Wall clock time and date at job start Tue Mar 31 2020 16:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46814 * 2 1 4 4 N 1.46505 * 109.46947 * 179.97438 * 3 2 1 5 5 C 1.36931 * 120.00141 * 270.32131 * 4 3 2 6 6 H 1.08000 * 120.00123 * 326.14524 * 5 4 3 7 7 C 1.38817 * 119.99779 * 146.14216 * 5 4 3 8 8 N 1.31622 * 120.00092 * 336.90753 * 7 5 4 9 9 Si 1.86806 * 119.99682 * 156.90658 * 7 5 4 10 10 H 1.48497 * 109.47018 * 60.00080 * 9 7 5 11 11 H 1.48502 * 109.46502 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47087 * 299.99984 * 9 7 5 13 13 C 1.46505 * 119.99672 * 90.32133 * 4 3 2 14 14 C 1.53000 * 109.46904 * 89.99863 * 13 4 3 15 15 N 1.46495 * 109.46886 * 179.97438 * 14 13 4 16 16 C 1.34779 * 119.99927 * 180.02562 * 15 14 13 17 17 O 1.21281 * 119.99876 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99897 * 180.02562 * 16 15 14 19 19 H 1.09002 * 109.68087 * 55.50823 * 18 16 15 20 20 C 1.53405 * 109.67812 * 294.99298 * 18 16 15 21 21 C 1.53070 * 108.29992 * 175.57804 * 20 18 16 22 22 C 1.50775 * 109.66493 * 48.28858 * 21 20 18 23 23 C 1.38510 * 118.75644 * 162.37804 * 22 21 20 24 24 C 1.38106 * 120.30846 * 179.91525 * 23 22 21 25 25 C 1.38285 * 119.98577 * 359.43078 * 24 23 22 26 26 C 1.37975 * 119.95901 * 0.37165 * 25 24 23 27 27 C 1.38369 * 121.40392 * 341.90597 * 22 21 20 28 28 O 1.35835 * 121.79747 * 0.81132 * 27 22 21 29 29 H 1.09000 * 109.47332 * 299.99637 * 1 2 3 30 30 H 1.08998 * 109.47067 * 59.99981 * 1 2 3 31 31 H 1.09004 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47298 * 240.00077 * 2 1 3 33 33 H 1.08998 * 109.47067 * 120.00019 * 2 1 3 34 34 H 1.09000 * 109.46875 * 60.00083 * 3 2 1 35 35 H 1.08998 * 109.47319 * 299.99864 * 3 2 1 36 36 H 0.96999 * 119.99586 * 179.97438 * 8 7 5 37 37 H 1.09002 * 109.47157 * 330.00439 * 13 4 3 38 38 H 1.08991 * 109.46911 * 210.00183 * 13 4 3 39 39 H 1.09000 * 109.47120 * 59.99947 * 14 13 4 40 40 H 1.09005 * 109.47088 * 300.00106 * 14 13 4 41 41 H 0.97002 * 120.00090 * 0.02562 * 15 14 13 42 42 H 1.09001 * 109.69469 * 55.88183 * 20 18 16 43 43 H 1.08999 * 109.70444 * 295.28350 * 20 18 16 44 44 H 1.09002 * 109.44392 * 288.23338 * 21 20 18 45 45 H 1.08996 * 109.44206 * 168.34856 * 21 20 18 46 46 H 1.07999 * 119.84804 * 359.66105 * 23 22 21 47 47 H 1.08003 * 120.00731 * 179.70563 * 24 23 22 48 48 H 1.08002 * 120.02170 * 180.39024 * 25 24 23 49 49 H 1.07994 * 119.89027 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1892 1.4361 1.1867 6 1 3.7862 1.9525 2.0454 7 6 5.4008 0.7658 1.2854 8 7 5.6828 -0.2105 0.4490 9 14 6.6309 1.2495 2.6055 10 1 6.0140 1.0747 3.9449 11 1 7.8358 0.3881 2.4986 12 1 7.0209 2.6705 2.4218 13 6 4.2380 1.4495 -1.2679 14 6 4.4930 2.8944 -1.7015 15 7 5.2265 2.9014 -2.9696 16 6 5.5642 4.0718 -3.5464 17 8 5.2603 5.1192 -3.0158 18 6 6.3182 4.0789 -4.8512 19 1 5.7692 3.5022 -5.5956 20 6 7.7099 3.4669 -4.6469 21 6 8.4048 3.3877 -6.0085 22 6 8.2781 4.7107 -6.7204 23 6 9.1289 4.9819 -7.7792 24 6 9.0397 6.1829 -8.4552 25 6 8.0897 7.1164 -8.0831 26 6 7.2368 6.8501 -7.0318 27 6 7.3291 5.6444 -6.3433 28 8 6.4792 5.4228 -5.3071 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 6.5296 -0.6786 0.5178 37 1 3.6491 0.9399 -2.0306 38 1 5.1903 0.9350 -1.1400 39 1 5.0818 3.4041 -0.9389 40 1 3.5406 3.4089 -1.8294 41 1 5.4692 2.0636 -3.3942 42 1 7.6130 2.4664 -4.2252 43 1 8.2924 4.0952 -3.9731 44 1 7.9384 2.6066 -6.6090 45 1 9.4593 3.1528 -5.8645 46 1 9.8683 4.2524 -8.0750 47 1 9.7088 6.3912 -9.2770 48 1 8.0152 8.0532 -8.6154 49 1 6.4950 7.5798 -6.7425 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481149564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:45:04 Heat of formation + Delta-G solvation = -58.723910 kcal Electronic energy + Delta-G solvation = -28251.105184 eV Core-core repulsion = 24370.675474 eV Total energy + Delta-G solvation = -3880.429710 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.01734 -40.49047 -38.45792 -38.08385 -35.98560 -35.29042 -34.54980 -32.77217 -31.93859 -31.14421 -29.81405 -27.38502 -27.31442 -24.95416 -24.77525 -23.43529 -23.05488 -22.06383 -21.56448 -20.88141 -19.06436 -18.88465 -18.21680 -17.67508 -17.00946 -16.86226 -16.38026 -16.21553 -16.01705 -15.86314 -15.51591 -15.33473 -15.04022 -14.94132 -14.58818 -14.56324 -14.20417 -14.13588 -14.02375 -13.64773 -13.49397 -13.04551 -12.90009 -12.73924 -12.58356 -12.52621 -12.44618 -12.26073 -12.15682 -12.03935 -12.01390 -11.80547 -11.73649 -11.48710 -11.32282 -10.88978 -10.55809 -10.15161 -9.73481 -9.15242 -8.64393 -7.86533 -5.42446 0.36464 0.45157 1.41412 1.43369 1.47905 1.53321 1.54474 2.47784 2.59380 2.81554 3.21578 3.42890 3.46586 3.71765 3.77781 3.80912 3.86439 4.15360 4.22114 4.27358 4.32012 4.35809 4.36924 4.48212 4.54035 4.60238 4.62021 4.68550 4.77301 4.82591 4.85066 4.94128 4.97184 5.00006 5.13003 5.15052 5.22631 5.27284 5.32957 5.35029 5.47218 5.51715 5.59521 5.61594 5.66150 5.80716 5.86244 6.34945 6.43807 6.52626 7.09950 7.15549 7.82992 8.32871 9.10445 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014874 B = 0.002538 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.068496 B =11031.803293 C =12032.270604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.143 3.857 4 N -0.597 5.597 5 C -0.269 4.269 6 H 0.053 0.947 7 C -0.028 4.028 8 N -0.906 5.906 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.142 3.858 14 C 0.120 3.880 15 N -0.699 5.699 16 C 0.513 3.487 17 O -0.577 6.577 18 C 0.082 3.918 19 H 0.126 0.874 20 C -0.147 4.147 21 C -0.071 4.071 22 C -0.171 4.171 23 C -0.087 4.087 24 C -0.152 4.152 25 C -0.090 4.090 26 C -0.169 4.169 27 C 0.101 3.899 28 O -0.323 6.323 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.042 0.958 33 H 0.031 0.969 34 H 0.040 0.960 35 H 0.052 0.948 36 H 0.254 0.746 37 H 0.046 0.954 38 H 0.085 0.915 39 H 0.031 0.969 40 H 0.045 0.955 41 H 0.416 0.584 42 H 0.113 0.887 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.152 0.848 47 H 0.152 0.848 48 H 0.152 0.848 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 4.690 -20.092 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.169 4.169 3 C 0.018 3.982 4 N -0.317 5.317 5 C -0.399 4.399 6 H 0.071 0.929 7 C -0.226 4.226 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.216 1.216 13 C 0.014 3.986 14 C -0.006 4.006 15 N -0.353 5.353 16 C 0.299 3.701 17 O -0.457 6.457 18 C 0.022 3.978 19 H 0.143 0.857 20 C -0.185 4.185 21 C -0.107 4.107 22 C -0.172 4.172 23 C -0.104 4.104 24 C -0.170 4.170 25 C -0.108 4.108 26 C -0.188 4.188 27 C 0.056 3.944 28 O -0.237 6.237 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.253 0.747 42 H 0.131 0.869 43 H 0.081 0.919 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.170 0.830 47 H 0.170 0.830 48 H 0.169 0.831 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.853 5.437 -19.570 20.883 hybrid contribution 0.652 -0.093 1.070 1.257 sum 5.505 5.344 -18.500 20.028 Atomic orbital electron populations 1.21671 0.94348 1.01709 1.01911 1.21901 0.95978 0.98990 1.00060 1.21107 0.83316 0.94670 0.99117 1.43925 1.00922 1.85028 1.01851 1.19191 1.03491 1.26158 0.91046 0.92931 1.25571 1.01702 0.95322 1.00023 1.70040 1.23760 1.20584 1.40570 0.85675 0.79269 0.77382 0.80145 1.20338 1.21279 1.21569 1.20976 0.99896 0.91235 0.86459 1.21914 0.94196 1.01334 0.83139 1.45724 1.57240 1.08214 1.24088 1.20593 0.79324 0.83812 0.86371 1.90700 1.55854 1.33384 1.65722 1.22301 0.98250 0.83251 0.93975 0.85673 1.22244 0.93108 1.03348 0.99788 1.20569 1.03215 0.93751 0.93175 1.20160 0.98171 0.98070 1.00807 1.21270 0.97795 0.97839 0.93530 1.21436 0.99893 0.93945 1.01745 1.21249 0.93966 1.00479 0.95085 1.20833 1.03385 0.96502 0.98046 1.19131 0.90832 0.96051 0.88347 1.86016 1.61462 1.28346 1.47845 0.92725 0.91960 0.92426 0.93951 0.94959 0.94169 0.92927 0.93672 0.93571 0.89734 0.95052 0.93613 0.74687 0.86881 0.91878 0.87653 0.87579 0.82986 0.82995 0.83068 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.16 16 2 C -0.13 -4.84 6.26 30.60 0.19 -4.65 16 3 C 0.14 5.78 5.67 86.38 0.49 6.27 16 4 N -0.60 -28.46 2.45 -701.99 -1.72 -30.18 16 5 C -0.27 -14.35 9.48 84.04 0.80 -13.55 16 6 H 0.05 2.86 7.93 -2.91 -0.02 2.84 16 7 C -0.03 -1.50 4.95 84.86 0.42 -1.08 16 8 N -0.91 -49.24 11.31 21.65 0.24 -48.99 16 9 Si 0.95 43.93 29.61 68.60 2.03 45.96 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 13 C 0.14 6.08 5.41 86.38 0.47 6.55 16 14 C 0.12 4.87 6.00 86.38 0.52 5.39 16 15 N -0.70 -22.41 5.49 -463.06 -2.54 -24.95 16 16 C 0.51 17.74 7.19 87.66 0.63 18.38 16 17 O -0.58 -26.20 16.52 15.86 0.26 -25.94 16 18 C 0.08 2.13 3.21 29.98 0.10 2.23 16 19 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 20 C -0.15 -3.03 5.46 30.75 0.17 -2.86 16 21 C -0.07 -1.08 5.86 29.90 0.18 -0.90 16 22 C -0.17 -3.41 5.75 -19.74 -0.11 -3.52 16 23 C -0.09 -1.31 9.67 22.30 0.22 -1.10 16 24 C -0.15 -2.16 10.04 22.25 0.22 -1.94 16 25 C -0.09 -1.51 10.04 22.22 0.22 -1.29 16 26 C -0.17 -3.93 9.94 22.43 0.22 -3.71 16 27 C 0.10 2.62 6.47 22.52 0.15 2.77 16 28 O -0.32 -10.19 9.47 -72.81 -0.69 -10.88 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 35 H 0.05 1.91 8.07 -2.39 -0.02 1.89 16 36 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 37 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 38 H 0.09 4.08 5.31 -2.39 -0.01 4.07 16 39 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.42 10.29 8.23 -92.71 -0.76 9.52 16 42 H 0.11 1.88 7.85 -2.39 -0.02 1.87 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 47 H 0.15 1.24 8.06 -2.91 -0.02 1.21 16 48 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 49 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -71.38 401.08 3.34 -68.04 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.17 Total: 23.14 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.58 Total: 3.81 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.02 Total: -104.13 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.43 Total: -36.82 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.38 3.34 -68.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481149564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.317 kcal (2) G-P(sol) polarization free energy of solvation -71.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds