Wall clock time and date at job start Tue Mar 31 2020 16:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46790 * 2 1 4 4 N 1.46891 * 109.47317 * 119.99992 * 2 1 3 5 5 C 1.46848 * 111.00105 * 56.04695 * 4 2 1 6 6 C 1.53035 * 109.52732 * 174.16055 * 5 4 2 7 7 C 1.53120 * 109.27924 * 59.17505 * 6 5 4 8 8 C 1.53115 * 109.16173 * 302.34889 * 7 6 5 9 9 H 1.09002 * 109.50546 * 297.67119 * 8 7 6 10 10 N 1.46500 * 109.50277 * 177.59130 * 8 7 6 11 11 C 1.34773 * 120.00009 * 85.08228 * 10 8 7 12 12 O 1.21592 * 119.99922 * 359.71872 * 11 10 8 13 13 C 1.47532 * 120.00542 * 179.97438 * 11 10 8 14 14 C 1.39676 * 120.19358 * 359.97438 * 13 11 10 15 15 C 1.37825 * 119.91863 * 179.97438 * 14 13 11 16 16 C 1.38572 * 120.32252 * 0.02562 * 15 14 13 17 17 C 1.38024 * 120.40739 * 359.97438 * 16 15 14 18 18 C 1.38837 * 120.06808 * 359.75045 * 17 16 15 19 19 O 1.35517 * 120.16422 * 180.25258 * 18 17 16 20 20 C 1.34820 * 116.99760 * 354.39420 * 19 18 17 21 21 H 1.07999 * 119.99857 * 5.07217 * 20 19 18 22 22 C 1.38694 * 119.99726 * 185.06195 * 20 19 18 23 23 N 1.31518 * 120.00554 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99573 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46716 * 90.00759 * 24 22 20 26 26 H 1.48496 * 109.46964 * 210.00147 * 24 22 20 27 27 H 1.48496 * 109.47302 * 330.00650 * 24 22 20 28 28 C 1.46845 * 110.99887 * 291.79522 * 4 2 1 29 29 H 1.09002 * 109.46755 * 299.99630 * 1 2 3 30 30 H 1.08995 * 109.47199 * 59.99771 * 1 2 3 31 31 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46755 * 240.00370 * 2 1 3 33 33 H 1.09004 * 109.47103 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47184 * 300.00139 * 3 2 1 35 35 H 1.09001 * 109.47692 * 60.00641 * 3 2 1 36 36 H 1.08999 * 109.46638 * 54.13933 * 5 4 2 37 37 H 1.09002 * 109.45342 * 294.17045 * 5 4 2 38 38 H 1.08998 * 109.50241 * 299.23788 * 6 5 4 39 39 H 1.09000 * 109.50468 * 179.12031 * 6 5 4 40 40 H 1.09001 * 109.52380 * 182.44108 * 7 6 5 41 41 H 1.08998 * 109.52112 * 62.25288 * 7 6 5 42 42 H 0.97003 * 120.00422 * 265.07624 * 10 8 7 43 43 H 1.07998 * 120.04010 * 359.95633 * 14 13 11 44 44 H 1.07998 * 119.83849 * 180.02562 * 15 14 13 45 45 H 1.08003 * 119.79897 * 179.97438 * 16 15 14 46 46 H 1.07992 * 119.96701 * 180.02562 * 17 16 15 47 47 H 0.96999 * 120.00495 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.43210 * 65.80546 * 28 4 2 49 49 H 1.09006 * 109.49528 * 305.83454 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6924 1.1993 5 6 1.4732 -2.0530 1.2815 6 6 2.1150 -2.7918 2.4581 7 6 1.8271 -2.0270 3.7530 8 6 2.3634 -0.5987 3.6229 9 1 3.4447 -0.6269 3.4883 10 7 2.0411 0.1571 4.8358 11 6 2.8546 0.0893 5.9082 12 8 3.8533 -0.6032 5.8708 13 6 2.5304 0.8509 7.1295 14 6 1.3816 1.6439 7.1786 15 6 1.0839 2.3525 8.3226 16 6 1.9194 2.2830 9.4259 17 6 3.0580 1.5036 9.3920 18 6 3.3708 0.7784 8.2502 19 8 4.4856 0.0085 8.2166 20 6 5.3106 0.0794 9.2804 21 1 5.0300 0.6652 10.1433 22 6 6.5197 -0.6000 9.2668 23 7 6.8616 -1.3131 8.2159 24 14 7.6626 -0.5023 10.7412 25 1 7.3412 -1.5986 11.6900 26 1 9.0697 -0.6379 10.2865 27 1 7.4853 0.8069 11.4191 28 6 1.7152 0.0770 2.4124 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6884 -2.5874 0.3562 37 1 0.3945 -2.0026 1.4292 38 1 3.1923 -2.8545 2.3044 39 1 1.6977 -3.7963 2.5283 40 1 2.3188 -2.5261 4.5879 41 1 0.7515 -1.9977 3.9272 42 1 1.2422 0.7064 4.8671 43 1 0.7276 1.7019 6.3211 44 1 0.1951 2.9650 8.3593 45 1 1.6782 2.8422 10.3179 46 1 3.7039 1.4543 10.2561 47 1 7.7073 -1.7880 8.2062 48 1 0.6353 0.1179 2.5544 49 1 2.1064 1.0892 2.3089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362625979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:25 Heat of formation + Delta-G solvation = -55.313180 kcal Electronic energy + Delta-G solvation = -29106.544470 eV Core-core repulsion = 25226.262661 eV Total energy + Delta-G solvation = -3880.281810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45438 -40.65028 -39.50956 -38.02157 -36.55075 -34.68348 -34.31277 -32.35938 -31.18673 -30.57942 -30.31001 -28.05241 -27.36184 -25.48336 -25.02305 -23.65503 -22.85249 -21.76827 -21.40075 -20.25403 -19.84451 -19.17922 -17.93857 -17.53751 -16.70424 -16.30550 -16.11565 -16.05913 -15.93891 -15.61733 -15.49859 -15.35741 -15.25060 -15.05374 -14.68601 -14.40859 -14.21654 -14.20340 -13.65674 -13.62067 -13.54540 -13.00503 -12.85787 -12.70777 -12.62346 -12.52975 -12.44985 -12.32098 -12.12774 -12.07277 -11.88820 -11.77265 -11.57561 -11.40582 -11.39571 -10.83376 -10.57864 -10.06723 -9.77673 -9.18985 -9.03245 -8.44178 -6.15503 0.13197 0.73264 1.31624 1.43402 1.50999 2.11400 2.14629 2.16474 2.88142 3.04153 3.23235 3.47613 3.69655 3.81931 3.95696 3.98489 4.03346 4.08511 4.20472 4.24569 4.27744 4.32422 4.42468 4.51198 4.52734 4.55054 4.64680 4.69158 4.76530 4.84743 4.88310 4.92336 4.97022 5.02060 5.04421 5.07881 5.12207 5.14724 5.25865 5.30240 5.33897 5.42443 5.48721 5.58757 5.62044 5.69932 5.96273 6.14021 6.17571 6.21737 6.72234 6.94864 7.51869 7.81085 8.76264 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.003079 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.039500 B = 9092.737044 C =10364.394340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 C -0.150 4.150 4 N -0.548 5.548 5 C 0.060 3.940 6 C -0.112 4.112 7 C -0.126 4.126 8 C 0.153 3.847 9 H 0.048 0.952 10 N -0.713 5.713 11 C 0.550 3.450 12 O -0.567 6.567 13 C -0.245 4.245 14 C -0.029 4.029 15 C -0.200 4.200 16 C -0.040 4.040 17 C -0.259 4.259 18 C 0.149 3.851 19 O -0.189 6.189 20 C -0.428 4.428 21 H 0.107 0.893 22 C -0.023 4.023 23 N -0.905 5.905 24 Si 1.022 2.978 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.247 1.247 28 C 0.060 3.940 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.028 0.972 41 H 0.078 0.922 42 H 0.410 0.590 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.123 0.877 47 H 0.270 0.730 48 H 0.060 0.940 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.093 6.192 -13.121 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.030 4.030 3 C -0.208 4.208 4 N -0.273 5.273 5 C -0.067 4.067 6 C -0.150 4.150 7 C -0.165 4.165 8 C 0.048 3.952 9 H 0.066 0.934 10 N -0.368 5.368 11 C 0.340 3.660 12 O -0.446 6.446 13 C -0.250 4.250 14 C -0.048 4.048 15 C -0.219 4.219 16 C -0.058 4.058 17 C -0.278 4.278 18 C 0.094 3.906 19 O -0.092 6.092 20 C -0.504 4.504 21 H 0.124 0.876 22 C -0.222 4.222 23 N -0.541 5.541 24 Si 0.840 3.160 25 H -0.186 1.186 26 H -0.198 1.198 27 H -0.171 1.171 28 C -0.068 4.068 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.104 0.896 40 H 0.047 0.953 41 H 0.097 0.903 42 H 0.248 0.752 43 H 0.178 0.822 44 H 0.182 0.818 45 H 0.171 0.829 46 H 0.140 0.860 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.587 5.357 -13.462 22.024 hybrid contribution 0.112 -0.181 0.934 0.958 sum -16.474 5.176 -12.529 21.334 Atomic orbital electron populations 1.22441 0.96269 1.02478 1.02879 1.21766 0.93676 0.95224 0.92315 1.21963 1.01240 0.94968 1.02602 1.62001 1.60406 1.02784 1.02082 1.22121 0.97261 0.88654 0.98677 1.21539 1.01078 0.99096 0.93306 1.21912 1.01122 0.95396 0.98065 1.20777 0.99343 0.91187 0.83925 0.93387 1.45606 1.27643 1.50557 1.13006 1.18524 0.82542 0.80997 0.83945 1.90934 1.28555 1.41999 1.83063 1.19319 1.01800 1.10479 0.93387 1.21303 0.92293 0.91803 0.99359 1.21176 1.02758 1.04799 0.93128 1.21435 0.91159 0.93841 0.99404 1.21302 1.02711 1.05312 0.98457 1.20095 0.87446 0.89055 0.94031 1.84184 1.28356 1.54643 1.41989 1.22035 0.99661 1.33351 0.95329 0.87606 1.26765 0.98425 0.94994 1.01993 1.70329 1.23084 1.29570 1.31097 0.84567 0.76059 0.80028 0.75324 1.18632 1.19757 1.17075 1.22187 0.98825 0.97688 0.88085 0.92619 0.90822 0.92028 0.89306 0.93181 0.90481 0.92383 0.89289 0.92909 0.93093 0.89645 0.95333 0.90308 0.75217 0.82210 0.81767 0.82861 0.85972 0.92079 0.92169 0.89530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.10 8.47 71.98 0.61 -1.49 16 2 C 0.08 1.17 3.10 44.92 0.14 1.31 16 3 C -0.15 -2.23 8.69 71.98 0.63 -1.61 16 4 N -0.55 -11.20 4.71 -871.12 -4.10 -15.30 16 5 C 0.06 1.11 4.77 86.32 0.41 1.52 16 6 C -0.11 -2.69 6.09 30.65 0.19 -2.50 16 7 C -0.13 -3.73 5.58 30.67 0.17 -3.56 16 8 C 0.15 4.77 2.61 45.04 0.12 4.89 16 9 H 0.05 1.97 7.58 -2.39 -0.02 1.95 16 10 N -0.71 -23.25 5.03 -445.45 -2.24 -25.49 16 11 C 0.55 25.58 7.73 86.70 0.67 26.25 16 12 O -0.57 -34.41 14.83 16.89 0.25 -34.16 16 13 C -0.25 -10.80 5.89 -19.98 -0.12 -10.92 16 14 C -0.03 -0.88 9.54 22.52 0.21 -0.67 16 15 C -0.20 -5.33 10.02 22.25 0.22 -5.11 16 16 C -0.04 -1.26 10.03 22.30 0.22 -1.04 16 17 C -0.26 -11.20 9.16 22.36 0.20 -10.99 16 18 C 0.15 7.80 6.66 22.91 0.15 7.95 16 19 O -0.19 -12.26 7.84 0.81 0.01 -12.26 16 20 C -0.43 -26.32 9.49 67.93 0.64 -25.67 16 21 H 0.11 5.83 5.21 -2.91 -0.02 5.82 16 22 C -0.02 -1.37 5.49 84.85 0.47 -0.90 16 23 N -0.91 -60.25 13.67 21.62 0.30 -59.96 16 24 Si 1.02 44.97 29.55 68.60 2.03 47.00 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 27 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 28 C 0.06 1.31 4.14 86.33 0.36 1.67 16 29 H 0.05 0.67 6.75 -2.39 -0.02 0.65 16 30 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.69 6.48 -2.38 -0.02 0.68 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.87 6.19 -2.39 -0.01 0.86 16 36 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 37 H 0.05 0.82 6.59 -2.39 -0.02 0.81 16 38 H 0.05 1.45 8.14 -2.39 -0.02 1.44 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.41 9.54 6.63 -92.71 -0.62 8.92 16 43 H 0.16 3.19 6.40 -2.91 -0.02 3.18 16 44 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 45 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 46 H 0.12 5.37 5.64 -2.91 -0.02 5.36 16 47 H 0.27 16.48 8.31 -92.71 -0.77 15.71 16 48 H 0.06 1.04 6.81 -2.39 -0.02 1.03 16 49 H 0.09 1.87 5.84 -2.38 -0.01 1.86 16 Total: -1.00 -88.97 382.22 1.89 -87.08 By element: Atomic # 1 Polarization: 33.60 SS G_CDS: 0.35 Total: 33.96 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: 5.30 Total: -20.87 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -6.05 Total: -100.75 kcal Atomic # 8 Polarization: -46.68 SS G_CDS: 0.26 Total: -46.42 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -88.97 1.89 -87.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362625979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.770 kcal (2) G-P(sol) polarization free energy of solvation -88.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds