Wall clock time and date at job start Tue Mar 31 2020 16:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47735 * 2 1 4 4 N 1.46492 * 109.47371 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99873 * 270.31889 * 4 3 2 6 6 H 1.08003 * 119.99938 * 326.14188 * 5 4 3 7 7 C 1.38810 * 120.00238 * 146.14098 * 5 4 3 8 8 N 1.31615 * 120.00008 * 336.90741 * 7 5 4 9 9 Si 1.86802 * 120.00218 * 156.90313 * 7 5 4 10 10 H 1.48502 * 109.46770 * 60.00129 * 9 7 5 11 11 H 1.48495 * 109.47183 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47051 * 300.00607 * 9 7 5 13 13 C 1.46496 * 120.00584 * 90.31658 * 4 3 2 14 14 C 1.53004 * 109.47051 * 89.99632 * 13 4 3 15 15 N 1.46505 * 109.47180 * 180.02562 * 14 13 4 16 16 C 1.34769 * 120.00099 * 180.02562 * 15 14 13 17 17 O 1.21581 * 119.99909 * 0.02562 * 16 15 14 18 18 C 1.47599 * 120.00239 * 180.02562 * 16 15 14 19 19 C 1.39761 * 120.26403 * 359.97438 * 18 16 15 20 20 C 1.37465 * 120.19922 * 179.80870 * 19 18 16 21 21 C 1.39580 * 120.42962 * 359.97438 * 20 19 18 22 22 C 1.39186 * 119.11186 * 0.37652 * 21 20 19 23 23 C 1.37304 * 120.93059 * 359.42282 * 22 21 20 24 24 C 1.51675 * 107.00151 * 179.00623 * 22 21 20 25 25 C 1.54701 * 101.92395 * 344.85062 * 24 22 21 26 26 H 1.08996 * 110.74092 * 266.96239 * 25 24 22 27 27 C 1.52999 * 110.90463 * 143.69135 * 25 24 22 28 28 O 1.36000 * 129.73110 * 180.95925 * 21 20 19 29 29 H 1.09005 * 109.46766 * 60.00397 * 1 2 3 30 30 H 1.08990 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46974 * 300.00697 * 1 2 3 32 32 H 1.09002 * 109.47548 * 239.99052 * 2 1 3 33 33 H 1.09008 * 109.46910 * 120.00111 * 2 1 3 34 34 H 1.08995 * 109.47121 * 59.99173 * 3 2 1 35 35 H 1.09005 * 109.46669 * 299.99662 * 3 2 1 36 36 H 0.97003 * 119.99972 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46825 * 330.00261 * 13 4 3 38 38 H 1.08999 * 109.47676 * 210.00441 * 13 4 3 39 39 H 1.09000 * 109.46793 * 60.00609 * 14 13 4 40 40 H 1.08992 * 109.47283 * 300.00602 * 14 13 4 41 41 H 0.97001 * 119.99727 * 0.02562 * 15 14 13 42 42 H 1.07994 * 119.89845 * 359.78514 * 19 18 16 43 43 H 1.08001 * 119.78592 * 179.97438 * 20 19 18 44 44 H 1.07997 * 120.07410 * 180.36716 * 23 22 21 45 45 H 1.09006 * 110.94055 * 103.00430 * 24 22 21 46 46 H 1.09000 * 110.94186 * 226.68694 * 24 22 21 47 47 H 1.08999 * 109.47005 * 305.07592 * 27 25 24 48 48 H 1.09002 * 109.46976 * 65.06815 * 27 25 24 49 49 H 1.08996 * 109.47472 * 185.06833 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1902 1.4355 1.1851 6 1 3.7880 1.9518 2.0442 7 6 5.4018 0.7651 1.2827 8 7 5.6831 -0.2110 0.4459 9 14 6.6330 1.2484 2.6018 10 1 6.0171 1.0734 3.9417 11 1 7.8378 0.3869 2.4939 12 1 7.0230 2.6695 2.4181 13 6 4.2371 1.4495 -1.2695 14 6 4.4920 2.8945 -1.7031 15 7 5.2236 2.9017 -2.9724 16 6 5.5607 4.0721 -3.5493 17 8 5.2581 5.1220 -3.0161 18 6 6.2972 4.0794 -4.8283 19 6 6.6484 2.8757 -5.4458 20 6 7.3309 2.8841 -6.6390 21 6 7.6794 4.0919 -7.2457 22 6 7.3335 5.2873 -6.6224 23 6 6.6482 5.2904 -5.4326 24 6 7.8603 6.4109 -7.4945 25 6 8.8477 5.6611 -8.4198 26 1 9.8568 5.6861 -8.0087 27 6 8.8254 6.2487 -9.8323 28 8 8.3301 4.3199 -8.4180 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 6.5299 -0.6792 0.5139 37 1 3.6477 0.9401 -2.0319 38 1 5.1895 0.9348 -1.1425 39 1 5.0814 3.4040 -0.9408 40 1 3.5396 3.4091 -1.8301 41 1 5.4653 2.0640 -3.3976 42 1 6.3830 1.9363 -4.9840 43 1 7.5993 1.9500 -7.1101 44 1 6.3817 6.2261 -4.9639 45 1 7.0554 6.8665 -8.0714 46 1 8.3795 7.1587 -6.8951 47 1 7.8038 6.2429 -10.2122 48 1 9.1973 7.2729 -9.8057 49 1 9.4594 5.6489 -10.4854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481151212.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:59 Heat of formation + Delta-G solvation = -33.758541 kcal Electronic energy + Delta-G solvation = -27816.253881 eV Core-core repulsion = 23936.906751 eV Total energy + Delta-G solvation = -3879.347130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.46004 -39.49640 -37.23215 -36.39034 -34.33801 -33.50467 -32.83153 -31.57312 -30.81617 -30.38093 -28.19442 -26.77175 -25.55322 -24.12839 -22.72432 -22.15340 -22.02809 -21.34175 -20.15540 -19.78702 -17.80546 -17.69766 -16.89932 -16.50499 -15.84673 -15.41193 -15.09505 -14.69638 -14.42970 -14.36023 -14.21704 -13.89448 -13.81488 -13.48860 -13.31550 -13.24063 -13.02676 -12.80797 -12.68609 -12.63237 -12.43409 -12.26228 -11.92749 -11.62635 -11.27069 -11.10852 -10.99631 -10.91553 -10.86138 -10.75539 -10.49515 -10.26958 -9.98417 -9.93652 -9.69941 -9.59917 -9.14475 -8.63165 -8.51592 -8.28311 -6.68310 -5.83789 -3.37223 0.76342 1.13079 2.79514 3.00130 3.36294 3.42591 3.46708 3.51968 3.82052 4.09054 4.16847 4.47425 4.51655 4.61356 4.74965 4.84941 4.92955 5.04971 5.13666 5.21720 5.28224 5.31296 5.45635 5.47931 5.52021 5.63003 5.75126 5.79293 5.83359 5.98243 6.09862 6.12052 6.14108 6.17047 6.25595 6.29111 6.31857 6.51529 6.53643 6.63437 6.70088 6.86218 6.90566 7.03237 7.06027 7.25499 7.58627 7.79165 7.92448 8.44919 8.57076 9.13061 9.76862 10.32219 11.16693 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.002365 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.190816 B =11837.087197 C =12689.970576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.257 4.257 6 H 0.064 0.936 7 C 0.009 3.991 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.282 1.282 13 C 0.132 3.868 14 C 0.099 3.901 15 N -0.714 5.714 16 C 0.555 3.445 17 O -0.547 6.547 18 C -0.156 4.156 19 C -0.049 4.049 20 C -0.145 4.145 21 C 0.126 3.874 22 C -0.187 4.187 23 C -0.012 4.012 24 C -0.104 4.104 25 C 0.075 3.925 26 H 0.088 0.912 27 C -0.149 4.149 28 O -0.301 6.301 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.255 0.745 37 H 0.028 0.972 38 H 0.106 0.894 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.396 0.604 42 H 0.139 0.861 43 H 0.135 0.865 44 H 0.138 0.862 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.942 8.181 -18.885 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.180 4.180 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.387 4.387 6 H 0.081 0.919 7 C -0.190 4.190 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.208 1.208 13 C 0.005 3.995 14 C -0.026 4.026 15 N -0.364 5.364 16 C 0.341 3.659 17 O -0.426 6.426 18 C -0.159 4.159 19 C -0.068 4.068 20 C -0.163 4.163 21 C 0.080 3.920 22 C -0.188 4.188 23 C -0.031 4.031 24 C -0.141 4.141 25 C 0.020 3.980 26 H 0.106 0.894 27 C -0.206 4.206 28 O -0.215 6.215 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.046 0.954 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.231 0.769 42 H 0.157 0.843 43 H 0.152 0.848 44 H 0.156 0.844 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.086 0.914 48 H 0.098 0.902 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.883 8.659 -18.649 20.925 hybrid contribution 0.839 -0.178 0.527 1.006 sum 4.722 8.481 -18.122 20.558 Atomic orbital electron populations 1.21758 0.97777 1.00312 1.00714 1.22076 0.93038 1.00780 1.02069 1.20971 0.85017 0.93525 0.98375 1.43692 0.99476 1.84844 1.01955 1.19057 1.02807 1.26518 0.90300 0.91867 1.25063 1.00618 0.95156 0.98205 1.69952 1.23628 1.20017 1.39420 0.86469 0.80937 0.78293 0.81759 1.20714 1.21632 1.20839 1.21112 1.00794 0.90946 0.86663 1.22371 0.94823 1.02702 0.82694 1.46022 1.57632 1.07673 1.25080 1.18063 0.79357 0.84313 0.84144 1.90753 1.55552 1.31566 1.64766 1.19935 1.04910 0.93722 0.97368 1.21105 0.94422 0.97807 0.93448 1.20164 1.04217 0.95709 0.96246 1.19798 0.92166 0.94543 0.85459 1.20668 1.05454 0.94667 0.98028 1.20347 0.92645 0.98320 0.91743 1.21864 0.98946 0.96881 0.96429 1.23432 0.97573 0.79505 0.97537 0.89390 1.21884 1.03611 1.01036 0.94113 1.86818 1.68503 1.33109 1.33030 0.93673 0.93885 0.93395 0.93097 0.91862 0.93842 0.94813 0.93508 0.95379 0.87688 0.91526 0.93154 0.76924 0.84339 0.84750 0.84434 0.88935 0.88847 0.91367 0.90177 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.14 -2.69 6.26 -26.73 -0.17 -2.86 16 3 C 0.15 3.04 5.67 -4.05 -0.02 3.01 16 4 N -0.58 -13.87 2.45 -173.24 -0.42 -14.30 16 5 C -0.26 -6.82 9.49 -15.06 -0.14 -6.96 16 6 H 0.06 1.69 7.93 -52.48 -0.42 1.27 16 7 C 0.01 0.25 4.95 -17.43 -0.09 0.17 16 8 N -0.89 -24.36 11.31 55.49 0.63 -23.73 16 9 Si 0.90 21.36 29.61 -169.99 -5.03 16.33 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.13 2.91 5.41 -4.04 -0.02 2.89 16 14 C 0.10 2.03 6.00 -4.04 -0.02 2.00 16 15 N -0.71 -12.20 5.51 -61.33 -0.34 -12.54 16 16 C 0.55 9.75 7.77 -12.44 -0.10 9.66 16 17 O -0.55 -11.55 16.36 5.29 0.09 -11.46 16 18 C -0.16 -2.22 5.88 -104.92 -0.62 -2.84 16 19 C -0.05 -0.58 9.52 -39.29 -0.37 -0.95 16 20 C -0.14 -1.61 10.05 -39.36 -0.40 -2.00 16 21 C 0.13 1.48 7.04 -38.73 -0.27 1.21 16 22 C -0.19 -2.14 6.26 -104.13 -0.65 -2.79 16 23 C -0.01 -0.15 9.58 -39.33 -0.38 -0.53 16 24 C -0.10 -0.84 6.65 -26.51 -0.18 -1.02 16 25 C 0.08 0.58 4.25 -25.84 -0.11 0.47 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 C -0.15 -0.79 9.61 37.16 0.36 -0.44 16 28 O -0.30 -3.28 10.80 -19.74 -0.21 -3.49 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.37 8.14 -51.92 -0.42 0.95 16 34 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 36 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 37 H 0.03 0.57 8.07 -51.93 -0.42 0.16 16 38 H 0.11 2.59 5.31 -51.93 -0.28 2.31 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.40 5.69 6.51 -40.82 -0.27 5.42 16 42 H 0.14 1.36 6.40 -52.49 -0.34 1.02 16 43 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 44 H 0.14 1.81 7.66 -52.49 -0.40 1.41 16 45 H 0.09 0.66 7.91 -51.93 -0.41 0.25 16 46 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 48 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -31.30 401.59 -10.05 -41.34 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -7.99 Total: 4.69 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.81 Total: -2.88 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.13 Total: -50.56 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: -0.13 Total: -14.96 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.30 -10.05 -41.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481151212.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.583 kcal (2) G-P(sol) polarization free energy of solvation -31.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds