509 7.1295 14 6 1.3816 1.6439 7.1786 15 6 1.0839 2.3525 8.3226 16 6 1.9194 2.2830 9.4259 17 6 3.0580 1.5036 9.3920 18 6 3.3708 0.7784 8.2502 19 8 4.4856 0.0085 8.2166 20 6 5.3106 0.0794 9.2804 21 1 5.0300 0.6652 10.1433 22 6 6.5197 -0.6000 9.2668 23 7 6.8616 -1.3131 8.2159 24 14 7.6626 -0.5023 10.7412 25 1 7.3412 -1.5986 11.6900 26 1 9.0697 -0.6379 10.2865 27 1 7.4853 0.8069 11.4191 28 6 1.7152 0.0770 2.4124 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6884 -2.5874 0.3562 37 1 0.3945 -2.0026 1.4292 38 1 3.1923 -2.8545 2.3044 39 1 1.6977 -3.7963 2.5283 40 1 2.3188 -2.5261 4.5879 41 1 0.7515 -1.9977 3.9272 42 1 1.2422 0.7064 4.8671 43 1 0.7276 1.7019 6.3211 44 1 0.1951 2.9650 8.3593 45 1 1.6782 2.8422 10.3179 46 1 3.7039 1.4543 10.2561 47 1 7.7073 -1.7880 8.2062 48 1 0.6353 0.1179 2.5544 49 1 2.1064 1.0892 2.3089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362625979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:26 Heat of formation + Delta-G solvation = -31.347855 kcal Electronic energy + Delta-G solvation = -29105.505256 eV Core-core repulsion = 25226.262661 eV Total energy + Delta-G solvation = -3879.242595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.05481 -39.28732 -37.91116 -36.32113 -35.34152 -33.37702 -32.31695 -30.87765 -30.31349 -29.12193 -28.86849 -27.37478 -25.36826 -24.52620 -23.59466 -22.28753 -21.33416 -20.71284 -19.89648 -19.20464 -18.02965 -17.58465 -16.55152 -16.07233 -15.34907 -15.14284 -14.71566 -14.60453 -14.47377 -14.33112 -14.16003 -14.12160 -13.80884 -13.71144 -13.44214 -13.08169 -12.94267 -12.62336 -12.55566 -12.44367 -12.15035 -11.87719 -11.69886 -11.49659 -11.34806 -11.28773 -11.10932 -10.94680 -10.88515 -10.80426 -10.77375 -10.55022 -10.44719 -10.34568 -9.54226 -8.86017 -8.79566 -8.50638 -8.38062 -8.25029 -7.28994 -6.42081 -4.02196 1.74027 2.33563 3.13104 3.14307 3.19007 3.43077 3.78378 3.95250 4.03118 4.62984 4.65277 4.72880 4.88094 4.93341 5.02586 5.08522 5.09757 5.16051 5.20020 5.28284 5.34576 5.42224 5.47313 5.49352 5.54764 5.57966 5.66950 5.71194 5.72888 5.77554 5.82486 5.96511 6.02777 6.04576 6.06511 6.13756 6.19408 6.43897 6.48261 6.58160 6.71676 6.88652 6.93198 6.99135 7.07534 7.12522 7.25911 7.31285 7.71227 7.94403 8.17834 8.97390 9.15708 9.69893 10.71589 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.003079 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.039500 B = 9092.737044 C =10364.394340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.078 3.922 3 C -0.151 4.151 4 N -0.527 5.527 5 C 0.054 3.946 6 C -0.115 4.115 7 C -0.131 4.131 8 C 0.154 3.846 9 H 0.095 0.905 10 N -0.740 5.740 11 C 0.556 3.444 12 O -0.498 6.498 13 C -0.227 4.227 14 C -0.039 4.039 15 C -0.232 4.232 16 C -0.051 4.051 17 C -0.238 4.238 18 C 0.189 3.811 19 O -0.123 6.123 20 C -0.404 4.404 21 H 0.094 0.906 22 C 0.045 3.955 23 N -0.832 5.832 24 Si 0.940 3.060 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.266 1.266 28 C 0.046 3.954 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.389 0.611 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.271 0.729 48 H 0.036 0.964 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.399 3.372 -12.699 18.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.030 4.030 3 C -0.209 4.209 4 N -0.252 5.252 5 C -0.074 4.074 6 C -0.153 4.153 7 C -0.170 4.170 8 C 0.049 3.951 9 H 0.113 0.887 10 N -0.395 5.395 11 C 0.345 3.655 12 O -0.372 6.372 13 C -0.231 4.231 14 C -0.057 4.057 15 C -0.251 4.251 16 C -0.070 4.070 17 C -0.258 4.258 18 C 0.130 3.870 19 O -0.021 6.021 20 C -0.480 4.480 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.463 5.463 24 Si 0.764 3.236 25 H -0.198 1.198 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.082 4.082 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.223 0.777 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.081 0.919 48 H 0.054 0.946 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.770 2.468 -13.014 17.720 hybrid contribution -0.924 0.471 0.922 1.388 sum -12.694 2.938 -12.092 17.776 Atomic orbital electron populations 1.22502 0.97775 1.02092 1.02295 1.21700 0.92529 0.95399 0.93421 1.21967 1.02256 0.94854 1.01786 1.62050 1.59208 1.02236 1.01696 1.22148 0.96747 0.89231 0.99227 1.21550 1.02119 0.98038 0.93607 1.21989 1.00578 0.96175 0.98281 1.20721 1.01458 0.90038 0.82899 0.88696 1.45893 1.28212 1.51281 1.14144 1.18204 0.82915 0.81743 0.82602 1.90950 1.25388 1.39043 1.81789 1.18873 1.00435 1.09571 0.94263 1.20751 0.93996 0.93976 0.97017 1.20451 1.02450 1.07161 0.95005 1.20889 0.93239 0.95696 0.97170 1.21159 1.00754 1.04202 0.99638 1.19275 0.87776 0.88328 0.91659 1.84176 1.26002 1.51133 1.40818 1.21489 0.98939 1.32815 0.94752 0.88915 1.25376 0.96748 0.95679 0.98485 1.70127 1.22076 1.26402 1.27668 0.85740 0.79019 0.79099 0.79722 1.19772 1.20129 1.19085 1.22379 0.98104 0.98215 0.89550 0.92468 0.92149 0.92340 0.89855 0.91541 0.92290 0.92233 0.90870 0.94611 0.90700 0.91418 0.90728 0.92559 0.77705 0.87149 0.87349 0.87235 0.85105 0.91870 0.94583 0.89663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.44 8.47 37.16 0.31 -1.13 16 2 C 0.08 0.69 3.10 -67.72 -0.21 0.48 16 3 C -0.15 -1.28 8.69 37.16 0.32 -0.95 16 4 N -0.53 -5.77 4.71 -226.69 -1.07 -6.83 16 5 C 0.05 0.55 4.77 -3.83 -0.02 0.53 16 6 C -0.11 -1.36 6.09 -26.65 -0.16 -1.52 16 7 C -0.13 -1.87 5.58 -26.61 -0.15 -2.02 16 8 C 0.15 2.32 2.61 -67.85 -0.18 2.15 16 9 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 10 N -0.74 -12.04 5.03 -54.77 -0.28 -12.32 16 11 C 0.56 12.25 7.73 -12.47 -0.10 12.15 16 12 O -0.50 -13.66 14.83 -16.57 -0.25 -13.91 16 13 C -0.23 -4.94 5.89 -104.81 -0.62 -5.56 16 14 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 15 C -0.23 -3.81 10.02 -39.61 -0.40 -4.21 16 16 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 17 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 18 C 0.19 4.73 6.66 -38.60 -0.26 4.47 16 19 O -0.12 -3.66 7.84 -21.06 -0.17 -3.82 16 20 C -0.40 -11.50 9.49 30.90 0.29 -11.21 16 21 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 22 C 0.05 1.26 5.49 -17.52 -0.10 1.17 16 23 N -0.83 -25.20 13.67 55.48 0.76 -24.44 16 24 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 28 C 0.05 0.53 4.14 -3.83 -0.02 0.52 16 29 H 0.06 0.47 6.75 -51.93 -0.35 0.12 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.45 6.48 -51.93 -0.34 0.11 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.52 6.19 -51.93 -0.32 0.19 16 36 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 37 H 0.04 0.35 6.59 -51.93 -0.34 0.00 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.39 5.08 6.63 -40.82 -0.27 4.81 16 43 H 0.11 1.46 6.40 -52.49 -0.34 1.12 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 46 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 47 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.04 0.38 6.81 -51.93 -0.35 0.03 16 49 H 0.09 0.99 5.84 -51.93 -0.30 0.68 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -33.94 382.22 -10.02 -43.96 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -7.36 Total: 8.98 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -2.40 Total: -13.00 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.58 Total: -43.60 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.41 Total: -17.73 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.94 -10.02 -43.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362625979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.611 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds