Wall clock time and date at job start Tue Mar 31 2020 16:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46547 * 2 1 4 4 N 1.46497 * 109.47304 * 119.99154 * 2 1 3 5 5 C 1.36940 * 119.99674 * 113.76881 * 4 2 1 6 6 H 1.07998 * 119.99822 * 204.95166 * 5 4 2 7 7 C 1.38810 * 120.00111 * 24.95225 * 5 4 2 8 8 N 1.31613 * 119.99932 * 215.05373 * 7 5 4 9 9 Si 1.86803 * 119.99683 * 35.05703 * 7 5 4 10 10 H 1.48497 * 109.47080 * 265.60063 * 9 7 5 11 11 H 1.48501 * 109.46707 * 145.60233 * 9 7 5 12 12 H 1.48493 * 109.47163 * 25.60338 * 9 7 5 13 13 C 1.46502 * 120.00281 * 293.77248 * 4 2 1 14 14 C 1.52998 * 109.47205 * 269.99334 * 13 4 2 15 15 C 1.52994 * 109.47157 * 179.97438 * 14 13 4 16 16 N 1.46504 * 109.47383 * 180.02562 * 15 14 13 17 17 C 1.34770 * 120.00599 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99477 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00629 * 180.02562 * 17 16 15 20 20 H 1.08997 * 110.66481 * 58.21462 * 19 17 16 21 21 C 1.54711 * 110.74865 * 295.00530 * 19 17 16 22 22 C 1.51646 * 101.92614 * 266.95655 * 21 19 17 23 23 C 1.37750 * 132.17938 * 164.59867 * 22 21 19 24 24 C 1.38338 * 119.97790 * 180.35482 * 23 22 21 25 25 C 1.38290 * 119.76986 * 0.03618 * 24 23 22 26 26 C 1.37928 * 120.35234 * 359.78401 * 25 24 23 27 27 C 1.38881 * 107.03840 * 344.61970 * 22 21 19 28 28 O 1.36132 * 111.23691 * 358.91898 * 27 22 21 29 29 H 1.08999 * 109.47630 * 300.00232 * 1 2 3 30 30 H 1.08997 * 109.47480 * 60.00837 * 1 2 3 31 31 H 1.09003 * 109.46575 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47630 * 239.99768 * 2 1 3 33 33 H 1.09002 * 109.46798 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47247 * 299.99565 * 3 2 1 35 35 H 1.08999 * 109.47345 * 59.99593 * 3 2 1 36 36 H 0.97007 * 119.99667 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46731 * 29.99845 * 13 4 2 38 38 H 1.09004 * 109.46917 * 149.99780 * 13 4 2 39 39 H 1.08999 * 109.47146 * 300.00454 * 14 13 4 40 40 H 1.09008 * 109.46717 * 59.99877 * 14 13 4 41 41 H 1.08999 * 109.47668 * 300.00386 * 15 14 13 42 42 H 1.08998 * 109.47373 * 60.00339 * 15 14 13 43 43 H 0.97001 * 119.99424 * 0.02562 * 16 15 14 44 44 H 1.09007 * 110.93895 * 25.11514 * 21 19 17 45 45 H 1.09001 * 110.94229 * 148.79986 * 21 19 17 46 46 H 1.08000 * 120.00667 * 0.35350 * 23 22 21 47 47 H 1.08001 * 120.11577 * 180.02562 * 24 23 22 48 48 H 1.08003 * 119.82577 * 179.81212 * 25 24 23 49 49 H 1.07998 * 119.88472 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 2.0183 -0.6904 1.1962 5 6 2.6972 -1.8735 1.0747 6 1 2.7082 -2.5764 1.8945 7 6 3.3713 -2.1692 -0.1022 8 7 3.4240 -3.4105 -0.5362 9 14 4.2036 -0.8051 -1.0697 10 1 3.2811 -0.3119 -2.1236 11 1 5.4409 -1.3302 -1.7011 12 1 4.5506 0.3108 -0.1537 13 6 1.7804 -0.1153 2.5225 14 6 2.9422 0.8084 2.8938 15 6 2.6934 1.4095 4.2785 16 7 3.8055 2.2945 4.6338 17 6 3.8023 2.9390 5.8173 18 8 2.8788 2.7861 6.5886 19 6 4.9460 3.8498 6.1826 20 1 5.0596 4.6408 5.4414 21 6 6.2598 3.0466 6.3326 22 6 6.2723 2.7409 7.8179 23 6 6.9969 1.8439 8.5715 24 6 6.7974 1.7697 9.9384 25 6 5.8690 2.5975 10.5428 26 6 5.1450 3.4990 9.7907 27 6 5.3426 3.5827 8.4145 28 8 4.7584 4.4013 7.4970 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4427 0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6764 1.9565 0.8899 36 1 3.8953 -3.6172 -1.3585 37 1 0.8520 0.4557 2.5096 38 1 1.7041 -0.9165 3.2576 39 1 3.8706 0.2374 2.9065 40 1 3.0186 1.6096 2.1586 41 1 1.7651 1.9806 4.2653 42 1 2.6167 0.6086 5.0138 43 1 4.5439 2.4170 4.0168 44 1 6.2242 2.1284 5.7462 45 1 7.1212 3.6529 6.0525 46 1 7.7204 1.1989 8.0953 47 1 7.3645 1.0675 10.5315 48 1 5.7103 2.5382 11.6095 49 1 4.4222 4.1421 10.2706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481351902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:25 Heat of formation + Delta-G solvation = -14.680188 kcal Electronic energy + Delta-G solvation = -28482.800916 eV Core-core repulsion = 24604.281085 eV Total energy + Delta-G solvation = -3878.519831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.73510 -39.32182 -37.60456 -37.28602 -35.19814 -33.22470 -32.20338 -31.98927 -30.30241 -30.16511 -29.21957 -26.60558 -25.95354 -24.43678 -22.91725 -22.55448 -21.90889 -21.27722 -20.69356 -19.47854 -18.09029 -17.25146 -17.17220 -16.99096 -16.09329 -15.74445 -15.51375 -15.29201 -14.96903 -14.44077 -14.27006 -13.77734 -13.68023 -13.50141 -13.45941 -13.32909 -13.15659 -13.06340 -12.87144 -12.24057 -12.11424 -11.98468 -11.89501 -11.79870 -11.70555 -11.56342 -11.40183 -11.08356 -11.05582 -10.85917 -10.50714 -10.17981 -9.97117 -9.93163 -9.67588 -9.39772 -9.16120 -9.08865 -8.50951 -8.38794 -7.08946 -6.07338 -3.26393 1.01681 1.12656 2.37823 2.70849 3.16958 3.30312 3.44445 3.46710 3.49410 4.04402 4.12399 4.45041 4.49815 4.57177 4.78218 4.80436 4.84394 4.95582 5.12428 5.14413 5.19790 5.32967 5.36961 5.38411 5.52679 5.67655 5.74042 5.74406 5.90233 5.97739 6.05147 6.06207 6.11732 6.12983 6.18294 6.21890 6.26456 6.29837 6.38227 6.43083 6.45533 6.59654 6.66938 6.83972 6.88850 6.96339 7.06119 7.37126 7.94098 8.05839 8.27307 8.94124 9.70433 10.08067 11.07588 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.002480 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.483139 B =11286.803334 C =11833.732202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 C -0.178 4.178 4 N -0.594 5.594 5 C -0.269 4.269 6 H 0.083 0.917 7 C 0.034 3.966 8 N -0.884 5.884 9 Si 0.852 3.148 10 H -0.286 1.286 11 H -0.304 1.304 12 H -0.266 1.266 13 C 0.155 3.845 14 C -0.160 4.160 15 C 0.120 3.880 16 N -0.721 5.721 17 C 0.494 3.506 18 O -0.522 6.522 19 C 0.063 3.937 20 H 0.142 0.858 21 C -0.100 4.100 22 C -0.176 4.176 23 C -0.068 4.068 24 C -0.149 4.149 25 C -0.086 4.086 26 C -0.133 4.133 27 C 0.111 3.889 28 O -0.275 6.275 29 H 0.045 0.955 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.262 0.738 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.401 0.599 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.131 0.869 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.369 15.078 14.945 22.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.044 3.956 3 C -0.236 4.236 4 N -0.315 5.315 5 C -0.396 4.396 6 H 0.101 0.899 7 C -0.167 4.167 8 N -0.524 5.524 9 Si 0.681 3.319 10 H -0.214 1.214 11 H -0.233 1.233 12 H -0.192 1.192 13 C 0.028 3.972 14 C -0.201 4.201 15 C -0.003 4.003 16 N -0.374 5.374 17 C 0.277 3.723 18 O -0.398 6.398 19 C 0.003 3.997 20 H 0.160 0.840 21 C -0.138 4.138 22 C -0.176 4.176 23 C -0.086 4.086 24 C -0.167 4.167 25 C -0.104 4.104 26 C -0.152 4.152 27 C 0.066 3.934 28 O -0.187 6.187 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.235 0.765 44 H 0.117 0.883 45 H 0.122 0.878 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.149 0.851 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.595 15.001 15.424 22.231 hybrid contribution 1.086 0.750 -1.163 1.759 sum 6.681 15.751 14.261 22.274 Atomic orbital electron populations 1.22228 0.98158 1.01554 0.99743 1.20656 0.92324 0.91302 0.91304 1.22655 1.01798 0.98656 1.00528 1.44292 1.63314 1.24138 0.99712 1.18814 1.26597 0.92009 1.02199 0.89946 1.25179 0.99425 0.95219 0.96833 1.70078 1.41844 1.19035 1.21487 0.87430 0.80074 0.84318 0.80100 1.21416 1.23256 1.19161 1.20694 0.93891 0.94598 0.88009 1.22766 1.03405 1.00518 0.93402 1.21522 0.88512 0.92570 0.97708 1.46091 1.25499 1.47105 1.18672 1.20803 0.87982 0.81245 0.82222 1.90745 1.36218 1.62996 1.49794 1.23342 0.93229 0.97161 0.85992 0.84018 1.21796 0.96687 1.01512 0.93765 1.20713 1.00339 1.01142 0.95447 1.20319 0.98213 0.96559 0.93519 1.21048 1.00348 1.00995 0.94341 1.20895 0.95134 0.94535 0.99790 1.20283 1.02691 1.02011 0.90202 1.19571 0.91822 0.90697 0.91306 1.86925 1.74946 1.42539 1.14272 0.93621 0.93957 0.92395 0.90371 0.92341 0.93588 0.92737 0.92804 0.93725 0.92834 0.91034 0.91508 0.91742 0.91517 0.76500 0.88256 0.87794 0.85599 0.85375 0.85093 0.85357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.27 37.16 0.34 -2.49 16 2 C 0.15 3.12 2.19 -67.93 -0.15 2.97 16 3 C -0.18 -3.15 7.30 37.16 0.27 -2.88 16 4 N -0.59 -13.13 2.19 -165.66 -0.36 -13.49 16 5 C -0.27 -7.12 9.90 -15.06 -0.15 -7.27 16 6 H 0.08 2.35 8.05 -52.49 -0.42 1.93 16 7 C 0.03 0.94 4.95 -17.43 -0.09 0.85 16 8 N -0.88 -26.16 13.97 55.49 0.78 -25.39 16 9 Si 0.85 20.80 23.97 -169.99 -4.07 16.73 16 10 H -0.29 -6.88 6.59 56.52 0.37 -6.51 16 11 H -0.30 -7.70 7.11 56.52 0.40 -7.29 16 12 H -0.27 -6.16 5.82 56.52 0.33 -5.83 16 13 C 0.16 2.81 4.93 -4.04 -0.02 2.79 16 14 C -0.16 -2.49 5.35 -26.74 -0.14 -2.64 16 15 C 0.12 1.66 5.67 -4.04 -0.02 1.64 16 16 N -0.72 -8.53 5.39 -60.30 -0.33 -8.85 16 17 C 0.49 6.61 7.07 -10.99 -0.08 6.53 16 18 O -0.52 -9.36 16.53 -13.51 -0.22 -9.59 16 19 C 0.06 0.65 4.11 -26.99 -0.11 0.54 16 20 H 0.14 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.10 -0.87 6.64 -26.52 -0.18 -1.04 16 22 C -0.18 -1.93 6.26 -104.10 -0.65 -2.58 16 23 C -0.07 -0.66 10.03 -39.72 -0.40 -1.06 16 24 C -0.15 -1.32 10.07 -39.53 -0.40 -1.72 16 25 C -0.09 -0.78 10.02 -39.68 -0.40 -1.18 16 26 C -0.13 -1.48 10.06 -39.30 -0.40 -1.87 16 27 C 0.11 1.40 6.90 -38.95 -0.27 1.13 16 28 O -0.27 -3.60 10.41 -39.22 -0.41 -4.01 16 29 H 0.04 0.74 6.93 -51.93 -0.36 0.38 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 1.85 4.07 -51.93 -0.21 1.64 16 33 H 0.06 1.11 5.08 -51.93 -0.26 0.85 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.86 6.39 -51.93 -0.33 0.53 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.04 0.74 6.72 -51.93 -0.35 0.39 16 38 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.03 5.40 -51.92 -0.28 0.75 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.40 3.69 8.47 -40.82 -0.35 3.34 16 44 H 0.10 0.80 7.78 -51.92 -0.40 0.39 16 45 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 48 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 49 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 385.30 15.07 5.81 5.81 Total: -1.00 -33.52 385.30 -9.34 -42.86 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -7.70 Total: 4.20 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.83 Total: -8.28 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: 0.09 Total: -47.73 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.63 Total: -13.59 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.07 Total: 16.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.52 -9.34 -42.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481351902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.180 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds