Wall clock time and date at job start Tue Mar 31 2020 16:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 N 1.46503 * 109.46954 * 180.02562 * 3 2 1 5 5 C 1.36933 * 119.99497 * 270.32419 * 4 3 2 6 6 H 1.07996 * 120.00681 * 326.14228 * 5 4 3 7 7 C 1.38814 * 119.99835 * 146.15198 * 5 4 3 8 8 N 1.31619 * 119.99746 * 336.89388 * 7 5 4 9 9 Si 1.86801 * 120.00356 * 156.89358 * 7 5 4 10 10 H 1.48497 * 109.46844 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47207 * 120.00037 * 9 7 5 12 12 H 1.48501 * 109.47325 * 240.00071 * 9 7 5 13 13 C 1.46494 * 120.00063 * 90.32508 * 4 3 2 14 14 C 1.53005 * 109.46940 * 89.99879 * 13 4 3 15 15 N 1.46504 * 109.46866 * 180.02562 * 14 13 4 16 16 C 1.34779 * 119.99715 * 179.97438 * 15 14 13 17 17 O 1.21580 * 120.00265 * 359.97438 * 16 15 14 18 18 C 1.47607 * 119.99515 * 179.97438 * 16 15 14 19 19 C 1.39746 * 120.26945 * 0.02562 * 18 16 15 20 20 C 1.37474 * 120.20274 * 179.85123 * 19 18 16 21 21 C 1.39590 * 120.42760 * 0.09351 * 20 19 18 22 22 C 1.39175 * 119.10420 * 0.15709 * 21 20 19 23 23 C 1.37312 * 120.93538 * 359.36181 * 22 21 20 24 24 C 1.51673 * 106.99811 * 179.44439 * 22 21 20 25 25 C 1.54703 * 101.89443 * 344.48353 * 24 22 21 26 26 H 1.09000 * 110.74383 * 143.70502 * 25 24 22 27 27 C 1.53004 * 110.74136 * 267.04230 * 25 24 22 28 28 O 1.35997 * 129.71281 * 180.59884 * 21 20 19 29 29 H 1.09001 * 109.46642 * 299.99630 * 1 2 3 30 30 H 1.08999 * 109.47389 * 59.99937 * 1 2 3 31 31 H 1.09000 * 109.47168 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46470 * 239.99866 * 2 1 3 33 33 H 1.08999 * 109.47389 * 120.00062 * 2 1 3 34 34 H 1.09002 * 109.46946 * 60.00089 * 3 2 1 35 35 H 1.08999 * 109.47040 * 300.00277 * 3 2 1 36 36 H 0.97001 * 120.00412 * 180.02562 * 8 7 5 37 37 H 1.08994 * 109.47271 * 210.00203 * 13 4 3 38 38 H 1.09004 * 109.47420 * 330.00021 * 13 4 3 39 39 H 1.08998 * 109.46896 * 299.99480 * 14 13 4 40 40 H 1.08998 * 109.47138 * 60.00248 * 14 13 4 41 41 H 0.96995 * 120.00083 * 0.02562 * 15 14 13 42 42 H 1.08001 * 119.90286 * 359.82422 * 19 18 16 43 43 H 1.07998 * 119.78330 * 180.02562 * 20 19 18 44 44 H 1.08006 * 120.06772 * 180.60801 * 23 22 21 45 45 H 1.08998 * 110.94847 * 226.33253 * 24 22 21 46 46 H 1.09003 * 110.94790 * 102.63028 * 24 22 21 47 47 H 1.08998 * 109.46949 * 174.85574 * 27 25 24 48 48 H 1.09006 * 109.46549 * 294.85195 * 27 25 24 49 49 H 1.09002 * 109.47102 * 54.84879 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.1902 1.4355 1.1850 6 1 3.7879 1.9516 2.0442 7 6 5.4019 0.7653 1.2826 8 7 5.6832 -0.2108 0.4456 9 14 6.6331 1.2487 2.6016 10 1 6.0808 2.3661 3.4087 11 1 6.8958 0.0837 3.4843 12 1 7.9014 1.6800 1.9607 13 6 4.2370 1.4498 -1.2696 14 6 4.4919 2.8949 -1.7029 15 7 5.2233 2.9023 -2.9723 16 6 5.5595 4.0729 -3.5495 17 8 5.2553 5.1227 -3.0171 18 6 6.2969 4.0802 -4.8281 19 6 6.6489 2.8768 -5.4452 20 6 7.3331 2.8853 -6.6376 21 6 7.6845 4.0932 -7.2425 22 6 7.3358 5.2884 -6.6205 23 6 6.6439 5.2913 -5.4344 24 6 7.8572 6.4123 -7.4955 25 6 8.8522 5.6652 -8.4148 26 1 8.8346 6.0816 -9.4220 27 6 10.2665 5.7106 -7.8327 28 8 8.3429 4.3210 -8.4105 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 6.5297 -0.6794 0.5139 37 1 5.1894 0.9352 -1.1427 38 1 3.6476 0.9404 -2.0320 39 1 3.5394 3.4094 -1.8300 40 1 5.0813 3.4043 -0.9406 41 1 5.4650 2.0647 -3.3976 42 1 6.3830 1.9372 -4.9839 43 1 7.6013 1.9513 -7.1088 44 1 6.3720 6.2271 -4.9688 45 1 8.3696 7.1660 -6.8977 46 1 7.0508 6.8599 -8.0765 47 1 10.9316 5.1031 -8.4464 48 1 10.6220 6.7410 -7.8219 49 1 10.2533 5.3201 -6.8151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481151211.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:54 Heat of formation + Delta-G solvation = -51.213235 kcal Electronic energy + Delta-G solvation = -27947.610305 eV Core-core repulsion = 24067.506283 eV Total energy + Delta-G solvation = -3880.104023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.34342 -40.83001 -38.40138 -37.99972 -35.87374 -34.56198 -34.18625 -32.77421 -31.94733 -31.45786 -29.66653 -27.74359 -27.32693 -25.58176 -24.17747 -23.17832 -22.95517 -22.57938 -21.59713 -21.32400 -19.07920 -18.41576 -18.13903 -17.57768 -17.15623 -16.94067 -16.60267 -16.34870 -15.89479 -15.71500 -15.41345 -15.22068 -14.76851 -14.66047 -14.54208 -14.43934 -14.24012 -14.06298 -13.64133 -13.62059 -13.56159 -13.23231 -13.05982 -12.99636 -12.76073 -12.54995 -12.50832 -12.17301 -12.14235 -12.03079 -11.86140 -11.81183 -11.78520 -11.71340 -11.32290 -11.10366 -10.56030 -10.12796 -10.02938 -9.24712 -8.64089 -7.85755 -5.41949 -0.24832 0.22873 1.42516 1.47914 1.56365 1.73227 2.10275 2.21716 2.51466 2.73681 3.22497 3.37563 3.51345 3.64628 3.78064 3.85679 3.93437 4.07943 4.14258 4.26307 4.27796 4.37073 4.37579 4.45804 4.54605 4.63241 4.69055 4.75786 4.78289 4.79898 4.83452 4.89009 4.97650 5.03060 5.08437 5.16766 5.21274 5.22307 5.23782 5.25941 5.28670 5.36454 5.44531 5.47509 5.62390 5.67228 5.81498 6.07042 6.43629 6.55920 7.13113 7.19681 7.83644 8.33635 9.11253 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014381 B = 0.002464 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.516621 B =11360.964350 C =12300.734658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.143 3.857 4 N -0.597 5.597 5 C -0.265 4.265 6 H 0.055 0.945 7 C -0.032 4.032 8 N -0.907 5.907 9 Si 0.947 3.053 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.291 1.291 13 C 0.141 3.859 14 C 0.120 3.880 15 N -0.707 5.707 16 C 0.555 3.445 17 O -0.590 6.590 18 C -0.178 4.178 19 C -0.044 4.044 20 C -0.148 4.148 21 C 0.126 3.874 22 C -0.189 4.189 23 C -0.022 4.022 24 C -0.104 4.104 25 C 0.072 3.928 26 H 0.147 0.853 27 C -0.171 4.171 28 O -0.308 6.308 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.253 0.747 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.033 0.967 41 H 0.410 0.590 42 H 0.155 0.845 43 H 0.157 0.843 44 H 0.129 0.871 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.072 0.928 48 H 0.098 0.902 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 8.357 -20.383 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.018 3.982 4 N -0.317 5.317 5 C -0.395 4.395 6 H 0.072 0.928 7 C -0.229 4.229 8 N -0.552 5.552 9 Si 0.776 3.224 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.218 1.218 13 C 0.014 3.986 14 C -0.006 4.006 15 N -0.358 5.358 16 C 0.344 3.656 17 O -0.472 6.472 18 C -0.182 4.182 19 C -0.063 4.063 20 C -0.166 4.166 21 C 0.079 3.921 22 C -0.190 4.190 23 C -0.041 4.041 24 C -0.140 4.140 25 C 0.017 3.983 26 H 0.164 0.836 27 C -0.228 4.228 28 O -0.222 6.222 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.248 0.752 42 H 0.173 0.827 43 H 0.175 0.825 44 H 0.147 0.853 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.091 0.909 48 H 0.117 0.883 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.566 8.829 -20.161 22.478 hybrid contribution 0.785 -0.225 1.041 1.323 sum 5.351 8.604 -19.120 21.639 Atomic orbital electron populations 1.21669 0.94286 1.01703 1.01941 1.21910 0.96032 0.99044 1.00000 1.21107 0.83284 0.94634 0.99161 1.43937 1.00944 1.85052 1.01816 1.19258 1.03321 1.25927 0.91007 0.92758 1.25607 1.01828 0.95414 1.00081 1.70058 1.23662 1.20813 1.40622 0.85529 0.79547 0.77750 0.79567 1.19846 1.21535 1.21764 1.20963 0.99754 0.91461 0.86465 1.21875 0.94318 1.01116 0.83295 1.45836 1.57369 1.08600 1.23993 1.18577 0.78682 0.83445 0.84903 1.90718 1.57336 1.32936 1.66222 1.19690 1.06715 0.95325 0.96425 1.21243 0.93917 0.97494 0.93597 1.20433 1.03570 0.96742 0.95870 1.20063 0.91521 0.94754 0.85732 1.20928 1.04334 0.96302 0.97447 1.20346 0.93434 0.97673 0.92670 1.22006 0.99400 0.96315 0.96315 1.23806 0.93700 0.78215 1.02530 0.83604 1.22278 0.95069 1.04546 1.00945 1.86849 1.67836 1.34942 1.32594 0.92633 0.91968 0.92454 0.94103 0.94949 0.94015 0.92951 0.93804 0.89992 0.93808 0.93473 0.94893 0.75234 0.82706 0.82541 0.85276 0.87369 0.87529 0.90850 0.88328 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.91 71.98 0.71 -3.21 16 2 C -0.13 -4.94 6.26 30.60 0.19 -4.75 16 3 C 0.14 5.87 5.67 86.38 0.49 6.36 16 4 N -0.60 -28.96 2.45 -702.01 -1.72 -30.68 16 5 C -0.26 -14.32 9.49 84.03 0.80 -13.52 16 6 H 0.05 2.98 7.93 -2.91 -0.02 2.96 16 7 C -0.03 -1.72 4.95 84.86 0.42 -1.30 16 8 N -0.91 -50.51 11.31 21.65 0.24 -50.27 16 9 Si 0.95 44.56 29.61 68.60 2.03 46.59 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 C 0.14 6.26 5.41 86.38 0.47 6.73 16 14 C 0.12 5.02 6.00 86.38 0.52 5.53 16 15 N -0.71 -24.45 5.51 -466.19 -2.57 -27.02 16 16 C 0.55 19.94 7.77 86.72 0.67 20.61 16 17 O -0.59 -25.79 16.36 -3.97 -0.06 -25.86 16 18 C -0.18 -5.07 5.88 -20.06 -0.12 -5.19 16 19 C -0.04 -0.99 9.52 22.45 0.21 -0.78 16 20 C -0.15 -3.01 10.05 22.42 0.23 -2.78 16 21 C 0.13 2.68 6.95 22.82 0.16 2.84 16 22 C -0.19 -4.03 6.25 -19.55 -0.12 -4.16 16 23 C -0.02 -0.58 9.58 22.43 0.21 -0.37 16 24 C -0.10 -1.39 6.65 30.74 0.20 -1.18 16 25 C 0.07 0.87 4.31 31.18 0.13 1.00 16 26 H 0.15 0.90 8.14 -2.39 -0.02 0.89 16 27 C -0.17 -1.83 9.49 71.98 0.68 -1.15 16 28 O -0.31 -5.86 10.81 -93.51 -1.01 -6.87 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 35 H 0.05 1.93 8.07 -2.39 -0.02 1.91 16 36 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 37 H 0.08 4.12 5.31 -2.39 -0.01 4.11 16 38 H 0.04 1.78 8.07 -2.38 -0.02 1.76 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.41 11.69 6.51 -92.71 -0.60 11.09 16 42 H 0.16 2.83 6.40 -2.91 -0.02 2.81 16 43 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 44 H 0.13 3.51 7.66 -2.91 -0.02 3.49 16 45 H 0.11 1.16 7.92 -2.39 -0.02 1.14 16 46 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 49 H 0.04 0.67 8.12 -2.39 -0.02 0.65 16 Total: -1.00 -69.07 401.47 3.11 -65.96 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.34 Total: 23.45 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 5.87 Total: 4.69 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -4.04 Total: -107.97 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.08 Total: -32.72 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -69.07 3.11 -65.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481151211.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.743 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds