Wall clock time and date at job start Tue Mar 31 2020 16:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46814 * 2 1 4 4 N 1.46505 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.36931 * 120.00141 * 270.32131 * 4 3 2 6 6 H 1.08000 * 120.00123 * 326.14524 * 5 4 3 7 7 C 1.38817 * 119.99779 * 146.14216 * 5 4 3 8 8 N 1.31622 * 120.00092 * 336.90753 * 7 5 4 9 9 Si 1.86806 * 119.99682 * 156.90658 * 7 5 4 10 10 H 1.48497 * 109.47018 * 60.00080 * 9 7 5 11 11 H 1.48502 * 109.46502 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47087 * 299.99984 * 9 7 5 13 13 C 1.46505 * 119.99672 * 90.32133 * 4 3 2 14 14 C 1.53000 * 109.46904 * 89.99863 * 13 4 3 15 15 N 1.46495 * 109.46886 * 179.97438 * 14 13 4 16 16 C 1.34779 * 119.99927 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99876 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99897 * 180.02562 * 16 15 14 19 19 H 1.09002 * 109.68087 * 55.50823 * 18 16 15 20 20 C 1.53405 * 109.67812 * 294.99298 * 18 16 15 21 21 C 1.53070 * 108.29992 * 175.57804 * 20 18 16 22 22 C 1.50775 * 109.66493 * 48.28858 * 21 20 18 23 23 C 1.38510 * 118.75644 * 162.37804 * 22 21 20 24 24 C 1.38106 * 120.30846 * 179.91525 * 23 22 21 25 25 C 1.38285 * 119.98577 * 359.43078 * 24 23 22 26 26 C 1.37975 * 119.95901 * 0.37165 * 25 24 23 27 27 C 1.38369 * 121.40392 * 341.90597 * 22 21 20 28 28 O 1.35835 * 121.79747 * 0.81132 * 27 22 21 29 29 H 1.09000 * 109.47332 * 299.99637 * 1 2 3 30 30 H 1.08998 * 109.47067 * 59.99981 * 1 2 3 31 31 H 1.09004 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47298 * 240.00077 * 2 1 3 33 33 H 1.08998 * 109.47067 * 120.00019 * 2 1 3 34 34 H 1.09000 * 109.46875 * 60.00083 * 3 2 1 35 35 H 1.08998 * 109.47319 * 299.99864 * 3 2 1 36 36 H 0.96999 * 119.99586 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47157 * 330.00439 * 13 4 3 38 38 H 1.08991 * 109.46911 * 210.00183 * 13 4 3 39 39 H 1.09000 * 109.47120 * 59.99947 * 14 13 4 40 40 H 1.09005 * 109.47088 * 300.00106 * 14 13 4 41 41 H 0.97002 * 120.00090 * 0.02562 * 15 14 13 42 42 H 1.09001 * 109.69469 * 55.88183 * 20 18 16 43 43 H 1.08999 * 109.70444 * 295.28350 * 20 18 16 44 44 H 1.09002 * 109.44392 * 288.23338 * 21 20 18 45 45 H 1.08996 * 109.44206 * 168.34856 * 21 20 18 46 46 H 1.07999 * 119.84804 * 359.66105 * 23 22 21 47 47 H 1.08003 * 120.00731 * 179.70563 * 24 23 22 48 48 H 1.08002 * 120.02170 * 180.39024 * 25 24 23 49 49 H 1.07994 * 119.89027 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.4361 1.1867 6 1 3.7862 1.9525 2.0454 7 6 5.4008 0.7658 1.2854 8 7 5.6828 -0.2105 0.4490 9 14 6.6309 1.2495 2.6055 10 1 6.0140 1.0747 3.9449 11 1 7.8358 0.3881 2.4986 12 1 7.0209 2.6705 2.4218 13 6 4.2380 1.4495 -1.2679 14 6 4.4930 2.8944 -1.7015 15 7 5.2265 2.9014 -2.9696 16 6 5.5642 4.0718 -3.5464 17 8 5.2603 5.1192 -3.0158 18 6 6.3182 4.0789 -4.8512 19 1 5.7692 3.5022 -5.5956 20 6 7.7099 3.4669 -4.6469 21 6 8.4048 3.3877 -6.0085 22 6 8.2781 4.7107 -6.7204 23 6 9.1289 4.9819 -7.7792 24 6 9.0397 6.1829 -8.4552 25 6 8.0897 7.1164 -8.0831 26 6 7.2368 6.8501 -7.0318 27 6 7.3291 5.6444 -6.3433 28 8 6.4792 5.4228 -5.3071 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 6.5296 -0.6786 0.5178 37 1 3.6491 0.9399 -2.0306 38 1 5.1903 0.9350 -1.1400 39 1 5.0818 3.4041 -0.9389 40 1 3.5406 3.4089 -1.8294 41 1 5.4692 2.0636 -3.3942 42 1 7.6130 2.4664 -4.2252 43 1 8.2924 4.0952 -3.9731 44 1 7.9384 2.6066 -6.6090 45 1 9.4593 3.1528 -5.8645 46 1 9.8683 4.2524 -8.0750 47 1 9.7088 6.3912 -9.2770 48 1 8.0152 8.0532 -8.6154 49 1 6.4950 7.5798 -6.7425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481149564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:05 Heat of formation + Delta-G solvation = -41.730528 kcal Electronic energy + Delta-G solvation = -28250.368295 eV Core-core repulsion = 24370.675474 eV Total energy + Delta-G solvation = -3879.692822 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.05179 -39.22007 -37.43691 -36.43536 -34.71804 -34.17800 -32.85313 -31.31419 -30.66713 -30.37769 -28.33322 -26.30106 -25.58215 -24.02421 -23.25298 -22.67072 -21.45533 -20.83221 -20.02827 -19.74358 -18.06944 -17.49194 -16.82670 -16.51619 -15.57398 -15.40051 -15.19241 -14.93447 -14.71423 -14.51334 -14.30489 -14.20876 -13.85358 -13.74380 -13.45014 -13.32148 -12.97386 -12.75501 -12.69523 -12.51525 -12.03078 -11.95892 -11.71042 -11.45443 -11.30434 -11.16104 -11.04401 -10.91351 -10.78553 -10.67038 -10.52351 -10.30091 -10.00112 -9.98656 -9.71489 -9.49534 -9.00739 -8.65903 -8.53686 -8.32929 -6.72288 -5.87736 -3.40979 1.09687 1.22986 2.65192 2.76841 3.34319 3.39733 3.44533 3.51410 3.76104 4.32996 4.42371 4.48511 4.50438 4.64701 4.79748 4.86219 4.98570 5.06020 5.23579 5.24253 5.30151 5.34207 5.43759 5.56262 5.66549 5.72699 5.77110 5.80484 5.85824 6.04776 6.08734 6.11186 6.14503 6.24547 6.26015 6.31221 6.47128 6.49630 6.56737 6.60102 6.66431 6.77309 6.97532 7.02506 7.22030 7.27869 7.53438 7.75759 7.79835 8.40630 8.45475 9.09218 9.72860 10.28180 11.12804 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.002538 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.068496 B =11031.803293 C =12032.270604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.257 4.257 6 H 0.064 0.936 7 C 0.010 3.990 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.133 3.867 14 C 0.100 3.900 15 N -0.713 5.713 16 C 0.515 3.485 17 O -0.523 6.523 18 C 0.076 3.924 19 H 0.097 0.903 20 C -0.151 4.151 21 C -0.076 4.076 22 C -0.163 4.163 23 C -0.085 4.085 24 C -0.156 4.156 25 C -0.089 4.089 26 C -0.147 4.147 27 C 0.136 3.864 28 O -0.288 6.288 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.044 0.956 35 H 0.034 0.966 36 H 0.255 0.745 37 H 0.028 0.972 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.398 0.602 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.127 0.873 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.233 5.499 -17.675 18.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.387 4.387 6 H 0.082 0.918 7 C -0.190 4.190 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.208 1.208 13 C 0.005 3.995 14 C -0.025 4.025 15 N -0.365 5.365 16 C 0.298 3.702 17 O -0.398 6.398 18 C 0.016 3.984 19 H 0.114 0.886 20 C -0.189 4.189 21 C -0.113 4.113 22 C -0.164 4.164 23 C -0.103 4.103 24 C -0.174 4.174 25 C -0.107 4.107 26 C -0.166 4.166 27 C 0.091 3.909 28 O -0.201 6.201 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.069 0.931 41 H 0.232 0.768 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.145 0.855 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.006 6.279 -17.124 18.674 hybrid contribution 0.925 -0.417 0.381 1.083 sum 4.931 5.862 -16.743 18.412 Atomic orbital electron populations 1.21761 0.97752 1.00333 1.00734 1.22069 0.93062 1.00731 1.02070 1.20981 0.84963 0.93558 0.98415 1.43698 0.99509 1.84794 1.01949 1.19064 1.02821 1.26538 0.90275 0.91840 1.25061 1.00607 0.95128 0.98196 1.69957 1.23627 1.19999 1.39447 0.86471 0.80911 0.78295 0.81806 1.20683 1.21607 1.20830 1.21108 1.00835 0.90801 0.86708 1.22420 0.94765 1.02874 0.82410 1.45968 1.57964 1.07241 1.25370 1.19848 0.80173 0.84794 0.85394 1.90732 1.53676 1.31496 1.63939 1.22300 0.97181 0.83016 0.95932 0.88588 1.22233 0.94776 1.03322 0.98548 1.20501 1.02166 0.94008 0.94601 1.19880 0.98569 0.97757 1.00204 1.20889 0.97949 0.97028 0.94399 1.21007 1.00324 0.94549 1.01554 1.20924 0.94578 0.99236 0.95944 1.20637 1.02436 0.96630 0.96861 1.18797 0.89666 0.94588 0.87882 1.86085 1.60170 1.27380 1.46428 0.93378 0.93666 0.93869 0.93104 0.91846 0.93809 0.94790 0.93509 0.95330 0.87646 0.91483 0.93090 0.76840 0.88611 0.89624 0.90007 0.89472 0.85830 0.85971 0.85462 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.86 16 2 C -0.14 -2.64 6.26 -26.73 -0.17 -2.81 16 3 C 0.15 2.98 5.67 -4.04 -0.02 2.96 16 4 N -0.58 -13.64 2.45 -173.23 -0.42 -14.07 16 5 C -0.26 -6.74 9.48 -15.06 -0.14 -6.88 16 6 H 0.06 1.68 7.93 -52.49 -0.42 1.26 16 7 C 0.01 0.26 4.95 -17.43 -0.09 0.17 16 8 N -0.89 -23.90 11.31 55.49 0.63 -23.27 16 9 Si 0.90 21.07 29.61 -169.99 -5.03 16.03 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.13 2.84 5.41 -4.04 -0.02 2.82 16 14 C 0.10 1.98 6.00 -4.04 -0.02 1.96 16 15 N -0.71 -11.41 5.49 -60.30 -0.33 -11.74 16 16 C 0.51 8.71 7.19 -10.99 -0.08 8.63 16 17 O -0.52 -11.31 16.52 -14.20 -0.23 -11.55 16 18 C 0.08 1.00 3.21 -27.67 -0.09 0.91 16 19 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 20 C -0.15 -1.64 5.46 -26.49 -0.14 -1.79 16 21 C -0.08 -0.68 5.86 -27.81 -0.16 -0.85 16 22 C -0.16 -1.78 5.75 -104.44 -0.60 -2.38 16 23 C -0.08 -0.78 9.67 -39.53 -0.38 -1.16 16 24 C -0.16 -1.35 10.04 -39.61 -0.40 -1.75 16 25 C -0.09 -0.82 10.04 -39.66 -0.40 -1.22 16 26 C -0.15 -1.69 9.94 -39.34 -0.39 -2.09 16 27 C 0.14 1.77 6.47 -39.20 -0.25 1.52 16 28 O -0.29 -4.41 9.47 -38.98 -0.37 -4.78 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 36 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.11 2.52 5.31 -51.93 -0.28 2.24 16 39 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.40 5.14 8.23 -40.82 -0.34 4.80 16 42 H 0.10 0.89 7.85 -51.93 -0.41 0.48 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 48 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 49 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 LS Contribution 401.08 15.07 6.04 6.04 Total: -1.00 -31.46 401.08 -10.88 -42.34 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -8.17 Total: 4.78 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -3.00 Total: -3.80 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.13 Total: -49.08 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.60 Total: -16.32 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.46 -10.88 -42.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481149564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.610 kcal (2) G-P(sol) polarization free energy of solvation -31.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds