Wall clock time and date at job start Tue Mar 31 2020 16:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47264 * 2 1 4 4 H 1.08996 * 109.47518 * 54.73480 * 3 2 1 5 5 O 1.42904 * 109.47125 * 294.73916 * 3 2 1 6 6 C 1.42898 * 114.00342 * 150.14354 * 5 3 2 7 7 C 1.50694 * 109.47239 * 174.73985 * 3 2 1 8 8 O 1.21281 * 120.00407 * 119.99694 * 7 3 2 9 9 N 1.34774 * 120.00153 * 299.99656 * 7 3 2 10 10 C 1.46502 * 120.00321 * 180.02562 * 9 7 3 11 11 H 1.08997 * 110.77932 * 36.78646 * 10 9 7 12 12 C 1.54325 * 110.71800 * 273.54390 * 10 9 7 13 13 N 1.47023 * 107.27385 * 219.44406 * 12 10 9 14 14 C 1.36938 * 125.64960 * 178.90584 * 13 12 10 15 15 H 1.07990 * 119.99983 * 180.02562 * 14 13 12 16 16 C 1.38811 * 120.00005 * 0.02621 * 14 13 12 17 17 N 1.31626 * 120.00011 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47046 * 269.99821 * 18 16 14 20 20 H 1.48496 * 109.46844 * 29.99971 * 18 16 14 21 21 H 1.48501 * 109.46916 * 149.99604 * 18 16 14 22 22 C 1.47428 * 108.70214 * 359.17000 * 13 12 10 23 23 C 1.54693 * 104.94076 * 23.80944 * 22 13 12 24 24 H 1.08999 * 110.81471 * 81.31971 * 23 22 13 25 25 C 1.50696 * 111.13597 * 205.09609 * 23 22 13 26 26 C 1.38235 * 120.00044 * 52.11090 * 25 23 22 27 27 C 1.38241 * 119.99735 * 179.78916 * 26 25 23 28 28 C 1.38237 * 119.99947 * 0.46511 * 27 26 25 29 29 C 1.38233 * 119.99883 * 359.76961 * 28 27 26 30 30 C 1.38230 * 120.00313 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.47201 * 305.21542 * 1 2 3 32 32 H 1.08996 * 109.47130 * 65.20950 * 1 2 3 33 33 H 1.08995 * 109.47525 * 185.21798 * 1 2 3 34 34 H 1.08994 * 109.47312 * 239.99942 * 2 1 3 35 35 H 1.09000 * 109.47385 * 119.99811 * 2 1 3 36 36 H 1.09002 * 109.47005 * 59.50962 * 6 5 3 37 37 H 1.08997 * 109.47049 * 179.51416 * 6 5 3 38 38 H 1.09004 * 109.46874 * 299.51282 * 6 5 3 39 39 H 0.97005 * 119.99726 * 359.97438 * 9 7 3 40 40 H 1.09007 * 109.88251 * 100.02695 * 12 10 9 41 41 H 1.09000 * 109.88627 * 338.86666 * 12 10 9 42 42 H 0.96997 * 119.99782 * 180.02562 * 17 16 14 43 43 H 1.08995 * 110.36496 * 142.74140 * 22 13 12 44 44 H 1.09001 * 110.36240 * 265.06710 * 22 13 12 45 45 H 1.07998 * 120.00239 * 0.02562 * 26 25 23 46 46 H 1.07996 * 119.99745 * 180.25492 * 27 26 25 47 47 H 1.07996 * 119.99902 * 179.78935 * 28 27 26 48 48 H 1.08007 * 120.00009 * 179.97438 * 29 28 27 49 49 H 1.08001 * 120.00560 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6018 1.9829 0.8390 5 8 1.6672 2.0796 -1.2237 6 6 1.4638 3.4891 -1.1067 7 6 3.5413 1.4445 0.1303 8 8 4.2248 1.9423 -0.7391 9 7 4.1245 0.8930 1.2129 10 6 5.5840 0.8954 1.3398 11 1 6.0050 1.8200 0.9449 12 6 6.1959 -0.3304 0.6295 13 7 7.2962 -0.8196 1.4730 14 6 8.0830 -1.9082 1.2064 15 1 8.8689 -2.1874 1.8924 16 6 7.8703 -2.6529 0.0544 17 7 6.9120 -2.3129 -0.7814 18 14 8.9439 -4.1375 -0.3096 19 1 10.1257 -3.7115 -1.1015 20 1 9.3967 -4.7459 0.9671 21 1 8.1628 -5.1354 -1.0838 22 6 7.4082 0.0523 2.6565 23 6 6.0069 0.6872 2.8182 24 1 5.3276 0.0026 3.3261 25 6 6.0876 2.0036 3.5473 26 6 6.9626 2.9817 3.1131 27 6 7.0334 4.1909 3.7794 28 6 6.2362 4.4182 4.8856 29 6 5.3647 3.4382 5.3227 30 6 5.2908 2.2307 4.6539 31 1 -0.3634 0.5926 0.8396 32 1 -0.3633 0.4309 -0.9329 33 1 -0.3634 -1.0233 0.0935 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 2.3822 3.9610 -0.7571 37 1 1.1922 3.8990 -2.0795 38 1 0.6619 3.6826 -0.3942 39 1 3.5778 0.4952 1.9085 40 1 6.5796 -0.0390 -0.3483 41 1 5.4410 -1.1086 0.5168 42 1 6.7631 -2.8335 -1.5862 43 1 7.6627 -0.5359 3.5382 44 1 8.1560 0.8271 2.4875 45 1 7.5881 2.8027 2.2511 46 1 7.7141 4.9566 3.4377 47 1 6.2940 5.3616 5.4082 48 1 4.7421 3.6157 6.1872 49 1 4.6102 1.4649 4.9956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479420849.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:51 Heat of formation + Delta-G solvation = -54.476242 kcal Electronic energy + Delta-G solvation = -29568.483845 eV Core-core repulsion = 25688.238328 eV Total energy + Delta-G solvation = -3880.245517 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.44736 -40.43737 -38.94921 -38.14560 -35.71184 -34.77895 -33.92165 -32.58378 -31.73209 -30.24264 -28.87325 -28.38789 -27.06632 -26.17171 -23.84856 -23.32294 -22.95364 -22.26702 -21.36563 -20.93695 -19.00062 -18.61296 -18.10075 -17.75257 -17.01365 -16.84540 -16.38574 -16.00829 -15.95998 -15.55788 -15.47295 -15.22864 -14.99121 -14.75023 -14.36183 -14.22488 -14.09788 -13.91904 -13.81382 -13.61282 -13.39215 -13.04642 -12.99717 -12.77135 -12.66625 -12.55635 -12.44343 -12.12562 -12.04303 -11.99948 -11.89083 -11.74135 -11.66204 -11.58331 -11.51954 -10.78079 -10.30732 -10.12894 -9.75088 -9.50209 -8.95976 -7.86239 -5.25296 0.48459 0.56769 1.43576 1.46363 1.55132 1.55874 2.07051 2.47409 2.80458 2.89793 3.31726 3.47667 3.65627 3.77773 3.87870 3.91024 3.94528 3.96124 4.21552 4.23851 4.27575 4.34688 4.35366 4.44013 4.51658 4.52852 4.57272 4.59820 4.71362 4.80928 4.81707 4.86552 4.90545 5.10559 5.13759 5.17822 5.19650 5.22372 5.28706 5.42039 5.43141 5.57268 5.64076 5.68109 5.71243 5.82984 6.03984 6.12750 6.18718 6.58103 7.03495 7.27237 7.71913 8.35365 9.22475 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.007011 B = 0.005129 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3992.628933 B = 5458.035899 C = 8512.855646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.118 4.118 3 C 0.085 3.915 4 H 0.125 0.875 5 O -0.383 6.383 6 C 0.026 3.974 7 C 0.481 3.519 8 O -0.580 6.580 9 N -0.697 5.697 10 C 0.147 3.853 11 H 0.066 0.934 12 C 0.191 3.809 13 N -0.623 5.623 14 C -0.243 4.243 15 H 0.089 0.911 16 C -0.066 4.066 17 N -0.952 5.952 18 Si 0.980 3.020 19 H -0.290 1.290 20 H -0.262 1.262 21 H -0.295 1.295 22 C 0.141 3.859 23 C -0.049 4.049 24 H 0.106 0.894 25 C -0.075 4.075 26 C -0.133 4.133 27 C -0.127 4.127 28 C -0.127 4.127 29 C -0.118 4.118 30 C -0.116 4.116 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.027 0.973 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.414 0.586 40 H -0.012 1.012 41 H 0.022 0.978 42 H 0.244 0.756 43 H 0.056 0.944 44 H 0.023 0.977 45 H 0.099 0.901 46 H 0.131 0.869 47 H 0.146 0.854 48 H 0.151 0.849 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.858 12.605 13.622 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.024 3.976 4 H 0.142 0.858 5 O -0.300 6.300 6 C -0.070 4.070 7 C 0.268 3.732 8 O -0.459 6.459 9 N -0.350 5.350 10 C 0.041 3.959 11 H 0.084 0.916 12 C 0.065 3.935 13 N -0.350 5.350 14 C -0.372 4.372 15 H 0.107 0.893 16 C -0.259 4.259 17 N -0.601 5.601 18 Si 0.808 3.192 19 H -0.217 1.217 20 H -0.186 1.186 21 H -0.222 1.222 22 C 0.016 3.984 23 C -0.069 4.069 24 H 0.124 0.876 25 C -0.076 4.076 26 C -0.151 4.151 27 C -0.145 4.145 28 C -0.145 4.145 29 C -0.136 4.136 30 C -0.133 4.133 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.046 0.954 37 H 0.116 0.884 38 H 0.092 0.908 39 H 0.252 0.748 40 H 0.006 0.994 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.117 0.883 46 H 0.149 0.851 47 H 0.163 0.837 48 H 0.169 0.831 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.380 12.710 12.675 22.388 hybrid contribution 1.060 -0.942 -0.832 1.644 sum -12.320 11.768 11.843 20.749 Atomic orbital electron populations 1.21668 0.92203 1.02927 1.02809 1.21651 0.98954 0.91764 1.03237 1.22255 0.87831 0.97589 0.89935 0.85769 1.87968 1.88010 1.22346 1.31672 1.23006 0.99881 0.80033 1.04110 1.22248 0.92859 0.77066 0.81011 1.90690 1.66588 1.47361 1.41285 1.45763 1.06530 1.59601 1.23113 1.21952 0.80627 0.97748 0.95593 0.91634 1.21093 0.89430 0.91811 0.91171 1.44688 1.37271 1.30808 1.22231 1.19497 1.10491 1.02264 1.04929 0.89322 1.25719 1.00337 1.02632 0.97240 1.70240 1.34710 1.41805 1.13298 0.85055 0.77442 0.78579 0.78125 1.21675 1.18605 1.22157 1.21747 0.94356 0.92504 0.89841 1.21394 0.98089 0.94664 0.92708 0.87608 1.19603 0.97347 0.94056 0.96550 1.21102 0.99157 0.94713 1.00161 1.21332 1.00145 0.96559 0.96495 1.21467 0.96138 1.00403 0.96451 1.21466 0.98859 0.92960 1.00302 1.21282 0.99010 0.98544 0.94500 0.90437 0.92781 0.91341 0.93394 0.88601 0.95432 0.88436 0.90818 0.74842 0.99405 0.95937 0.94630 0.92550 0.95899 0.88264 0.85074 0.83668 0.83133 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.76 71.98 0.70 -1.60 16 2 C -0.12 -2.73 5.59 30.59 0.17 -2.56 16 3 C 0.09 2.19 2.52 29.85 0.08 2.26 16 4 H 0.12 2.14 7.79 -2.39 -0.02 2.12 16 5 O -0.38 -11.22 9.53 -129.94 -1.24 -12.46 16 6 C 0.03 0.56 10.77 113.37 1.22 1.78 16 7 C 0.48 17.20 7.18 87.66 0.63 17.82 16 8 O -0.58 -27.43 16.20 16.00 0.26 -27.17 16 9 N -0.70 -22.57 4.99 -436.91 -2.18 -24.75 16 10 C 0.15 5.86 2.65 46.18 0.12 5.98 16 11 H 0.07 2.92 6.78 -2.39 -0.02 2.90 16 12 C 0.19 10.11 5.12 86.73 0.44 10.56 16 13 N -0.62 -32.82 3.40 -692.41 -2.35 -35.17 16 14 C -0.24 -13.88 10.28 84.03 0.86 -13.02 16 15 H 0.09 4.76 7.83 -2.92 -0.02 4.74 16 16 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 17 N -0.95 -60.28 10.31 21.65 0.22 -60.06 16 18 Si 0.98 46.99 29.55 68.60 2.03 49.02 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 20 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 21 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 22 C 0.14 5.75 6.64 86.78 0.58 6.33 16 23 C -0.05 -1.60 2.85 -10.22 -0.03 -1.63 16 24 H 0.11 3.05 7.83 -2.39 -0.02 3.03 16 25 C -0.08 -2.07 5.00 -19.87 -0.10 -2.17 16 26 C -0.13 -3.87 8.31 22.27 0.19 -3.68 16 27 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 28 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 29 C -0.12 -2.07 10.05 22.27 0.22 -1.84 16 30 C -0.12 -2.41 9.69 22.27 0.22 -2.20 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 1.00 7.97 -2.39 -0.02 0.98 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 1.90 7.42 -2.39 -0.02 1.88 16 36 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 39 H 0.41 9.90 7.88 -92.70 -0.73 9.17 16 40 H -0.01 -0.79 7.51 -2.38 -0.02 -0.81 16 41 H 0.02 1.30 7.27 -2.39 -0.02 1.28 16 42 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.02 0.96 6.63 -2.39 -0.02 0.95 16 45 H 0.10 3.29 7.02 -2.91 -0.02 3.27 16 46 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 47 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 48 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 49 H 0.14 2.27 7.99 -2.91 -0.02 2.24 16 Total: -1.00 -82.33 396.62 3.16 -79.17 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.21 Total: 23.70 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 6.21 Total: 7.73 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -4.31 Total: -119.98 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.98 Total: -39.63 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -82.33 3.16 -79.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479420849.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.696 kcal (2) G-P(sol) polarization free energy of solvation -82.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds