Wall clock time and date at job start Tue Mar 31 2020 16:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 N 1.46503 * 109.46954 * 180.02562 * 3 2 1 5 5 C 1.36933 * 119.99497 * 270.32419 * 4 3 2 6 6 H 1.07996 * 120.00681 * 326.14228 * 5 4 3 7 7 C 1.38814 * 119.99835 * 146.15198 * 5 4 3 8 8 N 1.31619 * 119.99746 * 336.89388 * 7 5 4 9 9 Si 1.86801 * 120.00356 * 156.89358 * 7 5 4 10 10 H 1.48497 * 109.46844 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47207 * 120.00037 * 9 7 5 12 12 H 1.48501 * 109.47325 * 240.00071 * 9 7 5 13 13 C 1.46494 * 120.00063 * 90.32508 * 4 3 2 14 14 C 1.53005 * 109.46940 * 89.99879 * 13 4 3 15 15 N 1.46504 * 109.46866 * 180.02562 * 14 13 4 16 16 C 1.34779 * 119.99715 * 179.97438 * 15 14 13 17 17 O 1.21580 * 120.00265 * 359.97438 * 16 15 14 18 18 C 1.47607 * 119.99515 * 179.97438 * 16 15 14 19 19 C 1.39746 * 120.26945 * 0.02562 * 18 16 15 20 20 C 1.37474 * 120.20274 * 179.85123 * 19 18 16 21 21 C 1.39590 * 120.42760 * 0.09351 * 20 19 18 22 22 C 1.39175 * 119.10420 * 0.15709 * 21 20 19 23 23 C 1.37312 * 120.93538 * 359.36181 * 22 21 20 24 24 C 1.51673 * 106.99811 * 179.44439 * 22 21 20 25 25 C 1.54703 * 101.89443 * 344.48353 * 24 22 21 26 26 H 1.09000 * 110.74383 * 143.70502 * 25 24 22 27 27 C 1.53004 * 110.74136 * 267.04230 * 25 24 22 28 28 O 1.35997 * 129.71281 * 180.59884 * 21 20 19 29 29 H 1.09001 * 109.46642 * 299.99630 * 1 2 3 30 30 H 1.08999 * 109.47389 * 59.99937 * 1 2 3 31 31 H 1.09000 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46470 * 239.99866 * 2 1 3 33 33 H 1.08999 * 109.47389 * 120.00062 * 2 1 3 34 34 H 1.09002 * 109.46946 * 60.00089 * 3 2 1 35 35 H 1.08999 * 109.47040 * 300.00277 * 3 2 1 36 36 H 0.97001 * 120.00412 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47271 * 210.00203 * 13 4 3 38 38 H 1.09004 * 109.47420 * 330.00021 * 13 4 3 39 39 H 1.08998 * 109.46896 * 299.99480 * 14 13 4 40 40 H 1.08998 * 109.47138 * 60.00248 * 14 13 4 41 41 H 0.96995 * 120.00083 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.90286 * 359.82422 * 19 18 16 43 43 H 1.07998 * 119.78330 * 180.02562 * 20 19 18 44 44 H 1.08006 * 120.06772 * 180.60801 * 23 22 21 45 45 H 1.08998 * 110.94847 * 226.33253 * 24 22 21 46 46 H 1.09003 * 110.94790 * 102.63028 * 24 22 21 47 47 H 1.08998 * 109.46949 * 174.85574 * 27 25 24 48 48 H 1.09006 * 109.46549 * 294.85195 * 27 25 24 49 49 H 1.09002 * 109.47102 * 54.84879 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.4355 1.1850 6 1 3.7879 1.9516 2.0442 7 6 5.4019 0.7653 1.2826 8 7 5.6832 -0.2108 0.4456 9 14 6.6331 1.2487 2.6016 10 1 6.0808 2.3661 3.4087 11 1 6.8958 0.0837 3.4843 12 1 7.9014 1.6800 1.9607 13 6 4.2370 1.4498 -1.2696 14 6 4.4919 2.8949 -1.7029 15 7 5.2233 2.9023 -2.9723 16 6 5.5595 4.0729 -3.5495 17 8 5.2553 5.1227 -3.0171 18 6 6.2969 4.0802 -4.8281 19 6 6.6489 2.8768 -5.4452 20 6 7.3331 2.8853 -6.6376 21 6 7.6845 4.0932 -7.2425 22 6 7.3358 5.2884 -6.6205 23 6 6.6439 5.2913 -5.4344 24 6 7.8572 6.4123 -7.4955 25 6 8.8522 5.6652 -8.4148 26 1 8.8346 6.0816 -9.4220 27 6 10.2665 5.7106 -7.8327 28 8 8.3429 4.3210 -8.4105 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 6.5297 -0.6794 0.5139 37 1 5.1894 0.9352 -1.1427 38 1 3.6476 0.9404 -2.0320 39 1 3.5394 3.4094 -1.8300 40 1 5.0813 3.4043 -0.9406 41 1 5.4650 2.0647 -3.3976 42 1 6.3830 1.9372 -4.9839 43 1 7.6013 1.9513 -7.1088 44 1 6.3720 6.2271 -4.9688 45 1 8.3696 7.1660 -6.8977 46 1 7.0508 6.8599 -8.0765 47 1 10.9316 5.1031 -8.4464 48 1 10.6220 6.7410 -7.8219 49 1 10.2533 5.3201 -6.8151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481151211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:55 Heat of formation + Delta-G solvation = -33.698210 kcal Electronic energy + Delta-G solvation = -27946.850797 eV Core-core repulsion = 24067.506283 eV Total energy + Delta-G solvation = -3879.344514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.52762 -39.50297 -37.21973 -36.39219 -34.34013 -33.46395 -32.82817 -31.35592 -30.78244 -30.39420 -28.16758 -26.97113 -25.55675 -24.21282 -22.74631 -22.29636 -21.88346 -21.34537 -20.14085 -19.78807 -17.77771 -17.37234 -16.74267 -16.46361 -16.23646 -15.39689 -15.12089 -14.67796 -14.42836 -14.42564 -14.24620 -13.93853 -13.77134 -13.62907 -13.29301 -13.06925 -12.90014 -12.81295 -12.66599 -12.55468 -12.48756 -12.31079 -11.92405 -11.55935 -11.28168 -11.11327 -11.00961 -10.95980 -10.86539 -10.76728 -10.48847 -10.24682 -9.98941 -9.92500 -9.70032 -9.59930 -9.13750 -8.63392 -8.52583 -8.28206 -6.68665 -5.84096 -3.37448 0.76718 1.13398 2.80934 3.03265 3.34341 3.44116 3.47273 3.52469 3.82565 4.05791 4.24859 4.47149 4.48039 4.60660 4.75797 4.85508 4.93946 5.05048 5.17688 5.23568 5.27958 5.36763 5.46411 5.47454 5.49805 5.71896 5.74999 5.79446 5.83189 5.98607 6.09667 6.12471 6.13992 6.16853 6.25485 6.28932 6.31865 6.51332 6.53315 6.63230 6.69856 6.86071 6.90620 7.02867 7.05737 7.25299 7.58427 7.79508 7.92286 8.44564 8.56914 9.12759 9.76533 10.31874 11.16325 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.002464 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.516621 B =11360.964350 C =12300.734658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.140 4.140 3 C 0.147 3.853 4 N -0.581 5.581 5 C -0.256 4.256 6 H 0.064 0.936 7 C 0.009 3.991 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.288 1.288 13 C 0.132 3.868 14 C 0.099 3.901 15 N -0.714 5.714 16 C 0.555 3.445 17 O -0.547 6.547 18 C -0.156 4.156 19 C -0.049 4.049 20 C -0.145 4.145 21 C 0.126 3.874 22 C -0.186 4.186 23 C -0.012 4.012 24 C -0.105 4.105 25 C 0.076 3.924 26 H 0.117 0.883 27 C -0.173 4.173 28 O -0.299 6.299 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.254 0.746 37 H 0.106 0.894 38 H 0.028 0.972 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.396 0.604 42 H 0.139 0.861 43 H 0.134 0.866 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.356 8.042 -18.224 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.385 4.385 6 H 0.082 0.918 7 C -0.191 4.191 8 N -0.530 5.530 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.214 1.214 13 C 0.005 3.995 14 C -0.026 4.026 15 N -0.364 5.364 16 C 0.341 3.659 17 O -0.426 6.426 18 C -0.159 4.159 19 C -0.068 4.068 20 C -0.164 4.164 21 C 0.080 3.920 22 C -0.187 4.187 23 C -0.031 4.031 24 C -0.142 4.142 25 C 0.020 3.980 26 H 0.134 0.866 27 C -0.230 4.230 28 O -0.212 6.212 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.123 0.877 38 H 0.046 0.954 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.156 0.844 43 H 0.152 0.848 44 H 0.155 0.845 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.294 8.530 -17.976 20.356 hybrid contribution 0.847 -0.173 0.478 0.988 sum 5.142 8.357 -17.498 20.062 Atomic orbital electron populations 1.21761 0.97775 1.00315 1.00716 1.22076 0.93040 1.00771 1.02067 1.20976 0.85018 0.93529 0.98383 1.43712 0.99494 1.84836 1.01980 1.19133 1.02707 1.26398 0.90276 0.91790 1.25067 1.00633 0.95206 0.98193 1.69970 1.23503 1.20131 1.39378 0.86346 0.81578 0.78171 0.81460 1.20037 1.21701 1.21431 1.21110 1.00797 0.90951 0.86655 1.22367 0.94821 1.02694 0.82694 1.46023 1.57659 1.07678 1.25059 1.18070 0.79351 0.84304 0.84146 1.90752 1.55532 1.31570 1.64794 1.19926 1.04952 0.93723 0.97348 1.21102 0.94460 0.97800 0.93457 1.20171 1.04244 0.95728 0.96253 1.19814 0.92075 0.94512 0.85562 1.20645 1.05311 0.94639 0.98063 1.20343 0.92654 0.98300 0.91791 1.21861 0.98777 0.96951 0.96578 1.23464 0.93755 0.79797 1.00943 0.86566 1.22262 0.95347 1.03151 1.02245 1.86849 1.68088 1.33060 1.33240 0.93393 0.93670 0.93883 0.93100 0.91861 0.93835 0.94806 0.93625 0.87682 0.95380 0.93150 0.91542 0.76926 0.84372 0.84786 0.84458 0.88751 0.88977 0.91241 0.90525 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.14 -2.69 6.26 -26.73 -0.17 -2.85 16 3 C 0.15 3.03 5.67 -4.04 -0.02 3.01 16 4 N -0.58 -13.88 2.45 -173.24 -0.42 -14.31 16 5 C -0.26 -6.77 9.49 -15.06 -0.14 -6.91 16 6 H 0.06 1.71 7.93 -52.49 -0.42 1.30 16 7 C 0.01 0.23 4.95 -17.43 -0.09 0.15 16 8 N -0.89 -24.31 11.31 55.49 0.63 -23.68 16 9 Si 0.89 21.33 29.61 -169.99 -5.03 16.29 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.13 2.91 5.41 -4.04 -0.02 2.89 16 14 C 0.10 2.02 6.00 -4.04 -0.02 2.00 16 15 N -0.71 -12.18 5.51 -61.32 -0.34 -12.52 16 16 C 0.55 9.73 7.77 -12.44 -0.10 9.63 16 17 O -0.55 -11.52 16.36 5.30 0.09 -11.43 16 18 C -0.16 -2.22 5.88 -104.92 -0.62 -2.83 16 19 C -0.05 -0.58 9.52 -39.30 -0.37 -0.96 16 20 C -0.15 -1.61 10.05 -39.36 -0.40 -2.00 16 21 C 0.13 1.46 6.95 -38.73 -0.27 1.19 16 22 C -0.19 -2.09 6.25 -104.13 -0.65 -2.74 16 23 C -0.01 -0.16 9.58 -39.33 -0.38 -0.53 16 24 C -0.10 -0.83 6.65 -26.51 -0.18 -1.00 16 25 C 0.08 0.57 4.31 -25.83 -0.11 0.45 16 26 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 27 C -0.17 -1.13 9.49 37.16 0.35 -0.78 16 28 O -0.30 -3.20 10.81 -19.73 -0.21 -3.41 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 34 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 36 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.11 2.59 5.31 -51.93 -0.28 2.31 16 38 H 0.03 0.57 8.07 -51.93 -0.42 0.16 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.40 5.69 6.51 -40.82 -0.27 5.42 16 42 H 0.14 1.36 6.40 -52.49 -0.34 1.02 16 43 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.14 1.80 7.66 -52.48 -0.40 1.40 16 45 H 0.09 0.62 7.92 -51.93 -0.41 0.21 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -31.27 401.47 -10.05 -41.32 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.99 Total: 4.87 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.81 Total: -3.19 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.13 Total: -50.51 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.13 Total: -14.84 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.27 -10.05 -41.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481151211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.622 kcal (2) G-P(sol) polarization free energy of solvation -31.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds