Wall clock time and date at job start Tue Mar 31 2020 16:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47264 * 2 1 4 4 H 1.08996 * 109.47518 * 54.73480 * 3 2 1 5 5 O 1.42904 * 109.47125 * 294.73916 * 3 2 1 6 6 C 1.42898 * 114.00342 * 150.14354 * 5 3 2 7 7 C 1.50694 * 109.47239 * 174.73985 * 3 2 1 8 8 O 1.21281 * 120.00407 * 119.99694 * 7 3 2 9 9 N 1.34774 * 120.00153 * 299.99656 * 7 3 2 10 10 C 1.46502 * 120.00321 * 180.02562 * 9 7 3 11 11 H 1.08997 * 110.77932 * 36.78646 * 10 9 7 12 12 C 1.54325 * 110.71800 * 273.54390 * 10 9 7 13 13 N 1.47023 * 107.27385 * 219.44406 * 12 10 9 14 14 C 1.36938 * 125.64960 * 178.90584 * 13 12 10 15 15 H 1.07990 * 119.99983 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00005 * 0.02621 * 14 13 12 17 17 N 1.31626 * 120.00011 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47046 * 269.99821 * 18 16 14 20 20 H 1.48496 * 109.46844 * 29.99971 * 18 16 14 21 21 H 1.48501 * 109.46916 * 149.99604 * 18 16 14 22 22 C 1.47428 * 108.70214 * 359.17000 * 13 12 10 23 23 C 1.54693 * 104.94076 * 23.80944 * 22 13 12 24 24 H 1.08999 * 110.81471 * 81.31971 * 23 22 13 25 25 C 1.50696 * 111.13597 * 205.09609 * 23 22 13 26 26 C 1.38235 * 120.00044 * 52.11090 * 25 23 22 27 27 C 1.38241 * 119.99735 * 179.78916 * 26 25 23 28 28 C 1.38237 * 119.99947 * 0.46511 * 27 26 25 29 29 C 1.38233 * 119.99883 * 359.76961 * 28 27 26 30 30 C 1.38230 * 120.00313 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.47201 * 305.21542 * 1 2 3 32 32 H 1.08996 * 109.47130 * 65.20950 * 1 2 3 33 33 H 1.08995 * 109.47525 * 185.21798 * 1 2 3 34 34 H 1.08994 * 109.47312 * 239.99942 * 2 1 3 35 35 H 1.09000 * 109.47385 * 119.99811 * 2 1 3 36 36 H 1.09002 * 109.47005 * 59.50962 * 6 5 3 37 37 H 1.08997 * 109.47049 * 179.51416 * 6 5 3 38 38 H 1.09004 * 109.46874 * 299.51282 * 6 5 3 39 39 H 0.97005 * 119.99726 * 359.97438 * 9 7 3 40 40 H 1.09007 * 109.88251 * 100.02695 * 12 10 9 41 41 H 1.09000 * 109.88627 * 338.86666 * 12 10 9 42 42 H 0.96997 * 119.99782 * 180.02562 * 17 16 14 43 43 H 1.08995 * 110.36496 * 142.74140 * 22 13 12 44 44 H 1.09001 * 110.36240 * 265.06710 * 22 13 12 45 45 H 1.07998 * 120.00239 * 0.02562 * 26 25 23 46 46 H 1.07996 * 119.99745 * 180.25492 * 27 26 25 47 47 H 1.07996 * 119.99902 * 179.78935 * 28 27 26 48 48 H 1.08007 * 120.00009 * 179.97438 * 29 28 27 49 49 H 1.08001 * 120.00560 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9829 0.8390 5 8 1.6672 2.0796 -1.2237 6 6 1.4638 3.4891 -1.1067 7 6 3.5413 1.4445 0.1303 8 8 4.2248 1.9423 -0.7391 9 7 4.1245 0.8930 1.2129 10 6 5.5840 0.8954 1.3398 11 1 6.0050 1.8200 0.9449 12 6 6.1959 -0.3304 0.6295 13 7 7.2962 -0.8196 1.4730 14 6 8.0830 -1.9082 1.2064 15 1 8.8689 -2.1874 1.8924 16 6 7.8703 -2.6529 0.0544 17 7 6.9120 -2.3129 -0.7814 18 14 8.9439 -4.1375 -0.3096 19 1 10.1257 -3.7115 -1.1015 20 1 9.3967 -4.7459 0.9671 21 1 8.1628 -5.1354 -1.0838 22 6 7.4082 0.0523 2.6565 23 6 6.0069 0.6872 2.8182 24 1 5.3276 0.0026 3.3261 25 6 6.0876 2.0036 3.5473 26 6 6.9626 2.9817 3.1131 27 6 7.0334 4.1909 3.7794 28 6 6.2362 4.4182 4.8856 29 6 5.3647 3.4382 5.3227 30 6 5.2908 2.2307 4.6539 31 1 -0.3634 0.5926 0.8396 32 1 -0.3633 0.4309 -0.9329 33 1 -0.3634 -1.0233 0.0935 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.3822 3.9610 -0.7571 37 1 1.1922 3.8990 -2.0795 38 1 0.6619 3.6826 -0.3942 39 1 3.5778 0.4952 1.9085 40 1 6.5796 -0.0390 -0.3483 41 1 5.4410 -1.1086 0.5168 42 1 6.7631 -2.8335 -1.5862 43 1 7.6627 -0.5359 3.5382 44 1 8.1560 0.8271 2.4875 45 1 7.5881 2.8027 2.2511 46 1 7.7141 4.9566 3.4377 47 1 6.2940 5.3616 5.4082 48 1 4.7421 3.6157 6.1872 49 1 4.6102 1.4649 4.9956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479420849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:51 Heat of formation + Delta-G solvation = -32.880419 kcal Electronic energy + Delta-G solvation = -29567.547380 eV Core-core repulsion = 25688.238328 eV Total energy + Delta-G solvation = -3879.309052 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.07569 -39.28522 -37.68270 -36.70925 -34.15325 -33.42838 -32.54657 -30.98229 -30.74294 -28.72945 -27.58233 -26.97648 -25.84521 -24.45181 -22.70837 -22.26157 -21.82310 -20.63498 -19.89234 -19.54817 -17.45990 -17.05784 -16.81145 -16.60850 -15.66907 -15.41611 -14.96185 -14.77377 -14.67674 -14.33289 -14.05516 -13.94306 -13.73323 -13.52943 -13.25560 -12.94703 -12.77531 -12.49869 -12.40882 -12.13122 -12.08589 -11.96986 -11.55211 -11.28621 -11.20474 -11.12618 -11.03365 -10.92714 -10.78931 -10.76968 -10.43295 -10.38657 -10.09170 -9.94383 -9.75897 -9.01278 -8.81606 -8.70156 -8.61525 -8.30439 -6.85411 -5.69524 -3.05581 1.47642 1.51509 2.93353 3.37607 3.41393 3.45880 3.48147 3.84125 3.89278 4.48802 4.77903 4.84969 4.86988 4.94808 4.96864 5.07605 5.20071 5.22824 5.25314 5.27441 5.42564 5.45861 5.49310 5.56910 5.60721 5.67112 5.69562 5.70909 5.74623 5.79359 5.88518 6.07262 6.12921 6.13539 6.20651 6.21971 6.31249 6.53790 6.56310 6.63028 6.70896 6.76351 6.93762 7.03982 7.12631 7.55771 7.57942 7.84199 7.91160 8.24133 8.61388 9.20467 9.80813 10.44730 11.40744 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.007011 B = 0.005129 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3992.628933 B = 5458.035899 C = 8512.855646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.077 3.923 4 H 0.082 0.918 5 O -0.356 6.356 6 C 0.031 3.969 7 C 0.489 3.511 8 O -0.523 6.523 9 N -0.711 5.711 10 C 0.130 3.870 11 H 0.087 0.913 12 C 0.173 3.827 13 N -0.604 5.604 14 C -0.233 4.233 15 H 0.079 0.921 16 C -0.005 4.005 17 N -0.917 5.917 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.281 1.281 21 H -0.291 1.291 22 C 0.147 3.853 23 C -0.075 4.075 24 H 0.086 0.914 25 C -0.057 4.057 26 C -0.111 4.111 27 C -0.118 4.118 28 C -0.133 4.133 29 C -0.122 4.122 30 C -0.119 4.119 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.394 0.606 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.253 0.747 43 H 0.045 0.955 44 H 0.026 0.974 45 H 0.125 0.875 46 H 0.118 0.882 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.848 11.610 9.739 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C 0.015 3.985 4 H 0.099 0.901 5 O -0.273 6.273 6 C -0.066 4.066 7 C 0.274 3.726 8 O -0.398 6.398 9 N -0.364 5.364 10 C 0.025 3.975 11 H 0.105 0.895 12 C 0.048 3.952 13 N -0.330 5.330 14 C -0.361 4.361 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.564 5.564 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.207 1.207 21 H -0.217 1.217 22 C 0.020 3.980 23 C -0.095 4.095 24 H 0.104 0.896 25 C -0.057 4.057 26 C -0.129 4.129 27 C -0.136 4.136 28 C -0.151 4.151 29 C -0.141 4.141 30 C -0.137 4.137 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.228 0.772 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.143 0.857 46 H 0.136 0.864 47 H 0.134 0.866 48 H 0.135 0.865 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.353 11.705 8.717 18.490 hybrid contribution 0.377 -0.753 0.342 0.909 sum -10.976 10.953 9.059 17.958 Atomic orbital electron populations 1.21714 0.94725 1.01821 1.02142 1.21605 0.96850 0.92979 1.04204 1.22116 0.91322 0.96237 0.88810 0.90053 1.87988 1.88257 1.20584 1.30463 1.22816 0.99606 0.81744 1.02402 1.21227 0.90866 0.78536 0.82017 1.90717 1.64868 1.44850 1.39334 1.45940 1.07767 1.60034 1.22641 1.22486 0.79068 1.01733 0.94261 0.89490 1.21514 0.90212 0.90610 0.92893 1.44412 1.37482 1.30709 1.20442 1.19029 1.10267 1.01899 1.04906 0.90288 1.24826 0.98755 0.99444 0.97178 1.69969 1.32693 1.40649 1.13050 0.86128 0.79554 0.82225 0.77889 1.21557 1.20686 1.21682 1.21556 0.91828 0.93114 0.91493 1.21640 1.00507 0.92946 0.94430 0.89556 1.19820 0.95464 0.95360 0.95094 1.21135 0.98494 0.93160 1.00087 1.21122 0.99384 0.97153 0.95987 1.21060 0.97417 0.99138 0.97468 1.21052 0.99182 0.93945 0.99873 1.21027 0.99650 0.97286 0.95778 0.93002 0.91959 0.92273 0.89924 0.90008 0.93618 0.89484 0.94333 0.77229 0.93153 0.92935 0.93639 0.93714 0.95688 0.85727 0.86366 0.86638 0.86538 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.76 37.16 0.36 -1.03 16 2 C -0.12 -1.42 5.59 -26.73 -0.15 -1.57 16 3 C 0.08 1.03 2.52 -27.88 -0.07 0.96 16 4 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16 5 O -0.36 -5.27 9.53 -55.14 -0.53 -5.79 16 6 C 0.03 0.36 10.77 101.05 1.09 1.44 16 7 C 0.49 8.48 7.18 -10.99 -0.08 8.40 16 8 O -0.52 -11.55 16.20 -14.35 -0.23 -11.78 16 9 N -0.71 -11.37 4.99 -52.03 -0.26 -11.63 16 10 C 0.13 2.45 2.65 -66.09 -0.18 2.28 16 11 H 0.09 1.79 6.78 -51.93 -0.35 1.43 16 12 C 0.17 4.25 5.12 -3.06 -0.02 4.24 16 13 N -0.60 -15.19 3.40 -170.21 -0.58 -15.76 16 14 C -0.23 -6.44 10.28 -15.06 -0.15 -6.60 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 17 N -0.92 -27.32 10.31 55.49 0.57 -26.75 16 18 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 C 0.15 2.94 6.64 -2.64 -0.02 2.92 16 23 C -0.08 -1.24 2.85 -89.74 -0.26 -1.50 16 24 H 0.09 1.34 7.83 -51.93 -0.41 0.93 16 25 C -0.06 -0.82 5.00 -104.62 -0.52 -1.35 16 26 C -0.11 -1.61 8.31 -39.58 -0.33 -1.94 16 27 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 28 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 29 C -0.12 -1.37 10.05 -39.59 -0.40 -1.76 16 30 C -0.12 -1.47 9.69 -39.58 -0.38 -1.86 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.63 7.97 -51.93 -0.41 0.22 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 0.87 7.42 -51.93 -0.39 0.49 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 39 H 0.39 5.01 7.88 -40.82 -0.32 4.69 16 40 H 0.05 1.46 7.51 -51.92 -0.39 1.07 16 41 H 0.05 1.41 7.27 -51.93 -0.38 1.04 16 42 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.51 6.63 -51.93 -0.34 0.16 16 45 H 0.12 1.91 7.02 -52.49 -0.37 1.55 16 46 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 49 H 0.12 1.25 7.99 -52.49 -0.42 0.83 16 LS Contribution 396.62 15.07 5.98 5.98 Total: -1.00 -34.14 396.62 -10.02 -44.15 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -7.95 Total: 5.80 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.99 Total: -1.38 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.27 Total: -54.15 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.76 Total: -17.57 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.14 -10.02 -44.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479420849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.274 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds