Wall clock time and date at job start Tue Mar 31 2020 16:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47393 * 2 1 4 4 N 1.46500 * 109.47157 * 179.97438 * 3 2 1 5 5 C 1.36943 * 119.99587 * 90.00557 * 4 3 2 6 6 H 1.07995 * 119.99494 * 217.57702 * 5 4 3 7 7 C 1.38814 * 119.99950 * 37.57046 * 5 4 3 8 8 N 1.31613 * 120.00358 * 21.43963 * 7 5 4 9 9 Si 1.86800 * 119.99672 * 201.43310 * 7 5 4 10 10 H 1.48504 * 109.47575 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46918 * 120.00468 * 9 7 5 12 12 H 1.48494 * 109.47152 * 240.00278 * 9 7 5 13 13 C 1.46489 * 120.00411 * 270.00014 * 4 3 2 14 14 C 1.53002 * 109.47238 * 95.31340 * 13 4 3 15 15 N 1.46503 * 109.47243 * 180.02562 * 14 13 4 16 16 C 1.34781 * 119.99892 * 180.02562 * 15 14 13 17 17 O 1.21278 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99908 * 180.02562 * 16 15 14 19 19 C 1.52991 * 109.47011 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.13442 * 54.30435 * 19 18 16 21 21 O 1.43936 * 110.15657 * 292.59813 * 19 18 16 22 22 C 1.44110 * 104.86544 * 269.29914 * 21 19 18 23 23 C 1.51096 * 105.96971 * 331.55005 * 22 21 19 24 24 C 1.37967 * 132.68556 * 197.69675 * 23 22 21 25 25 C 1.38298 * 119.91418 * 180.02562 * 24 23 22 26 26 C 1.38259 * 120.04353 * 359.97438 * 25 24 23 27 27 C 1.38294 * 120.04191 * 0.02562 * 26 25 24 28 28 C 1.37977 * 119.92098 * 359.95790 * 27 26 25 29 29 H 1.09002 * 109.47187 * 299.99998 * 1 2 3 30 30 H 1.09003 * 109.47085 * 59.99730 * 1 2 3 31 31 H 1.09005 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47085 * 120.00270 * 2 1 3 33 33 H 1.09002 * 109.47187 * 240.00002 * 2 1 3 34 34 H 1.08994 * 109.47039 * 300.00185 * 3 2 1 35 35 H 1.09002 * 109.46952 * 59.99859 * 3 2 1 36 36 H 0.96995 * 120.00329 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47507 * 215.31145 * 13 4 3 38 38 H 1.09005 * 109.47215 * 335.31371 * 13 4 3 39 39 H 1.09003 * 109.47143 * 300.00036 * 14 13 4 40 40 H 1.08991 * 109.46919 * 59.99864 * 14 13 4 41 41 H 0.97003 * 119.99945 * 0.02562 * 15 14 13 42 42 H 1.09003 * 109.46864 * 299.99906 * 18 16 15 43 43 H 1.09004 * 109.47073 * 59.99431 * 18 16 15 44 44 H 1.09000 * 110.14283 * 212.43029 * 22 21 19 45 45 H 1.08999 * 110.21475 * 90.70816 * 22 21 19 46 46 H 1.07998 * 120.04193 * 0.02562 * 24 23 22 47 47 H 1.07995 * 119.97469 * 179.97438 * 25 24 23 48 48 H 1.07998 * 119.97792 * 180.02562 * 26 25 24 49 49 H 1.07996 * 120.04403 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.4424 -1.1851 6 1 5.1021 0.8719 -1.2817 7 6 3.7124 2.1753 -2.2628 8 7 2.8822 3.1765 -2.0615 9 14 4.2480 1.7407 -3.9988 10 1 5.1777 0.5835 -3.9550 11 1 3.0560 1.3870 -4.8107 12 1 4.9358 2.9058 -4.6109 13 6 4.2370 1.4426 1.2695 14 6 4.6075 0.0063 1.6448 15 7 5.3391 0.0064 2.9141 16 6 5.7697 -1.1557 3.4437 17 8 5.5513 -2.2015 2.8698 18 6 6.5217 -1.1557 4.7497 19 6 6.8923 -2.5918 5.1248 20 1 7.4354 -3.0651 4.3067 21 8 5.7057 -3.3456 5.4340 22 6 5.5191 -3.1759 6.8528 23 6 6.8980 -2.9563 7.4301 24 6 7.4007 -3.0461 8.7118 25 6 8.7373 -2.7814 8.9486 26 6 9.5689 -2.4278 7.9022 27 6 9.0650 -2.3377 6.6174 28 6 7.7316 -2.6020 6.3810 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 2.5486 3.6889 -2.8145 37 1 5.1450 2.0366 1.1652 38 1 3.6098 1.8720 2.0508 39 1 3.6996 -0.5877 1.7492 40 1 5.2347 -0.4230 0.8636 41 1 5.5135 0.8429 3.3733 42 1 7.4294 -0.5610 4.6463 43 1 5.8936 -0.7270 5.5306 44 1 5.0706 -4.0718 7.2822 45 1 4.8876 -2.3093 7.0487 46 1 6.7513 -3.3228 9.5291 47 1 9.1317 -2.8511 9.9515 48 1 10.6126 -2.2217 8.0882 49 1 9.7146 -2.0618 5.8000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481152555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:18 Heat of formation + Delta-G solvation = -37.087865 kcal Electronic energy + Delta-G solvation = -27964.311631 eV Core-core repulsion = 24084.820130 eV Total energy + Delta-G solvation = -3879.491501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.19097 -39.21725 -37.57453 -36.43384 -34.31030 -32.67665 -32.38645 -31.61618 -31.32113 -30.35814 -28.00142 -26.59351 -25.53226 -24.44208 -23.29209 -21.86995 -21.44966 -20.86366 -20.30418 -19.78377 -17.34535 -16.91903 -16.77619 -16.56618 -16.03648 -15.73096 -15.35283 -15.07082 -14.77840 -14.34439 -14.16360 -13.99665 -13.86251 -13.49717 -13.38959 -13.17923 -12.98081 -12.88261 -12.60764 -12.53484 -12.18011 -11.93757 -11.60162 -11.54407 -11.31365 -11.16552 -11.13898 -10.85125 -10.78597 -10.57512 -10.24950 -10.23132 -9.96928 -9.79026 -9.64840 -9.45350 -9.25803 -8.91045 -8.61194 -8.47170 -6.60852 -5.80704 -3.40053 0.85301 0.95399 2.91812 3.25281 3.35261 3.42895 3.44702 3.49208 3.75309 3.91696 4.30875 4.48582 4.55355 4.64792 4.67670 4.91782 5.00381 5.06196 5.15396 5.19123 5.20980 5.28659 5.39192 5.50306 5.54376 5.62908 5.71275 5.83642 5.88357 5.94563 5.98518 6.04306 6.06213 6.08422 6.25106 6.33211 6.49895 6.54958 6.60496 6.65967 6.70859 6.72595 6.89821 6.95257 7.03302 7.30121 7.74246 7.82183 7.83096 8.49482 8.55178 9.17491 9.78591 10.36099 11.19302 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002166 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.964301 B =12921.778993 C =13674.612191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.147 3.853 4 N -0.580 5.580 5 C -0.262 4.262 6 H 0.061 0.939 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.140 3.860 14 C 0.096 3.904 15 N -0.727 5.727 16 C 0.509 3.491 17 O -0.532 6.532 18 C -0.156 4.156 19 C 0.138 3.862 20 H 0.113 0.887 21 O -0.333 6.333 22 C 0.081 3.919 23 C -0.127 4.127 24 C -0.096 4.096 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.091 4.091 28 C -0.123 4.123 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.094 0.906 35 H 0.021 0.979 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.395 0.605 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.076 0.924 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.128 0.872 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.971 -8.141 22.609 25.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.183 4.183 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.078 0.922 7 C -0.186 4.186 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.012 3.988 14 C -0.029 4.029 15 N -0.378 5.378 16 C 0.294 3.706 17 O -0.408 6.408 18 C -0.196 4.196 19 C 0.080 3.920 20 H 0.130 0.870 21 O -0.250 6.250 22 C 0.004 3.996 23 C -0.127 4.127 24 C -0.114 4.114 25 C -0.134 4.134 26 C -0.135 4.135 27 C -0.109 4.109 28 C -0.123 4.123 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.228 0.772 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.094 0.906 46 H 0.143 0.857 47 H 0.145 0.855 48 H 0.146 0.854 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.572 -8.872 21.872 25.111 hybrid contribution 0.429 0.355 -0.474 0.732 sum 9.001 -8.517 21.397 24.727 Atomic orbital electron populations 1.21698 0.97587 0.99994 1.00993 1.22175 0.93690 1.01569 1.00832 1.21014 0.83156 0.92336 1.01411 1.43680 1.00974 1.85080 1.00214 1.19034 1.08466 1.23148 0.88472 0.92182 1.25172 0.99541 0.94726 0.99182 1.70013 1.35177 1.17564 1.30057 0.86340 0.78177 0.78077 0.84876 1.19979 1.21354 1.21635 1.20961 0.96536 0.91698 0.89625 1.22408 0.95565 1.01822 0.83128 1.46112 1.57957 1.08475 1.25286 1.20305 0.79806 0.84117 0.86332 1.90733 1.56551 1.31242 1.62250 1.22121 1.02226 0.98359 0.96932 1.21020 0.85044 0.91252 0.94695 0.86980 1.89362 1.43955 1.70849 1.20866 1.21863 0.92868 1.02486 0.82346 1.21144 0.96666 1.00516 0.94358 1.20414 0.95541 1.00293 0.95193 1.21152 0.93400 0.99465 0.99336 1.21153 1.00038 0.99902 0.92401 1.20474 0.93465 0.99544 0.97380 1.21037 0.94708 1.00624 0.95979 0.93695 0.93112 0.94122 0.93918 0.92424 0.88810 0.96029 0.93579 0.93281 0.94226 0.92141 0.91779 0.77189 0.87872 0.88706 0.88465 0.90600 0.85722 0.85509 0.85424 0.85503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.91 37.15 0.37 -2.15 16 2 C -0.14 -2.95 6.26 -26.73 -0.17 -3.11 16 3 C 0.15 3.41 5.33 -4.04 -0.02 3.39 16 4 N -0.58 -14.11 2.43 -173.24 -0.42 -14.53 16 5 C -0.26 -7.04 9.45 -15.06 -0.14 -7.19 16 6 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -25.15 11.47 55.49 0.64 -24.51 16 9 Si 0.90 21.53 29.60 -169.99 -5.03 16.50 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.14 2.80 5.83 -4.05 -0.02 2.78 16 14 C 0.10 1.80 5.97 -4.04 -0.02 1.78 16 15 N -0.73 -10.73 5.56 -60.29 -0.33 -11.06 16 16 C 0.51 7.80 7.74 -10.98 -0.08 7.72 16 17 O -0.53 -10.58 15.54 -5.11 -0.08 -10.66 16 18 C -0.16 -1.68 5.37 -27.89 -0.15 -1.83 16 19 C 0.14 1.63 2.92 -27.70 -0.08 1.55 16 20 H 0.11 1.43 7.95 -51.93 -0.41 1.01 16 21 O -0.33 -4.59 10.85 -45.90 -0.50 -5.09 16 22 C 0.08 0.80 7.38 36.20 0.27 1.07 16 23 C -0.13 -1.19 6.32 -104.40 -0.66 -1.85 16 24 C -0.10 -0.73 10.04 -39.66 -0.40 -1.13 16 25 C -0.12 -0.78 10.05 -39.55 -0.40 -1.18 16 26 C -0.12 -0.82 10.05 -39.55 -0.40 -1.21 16 27 C -0.09 -0.74 10.04 -39.66 -0.40 -1.14 16 28 C -0.12 -1.22 5.63 -104.40 -0.59 -1.81 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.86 6.64 -51.93 -0.34 0.52 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.09 2.48 5.52 -51.93 -0.29 2.19 16 35 H 0.02 0.47 7.86 -51.93 -0.41 0.07 16 36 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 38 H 0.04 0.73 7.83 -51.93 -0.41 0.33 16 39 H 0.06 1.23 6.64 -51.93 -0.34 0.89 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.40 4.54 8.47 -40.82 -0.35 4.19 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 0.89 7.96 -51.93 -0.41 0.47 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 48 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 49 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 400.60 15.07 6.04 6.04 Total: -1.00 -33.01 400.60 -10.68 -43.69 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.01 Total: 3.63 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -2.98 Total: -4.00 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.12 Total: -50.11 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.58 Total: -15.75 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.01 -10.68 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481152555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.604 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds