Wall clock time and date at job start Tue Mar 31 2020 16:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47393 * 2 1 4 4 N 1.46500 * 109.47157 * 179.97438 * 3 2 1 5 5 C 1.36943 * 119.99587 * 90.00557 * 4 3 2 6 6 H 1.07995 * 119.99494 * 217.57702 * 5 4 3 7 7 C 1.38814 * 119.99950 * 37.57046 * 5 4 3 8 8 N 1.31613 * 120.00358 * 21.43963 * 7 5 4 9 9 Si 1.86800 * 119.99672 * 201.43310 * 7 5 4 10 10 H 1.48504 * 109.47575 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46918 * 120.00468 * 9 7 5 12 12 H 1.48494 * 109.47152 * 240.00278 * 9 7 5 13 13 C 1.46489 * 120.00411 * 270.00014 * 4 3 2 14 14 C 1.53002 * 109.47238 * 95.31340 * 13 4 3 15 15 N 1.46503 * 109.47243 * 180.02562 * 14 13 4 16 16 C 1.34781 * 119.99892 * 180.02562 * 15 14 13 17 17 O 1.21278 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.50698 * 119.99908 * 180.02562 * 16 15 14 19 19 C 1.52991 * 109.47011 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.13442 * 54.30435 * 19 18 16 21 21 O 1.43936 * 110.15657 * 292.59813 * 19 18 16 22 22 C 1.44110 * 104.86544 * 269.29914 * 21 19 18 23 23 C 1.51096 * 105.96971 * 331.55005 * 22 21 19 24 24 C 1.37967 * 132.68556 * 197.69675 * 23 22 21 25 25 C 1.38298 * 119.91418 * 180.02562 * 24 23 22 26 26 C 1.38259 * 120.04353 * 359.97438 * 25 24 23 27 27 C 1.38294 * 120.04191 * 0.02562 * 26 25 24 28 28 C 1.37977 * 119.92098 * 359.95790 * 27 26 25 29 29 H 1.09002 * 109.47187 * 299.99998 * 1 2 3 30 30 H 1.09003 * 109.47085 * 59.99730 * 1 2 3 31 31 H 1.09005 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47085 * 120.00270 * 2 1 3 33 33 H 1.09002 * 109.47187 * 240.00002 * 2 1 3 34 34 H 1.08994 * 109.47039 * 300.00185 * 3 2 1 35 35 H 1.09002 * 109.46952 * 59.99859 * 3 2 1 36 36 H 0.96995 * 120.00329 * 179.97438 * 8 7 5 37 37 H 1.08999 * 109.47507 * 215.31145 * 13 4 3 38 38 H 1.09005 * 109.47215 * 335.31371 * 13 4 3 39 39 H 1.09003 * 109.47143 * 300.00036 * 14 13 4 40 40 H 1.08991 * 109.46919 * 59.99864 * 14 13 4 41 41 H 0.97003 * 119.99945 * 0.02562 * 15 14 13 42 42 H 1.09003 * 109.46864 * 299.99906 * 18 16 15 43 43 H 1.09004 * 109.47073 * 59.99431 * 18 16 15 44 44 H 1.09000 * 110.14283 * 212.43029 * 22 21 19 45 45 H 1.08999 * 110.21475 * 90.70816 * 22 21 19 46 46 H 1.07998 * 120.04193 * 0.02562 * 24 23 22 47 47 H 1.07995 * 119.97469 * 179.97438 * 25 24 23 48 48 H 1.07998 * 119.97792 * 180.02562 * 26 25 24 49 49 H 1.07996 * 120.04403 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1901 1.4424 -1.1851 6 1 5.1021 0.8719 -1.2817 7 6 3.7124 2.1753 -2.2628 8 7 2.8822 3.1765 -2.0615 9 14 4.2480 1.7407 -3.9988 10 1 5.1777 0.5835 -3.9550 11 1 3.0560 1.3870 -4.8107 12 1 4.9358 2.9058 -4.6109 13 6 4.2370 1.4426 1.2695 14 6 4.6075 0.0063 1.6448 15 7 5.3391 0.0064 2.9141 16 6 5.7697 -1.1557 3.4437 17 8 5.5513 -2.2015 2.8698 18 6 6.5217 -1.1557 4.7497 19 6 6.8923 -2.5918 5.1248 20 1 7.4354 -3.0651 4.3067 21 8 5.7057 -3.3456 5.4340 22 6 5.5191 -3.1759 6.8528 23 6 6.8980 -2.9563 7.4301 24 6 7.4007 -3.0461 8.7118 25 6 8.7373 -2.7814 8.9486 26 6 9.5689 -2.4278 7.9022 27 6 9.0650 -2.3377 6.6174 28 6 7.7316 -2.6020 6.3810 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 2.5486 3.6889 -2.8145 37 1 5.1450 2.0366 1.1652 38 1 3.6098 1.8720 2.0508 39 1 3.6996 -0.5877 1.7492 40 1 5.2347 -0.4230 0.8636 41 1 5.5135 0.8429 3.3733 42 1 7.4294 -0.5610 4.6463 43 1 5.8936 -0.7270 5.5306 44 1 5.0706 -4.0718 7.2822 45 1 4.8876 -2.3093 7.0487 46 1 6.7513 -3.3228 9.5291 47 1 9.1317 -2.8511 9.9515 48 1 10.6126 -2.2217 8.0882 49 1 9.7146 -2.0618 5.8000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481152555.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:44:16 Heat of formation + Delta-G solvation = -56.530451 kcal Electronic energy + Delta-G solvation = -27965.154725 eV Core-core repulsion = 24084.820130 eV Total energy + Delta-G solvation = -3880.334594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.96269 -40.44618 -38.39606 -38.13074 -35.81550 -34.19317 -33.57601 -32.99336 -32.26337 -31.23548 -29.46194 -27.47523 -27.40282 -25.51679 -24.62647 -22.66756 -22.46497 -22.20804 -21.86812 -21.14528 -18.75455 -18.22005 -17.75752 -17.46594 -17.19155 -16.82039 -16.50561 -16.43862 -16.06125 -15.88450 -15.54703 -15.09452 -14.87651 -14.75912 -14.62252 -14.42109 -14.21599 -13.98495 -13.79543 -13.46574 -13.28567 -13.21027 -12.90463 -12.86823 -12.78044 -12.73235 -12.49550 -12.31417 -12.19963 -12.04222 -11.77200 -11.76684 -11.57349 -11.32202 -11.05491 -10.92538 -10.53198 -10.01883 -9.84053 -9.55386 -8.60863 -7.85668 -5.49050 0.25996 0.39377 1.42198 1.46609 1.56287 1.69205 2.17502 2.50867 2.74008 2.95034 3.20132 3.21903 3.56276 3.68747 3.78021 3.97996 4.07747 4.17732 4.21377 4.23580 4.32752 4.35052 4.40317 4.44645 4.51520 4.56214 4.60095 4.65396 4.68765 4.71195 4.83855 4.88418 4.93007 5.06147 5.09685 5.11297 5.19884 5.27431 5.35881 5.41896 5.45080 5.48945 5.54875 5.57068 5.67075 5.80354 5.86129 6.00686 6.45624 6.62766 7.15130 7.33359 7.82579 8.34163 9.10415 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002166 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.964301 B =12921.778993 C =13674.612191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.148 3.852 4 N -0.598 5.598 5 C -0.268 4.268 6 H 0.050 0.950 7 C -0.030 4.030 8 N -0.912 5.912 9 Si 0.952 3.048 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.286 1.286 13 C 0.145 3.855 14 C 0.119 3.881 15 N -0.715 5.715 16 C 0.507 3.493 17 O -0.582 6.582 18 C -0.141 4.141 19 C 0.135 3.865 20 H 0.090 0.910 21 O -0.371 6.371 22 C 0.076 3.924 23 C -0.139 4.139 24 C -0.101 4.101 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.099 4.099 28 C -0.139 4.139 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.032 0.968 36 H 0.253 0.747 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.043 0.957 40 H 0.032 0.968 41 H 0.415 0.585 42 H 0.134 0.866 43 H 0.116 0.884 44 H 0.107 0.893 45 H 0.086 0.914 46 H 0.145 0.855 47 H 0.154 0.846 48 H 0.153 0.847 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.943 -7.943 25.256 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.173 4.173 3 C 0.022 3.978 4 N -0.318 5.318 5 C -0.399 4.399 6 H 0.067 0.933 7 C -0.228 4.228 8 N -0.555 5.555 9 Si 0.780 3.220 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.213 1.213 13 C 0.018 3.982 14 C -0.008 4.008 15 N -0.368 5.368 16 C 0.294 3.706 17 O -0.462 6.462 18 C -0.181 4.181 19 C 0.077 3.923 20 H 0.108 0.892 21 O -0.289 6.289 22 C 0.000 4.000 23 C -0.140 4.140 24 C -0.119 4.119 25 C -0.132 4.132 26 C -0.136 4.136 27 C -0.117 4.117 28 C -0.140 4.140 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.251 0.749 42 H 0.152 0.848 43 H 0.134 0.866 44 H 0.125 0.875 45 H 0.104 0.896 46 H 0.163 0.837 47 H 0.172 0.828 48 H 0.170 0.830 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.562 -8.652 24.563 27.742 hybrid contribution 0.173 0.252 -1.190 1.228 sum 9.734 -8.400 23.373 26.676 Atomic orbital electron populations 1.21636 0.94800 1.01533 1.01599 1.22012 0.96105 0.99452 0.99682 1.20946 0.82830 0.93614 1.00378 1.43890 1.01610 1.85365 1.00959 1.19140 1.08231 1.22507 0.89988 0.93275 1.25775 1.00083 0.94834 1.02089 1.70109 1.36347 1.18394 1.30688 0.85467 0.77642 0.77743 0.81120 1.19851 1.21421 1.21267 1.20986 0.96474 0.92282 0.88486 1.21837 0.94557 1.00285 0.84148 1.45913 1.57274 1.09655 1.23946 1.21125 0.79030 0.83085 0.87314 1.90714 1.58448 1.33084 1.63946 1.22094 1.03059 0.98642 0.94269 1.20976 0.84938 0.91186 0.95195 0.89243 1.89310 1.44813 1.71604 1.23217 1.22021 0.93806 1.03438 0.80715 1.21191 0.96150 1.01495 0.95125 1.20723 0.96408 0.99781 0.94956 1.21548 0.92961 0.98033 1.00644 1.21507 1.01354 0.98941 0.91796 1.20724 0.92909 0.99443 0.98587 1.20913 0.95500 1.02615 0.94934 0.92008 0.93584 0.92121 0.93625 0.94942 0.91833 0.94918 0.93758 0.93308 0.92058 0.93844 0.94913 0.74868 0.84842 0.86625 0.87542 0.89624 0.83727 0.82799 0.82969 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 9.91 71.98 0.71 -3.90 16 2 C -0.13 -5.49 6.26 30.59 0.19 -5.30 16 3 C 0.15 6.94 5.33 86.38 0.46 7.40 16 4 N -0.60 -29.45 2.43 -702.01 -1.71 -31.16 16 5 C -0.27 -14.73 9.45 84.03 0.79 -13.94 16 6 H 0.05 2.76 7.92 -2.91 -0.02 2.73 16 7 C -0.03 -1.65 4.95 84.86 0.42 -1.23 16 8 N -0.91 -52.52 11.47 21.65 0.25 -52.27 16 9 Si 0.95 44.97 29.60 68.60 2.03 47.00 16 10 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 13 C 0.14 5.76 5.83 86.38 0.50 6.26 16 14 C 0.12 4.50 5.97 86.38 0.52 5.02 16 15 N -0.71 -20.61 5.56 -463.06 -2.57 -23.18 16 16 C 0.51 15.47 7.74 87.66 0.68 16.15 16 17 O -0.58 -24.01 15.54 7.17 0.11 -23.90 16 18 C -0.14 -2.86 5.37 29.84 0.16 -2.70 16 19 C 0.14 3.21 2.92 29.97 0.09 3.30 16 20 H 0.09 2.42 7.95 -2.39 -0.02 2.40 16 21 O -0.37 -10.48 10.85 -138.78 -1.51 -11.99 16 22 C 0.08 1.46 7.38 71.36 0.53 1.99 16 23 C -0.14 -2.42 6.32 -19.72 -0.12 -2.55 16 24 C -0.10 -1.27 10.04 22.22 0.22 -1.05 16 25 C -0.11 -1.16 10.05 22.29 0.22 -0.94 16 26 C -0.12 -1.29 10.05 22.29 0.22 -1.07 16 27 C -0.10 -1.43 10.04 22.22 0.22 -1.21 16 28 C -0.14 -2.61 5.63 -19.72 -0.11 -2.72 16 29 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.05 1.84 6.64 -2.39 -0.02 1.82 16 33 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 3.42 5.52 -2.39 -0.01 3.41 16 35 H 0.03 1.42 7.86 -2.39 -0.02 1.41 16 36 H 0.25 14.03 8.31 -92.71 -0.77 13.25 16 37 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 38 H 0.06 2.18 7.83 -2.38 -0.02 2.16 16 39 H 0.04 1.80 6.64 -2.39 -0.02 1.79 16 40 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.41 8.72 8.47 -92.71 -0.79 7.93 16 42 H 0.13 1.89 8.14 -2.39 -0.02 1.88 16 43 H 0.12 1.91 7.96 -2.38 -0.02 1.89 16 44 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.14 1.16 8.06 -2.91 -0.02 1.13 16 47 H 0.15 0.70 8.06 -2.91 -0.02 0.67 16 48 H 0.15 0.86 8.06 -2.91 -0.02 0.83 16 49 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -73.97 400.60 2.47 -71.50 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.15 Total: 20.47 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 5.71 Total: 3.52 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -4.03 Total: -106.61 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -1.39 Total: -35.89 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -73.97 2.47 -71.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481152555.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.974 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds