Wall clock time and date at job start Tue Mar 31 2020 16:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47121 * 2 1 4 4 N 1.46890 * 109.47169 * 239.99542 * 2 1 3 5 5 C 1.46843 * 111.00140 * 66.04488 * 4 2 1 6 6 C 1.53041 * 109.52486 * 185.83759 * 5 4 2 7 7 C 1.53115 * 109.27896 * 300.82211 * 6 5 4 8 8 C 1.53114 * 109.16135 * 57.65531 * 7 6 5 9 9 H 1.09000 * 109.50548 * 62.32210 * 8 7 6 10 10 N 1.46504 * 109.50558 * 182.40365 * 8 7 6 11 11 C 1.34772 * 119.99974 * 275.00138 * 10 8 7 12 12 O 1.21596 * 120.00252 * 359.97438 * 11 10 8 13 13 C 1.47540 * 120.00054 * 179.97438 * 11 10 8 14 14 C 1.39657 * 120.19548 * 359.97438 * 13 11 10 15 15 C 1.37829 * 119.91986 * 180.02562 * 14 13 11 16 16 C 1.38577 * 120.32129 * 359.97438 * 15 14 13 17 17 C 1.38019 * 120.40207 * 0.02562 * 16 15 14 18 18 C 1.38839 * 120.07478 * 359.67591 * 17 16 15 19 19 O 1.35514 * 120.16521 * 180.30119 * 18 17 16 20 20 C 1.34814 * 117.00050 * 354.39380 * 19 18 17 21 21 H 1.07995 * 119.99774 * 5.07246 * 20 19 18 22 22 C 1.38692 * 120.00105 * 185.06168 * 20 19 18 23 23 N 1.31527 * 119.99943 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00111 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46822 * 90.00472 * 24 22 20 26 26 H 1.48497 * 109.47176 * 210.00600 * 24 22 20 27 27 H 1.48499 * 109.47214 * 330.00861 * 24 22 20 28 28 C 1.46849 * 111.00182 * 190.25853 * 4 2 1 29 29 H 1.09005 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47302 * 60.00631 * 1 2 3 31 31 H 1.08999 * 109.47305 * 300.00290 * 1 2 3 32 32 H 1.09007 * 109.46693 * 119.99385 * 2 1 3 33 33 H 1.08999 * 109.47268 * 59.99688 * 3 2 1 34 34 H 1.09000 * 109.46901 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46336 * 299.99849 * 3 2 1 36 36 H 1.08992 * 109.46508 * 305.85686 * 5 4 2 37 37 H 1.08999 * 109.45967 * 65.82372 * 5 4 2 38 38 H 1.09000 * 109.50225 * 60.76647 * 6 5 4 39 39 H 1.09002 * 109.50085 * 180.83965 * 6 5 4 40 40 H 1.09000 * 109.52351 * 177.56210 * 7 6 5 41 41 H 1.09004 * 109.52577 * 297.68367 * 7 6 5 42 42 H 0.97005 * 120.00061 * 94.99748 * 10 8 7 43 43 H 1.08003 * 120.04456 * 0.02781 * 14 13 11 44 44 H 1.08000 * 119.83616 * 180.02562 * 15 14 13 45 45 H 1.08001 * 119.79628 * 180.02562 * 16 15 14 46 46 H 1.08000 * 119.96625 * 179.97438 * 17 16 15 47 47 H 0.96998 * 119.99776 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.46191 * 294.17405 * 28 4 2 49 49 H 1.08998 * 109.46383 * 54.14564 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1993 5 6 1.6703 0.0515 -2.4161 6 6 2.0656 -0.7671 -3.6473 7 6 3.5714 -1.0421 -3.6094 8 6 3.9158 -1.7749 -2.3100 9 1 3.4027 -2.7364 -2.2873 10 7 5.3631 -1.9911 -2.2391 11 6 5.9142 -3.0650 -2.8387 12 8 5.2102 -3.8547 -3.4381 13 6 7.3718 -3.2824 -2.7679 14 6 8.1843 -2.3777 -2.0811 15 6 9.5454 -2.5861 -2.0189 16 6 10.1129 -3.6902 -2.6347 17 6 9.3224 -4.5927 -3.3170 18 6 7.9488 -4.4023 -3.3848 19 8 7.1702 -5.2905 -4.0490 20 6 7.8007 -6.2747 -4.7208 21 1 8.8732 -6.3779 -4.6465 22 6 7.0722 -7.1547 -5.5072 23 7 5.7661 -7.0287 -5.5979 24 14 7.9458 -8.5188 -6.4374 25 1 8.0187 -9.7319 -5.5840 26 1 7.1938 -8.8315 -7.6791 27 1 9.3195 -8.0775 -6.7885 28 6 3.4669 -0.9272 -1.1175 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9562 -0.8901 36 1 0.5964 0.2368 -2.4328 37 1 2.2030 1.0024 -2.4259 38 1 1.5228 -1.7123 -3.6455 39 1 1.8197 -0.2081 -4.5502 40 1 3.8501 -1.6615 -4.4619 41 1 4.1153 -0.0984 -3.6517 42 1 5.9248 -1.3613 -1.7607 43 1 7.7468 -1.5159 -1.5991 44 1 10.1724 -1.8859 -1.4871 45 1 11.1803 -3.8454 -2.5803 46 1 9.7722 -5.4506 -3.7946 47 1 5.2566 -7.6440 -6.1481 48 1 3.9912 0.0282 -1.1334 49 1 3.6978 -1.4527 -0.1909 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362625986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:29 Heat of formation + Delta-G solvation = -33.253160 kcal Electronic energy + Delta-G solvation = -28982.238883 eV Core-core repulsion = 25102.913668 eV Total energy + Delta-G solvation = -3879.325215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.02588 -39.27954 -37.92382 -36.32319 -35.37524 -33.21424 -32.31609 -30.93270 -30.61795 -28.94331 -28.71160 -27.44772 -25.37526 -24.50138 -23.46442 -22.54131 -21.45337 -20.54232 -19.89699 -19.21465 -18.02050 -17.53303 -16.48697 -16.14987 -15.39417 -15.12682 -14.70422 -14.62571 -14.48735 -14.27229 -14.13343 -14.09570 -13.88130 -13.69748 -13.48819 -13.13916 -12.80773 -12.64157 -12.48111 -12.37473 -12.20111 -12.01601 -11.69982 -11.50028 -11.41083 -11.33056 -11.10828 -10.91849 -10.87201 -10.77328 -10.71199 -10.61754 -10.45120 -10.36201 -9.54238 -8.86076 -8.79585 -8.51349 -8.38988 -8.25069 -7.28990 -6.42228 -4.02252 1.74070 2.33517 3.13070 3.14161 3.18858 3.41324 3.78294 3.95197 4.04179 4.60630 4.66234 4.73589 4.86736 4.91444 5.04499 5.07919 5.10572 5.15810 5.20268 5.29512 5.33646 5.42309 5.48099 5.52887 5.53085 5.58001 5.65056 5.66708 5.72880 5.76844 5.85217 5.93446 6.01744 6.04597 6.07300 6.13749 6.19398 6.44263 6.48417 6.58138 6.71668 6.88442 6.93195 6.99083 7.07518 7.12154 7.25891 7.31250 7.71228 7.94340 8.17593 8.97277 9.15517 9.69848 10.71459 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.002987 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.479135 B = 9372.868242 C =10855.439154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 C -0.187 4.187 4 N -0.527 5.527 5 C 0.051 3.949 6 C -0.115 4.115 7 C -0.131 4.131 8 C 0.155 3.845 9 H 0.095 0.905 10 N -0.741 5.741 11 C 0.556 3.444 12 O -0.498 6.498 13 C -0.226 4.226 14 C -0.038 4.038 15 C -0.232 4.232 16 C -0.051 4.051 17 C -0.238 4.238 18 C 0.189 3.811 19 O -0.123 6.123 20 C -0.404 4.404 21 H 0.094 0.906 22 C 0.045 3.955 23 N -0.832 5.832 24 Si 0.940 3.060 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.267 1.267 28 C 0.052 3.948 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.389 0.611 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.271 0.729 48 H 0.037 0.963 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 15.748 9.364 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.246 4.246 4 N -0.252 5.252 5 C -0.077 4.077 6 C -0.153 4.153 7 C -0.170 4.170 8 C 0.049 3.951 9 H 0.113 0.887 10 N -0.395 5.395 11 C 0.345 3.655 12 O -0.372 6.372 13 C -0.231 4.231 14 C -0.057 4.057 15 C -0.251 4.251 16 C -0.070 4.070 17 C -0.257 4.257 18 C 0.129 3.871 19 O -0.021 6.021 20 C -0.480 4.480 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.463 5.463 24 Si 0.764 3.236 25 H -0.198 1.198 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.076 4.076 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.223 0.777 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.081 0.919 48 H 0.055 0.945 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.888 14.494 8.706 17.903 hybrid contribution 1.355 0.542 -0.117 1.464 sum -4.533 15.036 8.589 17.900 Atomic orbital electron populations 1.21841 0.94216 1.02597 1.01436 1.21699 0.95916 0.92316 0.93279 1.22493 1.01487 0.98259 1.02350 1.62020 1.13356 1.47809 1.01979 1.22201 1.00680 0.94978 0.89805 1.21553 0.96284 1.00969 0.96523 1.21985 0.95606 1.00271 0.99153 1.20712 0.81398 0.99815 0.93144 0.88669 1.45894 1.07312 1.27923 1.58415 1.18208 0.87877 0.80486 0.78897 1.90951 1.62443 1.43608 1.40161 1.18867 0.92571 0.99085 1.12594 1.20748 0.93574 0.96134 0.95277 1.20453 0.94582 1.01145 1.08896 1.20888 0.98503 0.93323 0.94277 1.21158 0.93416 1.03326 1.07847 1.19280 0.89500 0.88105 0.90186 1.84174 1.32625 1.32472 1.52843 1.21487 0.93145 1.07052 1.26294 0.88915 1.25379 0.95650 0.98481 0.96796 1.70134 1.05371 1.35324 1.35450 0.85738 0.79006 0.79982 0.78839 1.19753 1.20136 1.19094 1.22273 0.87856 0.98470 0.99048 0.91675 0.92597 0.92424 0.89992 0.92151 0.92583 0.92210 0.90553 0.94647 0.90727 0.91451 0.90708 0.92550 0.77684 0.87145 0.87350 0.87234 0.85106 0.91875 0.94514 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.13 37.16 0.34 -0.78 16 2 C 0.08 0.67 2.92 -67.72 -0.20 0.47 16 3 C -0.19 -1.43 8.45 37.16 0.31 -1.12 16 4 N -0.53 -5.74 4.60 -226.70 -1.04 -6.78 16 5 C 0.05 0.52 4.54 -3.83 -0.02 0.50 16 6 C -0.11 -1.37 6.09 -26.65 -0.16 -1.53 16 7 C -0.13 -1.88 5.58 -26.61 -0.15 -2.03 16 8 C 0.15 2.32 2.62 -67.85 -0.18 2.15 16 9 H 0.10 1.76 7.58 -51.93 -0.39 1.36 16 10 N -0.74 -12.03 5.03 -54.77 -0.28 -12.31 16 11 C 0.56 12.24 7.73 -12.47 -0.10 12.15 16 12 O -0.50 -13.66 14.83 -16.57 -0.25 -13.90 16 13 C -0.23 -4.93 5.89 -104.81 -0.62 -5.55 16 14 C -0.04 -0.66 9.53 -39.20 -0.37 -1.03 16 15 C -0.23 -3.81 10.03 -39.61 -0.40 -4.21 16 16 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 17 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 18 C 0.19 4.72 6.66 -38.59 -0.26 4.47 16 19 O -0.12 -3.65 7.84 -21.04 -0.16 -3.82 16 20 C -0.40 -11.50 9.49 30.90 0.29 -11.20 16 21 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 22 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 23 N -0.83 -25.20 13.67 55.48 0.76 -24.44 16 24 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 28 C 0.05 0.60 4.61 -3.83 -0.02 0.58 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.42 6.44 -51.93 -0.33 0.09 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.72 7.98 -51.93 -0.41 0.31 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.45 6.82 -51.93 -0.35 0.10 16 35 H 0.06 0.46 6.46 -51.93 -0.34 0.13 16 36 H 0.08 0.70 6.22 -51.93 -0.32 0.38 16 37 H 0.04 0.35 6.58 -51.93 -0.34 0.00 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.39 5.07 6.63 -40.82 -0.27 4.80 16 43 H 0.11 1.46 6.40 -52.48 -0.34 1.12 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 47 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 48 H 0.04 0.38 6.88 -51.93 -0.36 0.03 16 49 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -33.93 383.04 -9.98 -43.91 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.39 Total: 8.75 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.37 Total: -12.80 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.56 Total: -43.53 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.41 Total: -17.72 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.93 -9.98 -43.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362625986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.653 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds