Wall clock time and date at job start Tue Mar 31 2020 16:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47735 * 2 1 4 4 N 1.46492 * 109.47371 * 180.02562 * 3 2 1 5 5 C 1.36943 * 119.99873 * 270.31889 * 4 3 2 6 6 H 1.08003 * 119.99938 * 326.14188 * 5 4 3 7 7 C 1.38810 * 120.00238 * 146.14098 * 5 4 3 8 8 N 1.31615 * 120.00008 * 336.90741 * 7 5 4 9 9 Si 1.86802 * 120.00218 * 156.90313 * 7 5 4 10 10 H 1.48502 * 109.46770 * 60.00129 * 9 7 5 11 11 H 1.48495 * 109.47183 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47051 * 300.00607 * 9 7 5 13 13 C 1.46496 * 120.00584 * 90.31658 * 4 3 2 14 14 C 1.53004 * 109.47051 * 89.99632 * 13 4 3 15 15 N 1.46505 * 109.47180 * 180.02562 * 14 13 4 16 16 C 1.34769 * 120.00099 * 180.02562 * 15 14 13 17 17 O 1.21581 * 119.99909 * 0.02562 * 16 15 14 18 18 C 1.47599 * 120.00239 * 180.02562 * 16 15 14 19 19 C 1.39761 * 120.26403 * 359.97438 * 18 16 15 20 20 C 1.37465 * 120.19922 * 179.80870 * 19 18 16 21 21 C 1.39580 * 120.42962 * 359.97438 * 20 19 18 22 22 C 1.39186 * 119.11186 * 0.37652 * 21 20 19 23 23 C 1.37304 * 120.93059 * 359.42282 * 22 21 20 24 24 C 1.51675 * 107.00151 * 179.00623 * 22 21 20 25 25 C 1.54701 * 101.92395 * 344.85062 * 24 22 21 26 26 H 1.08996 * 110.74092 * 266.96239 * 25 24 22 27 27 C 1.52999 * 110.90463 * 143.69135 * 25 24 22 28 28 O 1.36000 * 129.73110 * 180.95925 * 21 20 19 29 29 H 1.09005 * 109.46766 * 60.00397 * 1 2 3 30 30 H 1.08990 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46974 * 300.00697 * 1 2 3 32 32 H 1.09002 * 109.47548 * 239.99052 * 2 1 3 33 33 H 1.09008 * 109.46910 * 120.00111 * 2 1 3 34 34 H 1.08995 * 109.47121 * 59.99173 * 3 2 1 35 35 H 1.09005 * 109.46669 * 299.99662 * 3 2 1 36 36 H 0.97003 * 119.99972 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.46825 * 330.00261 * 13 4 3 38 38 H 1.08999 * 109.47676 * 210.00441 * 13 4 3 39 39 H 1.09000 * 109.46793 * 60.00609 * 14 13 4 40 40 H 1.08992 * 109.47283 * 300.00602 * 14 13 4 41 41 H 0.97001 * 119.99727 * 0.02562 * 15 14 13 42 42 H 1.07994 * 119.89845 * 359.78514 * 19 18 16 43 43 H 1.08001 * 119.78592 * 179.97438 * 20 19 18 44 44 H 1.07997 * 120.07410 * 180.36716 * 23 22 21 45 45 H 1.09006 * 110.94055 * 103.00430 * 24 22 21 46 46 H 1.09000 * 110.94186 * 226.68694 * 24 22 21 47 47 H 1.08999 * 109.47005 * 305.07592 * 27 25 24 48 48 H 1.09002 * 109.46976 * 65.06815 * 27 25 24 49 49 H 1.08996 * 109.47472 * 185.06833 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1902 1.4355 1.1851 6 1 3.7880 1.9518 2.0442 7 6 5.4018 0.7651 1.2827 8 7 5.6831 -0.2110 0.4459 9 14 6.6330 1.2484 2.6018 10 1 6.0171 1.0734 3.9417 11 1 7.8378 0.3869 2.4939 12 1 7.0230 2.6695 2.4181 13 6 4.2371 1.4495 -1.2695 14 6 4.4920 2.8945 -1.7031 15 7 5.2236 2.9017 -2.9724 16 6 5.5607 4.0721 -3.5493 17 8 5.2581 5.1220 -3.0161 18 6 6.2972 4.0794 -4.8283 19 6 6.6484 2.8757 -5.4458 20 6 7.3309 2.8841 -6.6390 21 6 7.6794 4.0919 -7.2457 22 6 7.3335 5.2873 -6.6224 23 6 6.6482 5.2904 -5.4326 24 6 7.8603 6.4109 -7.4945 25 6 8.8477 5.6611 -8.4198 26 1 9.8568 5.6861 -8.0087 27 6 8.8254 6.2487 -9.8323 28 8 8.3301 4.3199 -8.4180 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9562 -0.8901 36 1 6.5299 -0.6792 0.5139 37 1 3.6477 0.9401 -2.0319 38 1 5.1895 0.9348 -1.1425 39 1 5.0814 3.4040 -0.9408 40 1 3.5396 3.4091 -1.8301 41 1 5.4653 2.0640 -3.3976 42 1 6.3830 1.9363 -4.9840 43 1 7.5993 1.9500 -7.1101 44 1 6.3817 6.2261 -4.9639 45 1 7.0554 6.8665 -8.0714 46 1 8.3795 7.1587 -6.8951 47 1 7.8038 6.2429 -10.2122 48 1 9.1973 7.2729 -9.8057 49 1 9.4594 5.6489 -10.4854 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481151212.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:58 Heat of formation + Delta-G solvation = -51.254250 kcal Electronic energy + Delta-G solvation = -27817.012552 eV Core-core repulsion = 23936.906751 eV Total energy + Delta-G solvation = -3880.105801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.29365 -40.82525 -38.40695 -38.00884 -35.87498 -34.56083 -34.21714 -32.81739 -32.14184 -31.44193 -29.69956 -27.55749 -27.32295 -25.50781 -24.15277 -23.06471 -22.90768 -22.70386 -21.59994 -21.33893 -19.06317 -18.60671 -18.32032 -17.74341 -17.01036 -16.95531 -16.42929 -16.33309 -15.89030 -15.71032 -15.40718 -15.25704 -14.78491 -14.64431 -14.51043 -14.27123 -14.17356 -14.07474 -13.92389 -13.62885 -13.40952 -13.33865 -13.03882 -12.95337 -12.72817 -12.56965 -12.51278 -12.24193 -12.16411 -12.02917 -11.87109 -11.80118 -11.73839 -11.69656 -11.32147 -11.10474 -10.55008 -10.12973 -10.04401 -9.26007 -8.63694 -7.85530 -5.41754 -0.25964 0.21836 1.44418 1.48521 1.54118 1.72774 2.08914 2.17941 2.51709 2.72283 3.22698 3.35229 3.49345 3.64398 3.75482 3.84965 3.99375 4.07733 4.12997 4.21413 4.27920 4.37183 4.38121 4.47997 4.55127 4.64548 4.69129 4.72560 4.78259 4.82895 4.83654 4.88611 4.97804 5.04107 5.07641 5.16715 5.20937 5.22961 5.23886 5.24989 5.28761 5.36801 5.45014 5.47640 5.62324 5.67171 5.81559 6.06071 6.43718 6.55893 7.13284 7.19678 7.83965 8.33913 9.11345 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015065 B = 0.002365 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.190816 B =11837.087197 C =12689.970576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.143 3.857 4 N -0.596 5.596 5 C -0.267 4.267 6 H 0.055 0.945 7 C -0.031 4.031 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.288 1.288 13 C 0.141 3.859 14 C 0.120 3.880 15 N -0.706 5.706 16 C 0.555 3.445 17 O -0.590 6.590 18 C -0.178 4.178 19 C -0.043 4.043 20 C -0.146 4.146 21 C 0.125 3.875 22 C -0.191 4.191 23 C -0.021 4.021 24 C -0.103 4.103 25 C 0.069 3.931 26 H 0.099 0.901 27 C -0.145 4.145 28 O -0.311 6.311 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.032 0.968 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.253 0.747 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.032 0.968 40 H 0.047 0.953 41 H 0.411 0.589 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.130 0.870 45 H 0.104 0.896 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.102 0.898 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 8.393 -20.890 22.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C 0.018 3.982 4 N -0.317 5.317 5 C -0.397 4.397 6 H 0.073 0.927 7 C -0.229 4.229 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.214 1.214 13 C 0.013 3.987 14 C -0.006 4.006 15 N -0.358 5.358 16 C 0.344 3.656 17 O -0.472 6.472 18 C -0.181 4.181 19 C -0.061 4.061 20 C -0.164 4.164 21 C 0.078 3.922 22 C -0.192 4.192 23 C -0.040 4.040 24 C -0.139 4.139 25 C 0.014 3.986 26 H 0.117 0.883 27 C -0.202 4.202 28 O -0.225 6.225 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.248 0.752 42 H 0.174 0.826 43 H 0.176 0.824 44 H 0.148 0.852 45 H 0.122 0.878 46 H 0.128 0.872 47 H 0.083 0.917 48 H 0.121 0.879 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.155 8.854 -20.679 22.876 hybrid contribution 0.769 -0.199 1.045 1.312 sum 4.924 8.655 -19.634 22.015 Atomic orbital electron populations 1.21666 0.94292 1.01700 1.01937 1.21911 0.96027 0.99055 1.00004 1.21104 0.83287 0.94629 0.99158 1.43917 1.00922 1.85057 1.01788 1.19206 1.03423 1.26040 0.91061 0.92744 1.25609 1.01824 0.95362 1.00114 1.70046 1.23728 1.20709 1.40674 0.85646 0.79157 0.77404 0.80109 1.20161 1.21508 1.21427 1.20969 0.99775 0.91442 0.86485 1.21877 0.94306 1.01136 0.83284 1.45832 1.57330 1.08600 1.23998 1.18568 0.78687 0.83456 0.84897 1.90720 1.57362 1.32945 1.66198 1.19699 1.06645 0.95320 0.96434 1.21253 0.93819 0.97514 0.93559 1.20428 1.03479 0.96687 0.95839 1.20061 0.91671 0.94836 0.85620 1.20944 1.04569 0.96283 0.97434 1.20349 0.93385 0.97730 0.92585 1.21997 0.99467 0.96309 0.96164 1.23748 0.97768 0.78017 0.99020 0.88292 1.21913 1.03662 1.02180 0.92465 1.86821 1.68263 1.34971 1.32455 0.91971 0.92455 0.92639 0.94090 0.94957 0.94015 0.92957 0.93767 0.93781 0.89971 0.94958 0.93475 0.75203 0.82595 0.82439 0.85221 0.87803 0.87242 0.91692 0.87917 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.91 71.98 0.71 -3.21 16 2 C -0.13 -4.94 6.26 30.59 0.19 -4.75 16 3 C 0.14 5.87 5.67 86.38 0.49 6.36 16 4 N -0.60 -28.91 2.45 -702.02 -1.72 -30.63 16 5 C -0.27 -14.43 9.49 84.03 0.80 -13.64 16 6 H 0.05 2.98 7.93 -2.91 -0.02 2.96 16 7 C -0.03 -1.70 4.95 84.86 0.42 -1.28 16 8 N -0.91 -50.54 11.31 21.65 0.24 -50.29 16 9 Si 0.95 44.56 29.61 68.60 2.03 46.59 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 13 C 0.14 6.25 5.41 86.38 0.47 6.71 16 14 C 0.12 5.02 6.00 86.38 0.52 5.54 16 15 N -0.71 -24.40 5.51 -466.21 -2.57 -26.97 16 16 C 0.55 19.93 7.77 86.72 0.67 20.60 16 17 O -0.59 -25.84 16.36 -3.97 -0.06 -25.90 16 18 C -0.18 -5.05 5.88 -20.06 -0.12 -5.17 16 19 C -0.04 -0.96 9.52 22.46 0.21 -0.75 16 20 C -0.15 -2.96 10.05 22.41 0.23 -2.74 16 21 C 0.12 2.70 7.04 22.82 0.16 2.86 16 22 C -0.19 -4.15 6.26 -19.55 -0.12 -4.27 16 23 C -0.02 -0.56 9.58 22.43 0.21 -0.35 16 24 C -0.10 -1.44 6.65 30.74 0.20 -1.24 16 25 C 0.07 0.90 4.25 31.17 0.13 1.03 16 26 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 27 C -0.15 -1.14 9.61 71.98 0.69 -0.45 16 28 O -0.31 -6.11 10.80 -93.55 -1.01 -7.12 16 29 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.03 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 35 H 0.05 1.93 8.07 -2.38 -0.02 1.91 16 36 H 0.25 13.68 8.31 -92.71 -0.77 12.90 16 37 H 0.04 1.79 8.07 -2.39 -0.02 1.77 16 38 H 0.08 4.13 5.31 -2.39 -0.01 4.11 16 39 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.41 11.63 6.51 -92.71 -0.60 11.03 16 42 H 0.16 2.81 6.40 -2.91 -0.02 2.79 16 43 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 44 H 0.13 3.53 7.66 -2.91 -0.02 3.51 16 45 H 0.10 1.24 7.91 -2.38 -0.02 1.22 16 46 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 0.57 8.12 -2.39 -0.02 0.55 16 48 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 49 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -68.90 401.59 3.12 -65.78 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 0.34 Total: 23.28 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 5.87 Total: 5.27 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -4.04 Total: -107.89 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.08 Total: -33.02 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -68.90 3.12 -65.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481151212.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.523 kcal (2) G-P(sol) polarization free energy of solvation -68.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds