Wall clock time and date at job start Tue Mar 31 2020 16:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.46547 * 2 1 4 4 N 1.46497 * 109.47304 * 119.99154 * 2 1 3 5 5 C 1.36940 * 119.99674 * 113.76881 * 4 2 1 6 6 H 1.07998 * 119.99822 * 204.95166 * 5 4 2 7 7 C 1.38810 * 120.00111 * 24.95225 * 5 4 2 8 8 N 1.31613 * 119.99932 * 215.05373 * 7 5 4 9 9 Si 1.86803 * 119.99683 * 35.05703 * 7 5 4 10 10 H 1.48497 * 109.47080 * 265.60063 * 9 7 5 11 11 H 1.48501 * 109.46707 * 145.60233 * 9 7 5 12 12 H 1.48493 * 109.47163 * 25.60338 * 9 7 5 13 13 C 1.46502 * 120.00281 * 293.77248 * 4 2 1 14 14 C 1.52998 * 109.47205 * 269.99334 * 13 4 2 15 15 C 1.52994 * 109.47157 * 179.97438 * 14 13 4 16 16 N 1.46504 * 109.47383 * 180.02562 * 15 14 13 17 17 C 1.34770 * 120.00599 * 179.97438 * 16 15 14 18 18 O 1.21289 * 119.99477 * 0.02562 * 17 16 15 19 19 C 1.50692 * 120.00629 * 180.02562 * 17 16 15 20 20 H 1.08997 * 110.66481 * 58.21462 * 19 17 16 21 21 C 1.54711 * 110.74865 * 295.00530 * 19 17 16 22 22 C 1.51646 * 101.92614 * 266.95655 * 21 19 17 23 23 C 1.37750 * 132.17938 * 164.59867 * 22 21 19 24 24 C 1.38338 * 119.97790 * 180.35482 * 23 22 21 25 25 C 1.38290 * 119.76986 * 0.03618 * 24 23 22 26 26 C 1.37928 * 120.35234 * 359.78401 * 25 24 23 27 27 C 1.38881 * 107.03840 * 344.61970 * 22 21 19 28 28 O 1.36132 * 111.23691 * 358.91898 * 27 22 21 29 29 H 1.08999 * 109.47630 * 300.00232 * 1 2 3 30 30 H 1.08997 * 109.47480 * 60.00837 * 1 2 3 31 31 H 1.09003 * 109.46575 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47630 * 239.99768 * 2 1 3 33 33 H 1.09002 * 109.46798 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47247 * 299.99565 * 3 2 1 35 35 H 1.08999 * 109.47345 * 59.99593 * 3 2 1 36 36 H 0.97007 * 119.99667 * 180.02562 * 8 7 5 37 37 H 1.09000 * 109.46731 * 29.99845 * 13 4 2 38 38 H 1.09004 * 109.46917 * 149.99780 * 13 4 2 39 39 H 1.08999 * 109.47146 * 300.00454 * 14 13 4 40 40 H 1.09008 * 109.46717 * 59.99877 * 14 13 4 41 41 H 1.08999 * 109.47668 * 300.00386 * 15 14 13 42 42 H 1.08998 * 109.47373 * 60.00339 * 15 14 13 43 43 H 0.97001 * 119.99424 * 0.02562 * 16 15 14 44 44 H 1.09007 * 110.93895 * 25.11514 * 21 19 17 45 45 H 1.09001 * 110.94229 * 148.79986 * 21 19 17 46 46 H 1.08000 * 120.00667 * 0.35350 * 23 22 21 47 47 H 1.08001 * 120.11577 * 180.02562 * 24 23 22 48 48 H 1.08003 * 119.82577 * 179.81212 * 25 24 23 49 49 H 1.07998 * 119.88472 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 2.0183 -0.6904 1.1962 5 6 2.6972 -1.8735 1.0747 6 1 2.7082 -2.5764 1.8945 7 6 3.3713 -2.1692 -0.1022 8 7 3.4240 -3.4105 -0.5362 9 14 4.2036 -0.8051 -1.0697 10 1 3.2811 -0.3119 -2.1236 11 1 5.4409 -1.3302 -1.7011 12 1 4.5506 0.3108 -0.1537 13 6 1.7804 -0.1153 2.5225 14 6 2.9422 0.8084 2.8938 15 6 2.6934 1.4095 4.2785 16 7 3.8055 2.2945 4.6338 17 6 3.8023 2.9390 5.8173 18 8 2.8788 2.7861 6.5886 19 6 4.9460 3.8498 6.1826 20 1 5.0596 4.6408 5.4414 21 6 6.2598 3.0466 6.3326 22 6 6.2723 2.7409 7.8179 23 6 6.9969 1.8439 8.5715 24 6 6.7974 1.7697 9.9384 25 6 5.8690 2.5975 10.5428 26 6 5.1450 3.4990 9.7907 27 6 5.3426 3.5827 8.4145 28 8 4.7584 4.4013 7.4970 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4427 0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6764 1.9565 0.8899 36 1 3.8953 -3.6172 -1.3585 37 1 0.8520 0.4557 2.5096 38 1 1.7041 -0.9165 3.2576 39 1 3.8706 0.2374 2.9065 40 1 3.0186 1.6096 2.1586 41 1 1.7651 1.9806 4.2653 42 1 2.6167 0.6086 5.0138 43 1 4.5439 2.4170 4.0168 44 1 6.2242 2.1284 5.7462 45 1 7.1212 3.6529 6.0525 46 1 7.7204 1.1989 8.0953 47 1 7.3645 1.0675 10.5315 48 1 5.7103 2.5382 11.6095 49 1 4.4222 4.1421 10.2706 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481351902.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:24 Heat of formation + Delta-G solvation = -35.858287 kcal Electronic energy + Delta-G solvation = -28483.719268 eV Core-core repulsion = 24604.281085 eV Total energy + Delta-G solvation = -3879.438182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.54661 -40.34289 -39.00279 -38.26414 -36.41589 -34.23595 -34.04235 -33.20904 -31.49690 -31.03647 -30.33169 -28.01562 -27.33723 -25.53158 -24.37423 -23.42247 -22.70210 -22.52730 -21.78184 -21.07205 -19.02282 -18.80823 -18.02960 -17.99248 -17.33225 -16.93232 -16.76962 -16.43607 -16.00262 -15.72630 -15.31817 -15.08425 -14.94313 -14.89615 -14.72930 -14.52667 -14.27655 -14.09359 -13.70576 -13.66116 -13.33295 -13.25907 -13.06514 -12.89410 -12.80190 -12.71709 -12.62589 -12.59463 -12.46698 -12.13091 -11.86538 -11.79201 -11.52349 -11.35888 -11.16733 -10.96697 -10.52489 -10.19295 -9.87502 -9.17455 -8.94561 -8.18242 -5.32997 0.28854 0.36542 1.35749 1.39057 1.44720 1.54032 1.83644 2.30606 2.47660 2.75861 2.97115 3.33279 3.36683 3.43820 3.59485 3.88098 4.09422 4.14185 4.14501 4.20978 4.23169 4.28462 4.39526 4.48645 4.52950 4.58480 4.59875 4.62629 4.65412 4.72843 4.81248 4.85516 4.92279 4.93297 5.03811 5.05332 5.16834 5.28675 5.31685 5.33409 5.36925 5.40026 5.51447 5.53194 5.58940 5.59865 5.93898 6.13135 6.16622 6.42874 7.00839 7.08791 7.74231 8.11235 9.00749 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017578 B = 0.002480 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.483139 B =11286.803334 C =11833.732202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.139 3.861 3 C -0.170 4.170 4 N -0.604 5.604 5 C -0.254 4.254 6 H 0.046 0.954 7 C -0.024 4.024 8 N -0.939 5.939 9 Si 0.917 3.083 10 H -0.279 1.279 11 H -0.319 1.319 12 H -0.241 1.241 13 C 0.151 3.849 14 C -0.141 4.141 15 C 0.131 3.869 16 N -0.708 5.708 17 C 0.492 3.508 18 O -0.575 6.575 19 C 0.063 3.937 20 H 0.181 0.819 21 C -0.093 4.093 22 C -0.190 4.190 23 C -0.080 4.080 24 C -0.150 4.150 25 C -0.089 4.089 26 C -0.155 4.155 27 C 0.075 3.925 28 O -0.297 6.297 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.259 0.741 37 H 0.068 0.932 38 H 0.039 0.961 39 H 0.055 0.945 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.051 0.949 43 H 0.417 0.583 44 H 0.105 0.895 45 H 0.134 0.866 46 H 0.146 0.854 47 H 0.155 0.845 48 H 0.157 0.843 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.307 17.852 14.971 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 C -0.228 4.228 4 N -0.326 5.326 5 C -0.383 4.383 6 H 0.063 0.937 7 C -0.220 4.220 8 N -0.583 5.583 9 Si 0.746 3.254 10 H -0.206 1.206 11 H -0.249 1.249 12 H -0.165 1.165 13 C 0.025 3.975 14 C -0.182 4.182 15 C 0.007 3.993 16 N -0.361 5.361 17 C 0.278 3.722 18 O -0.454 6.454 19 C 0.004 3.996 20 H 0.198 0.802 21 C -0.130 4.130 22 C -0.191 4.191 23 C -0.098 4.098 24 C -0.168 4.168 25 C -0.107 4.107 26 C -0.174 4.174 27 C 0.031 3.969 28 O -0.210 6.210 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.254 0.746 44 H 0.124 0.876 45 H 0.152 0.848 46 H 0.164 0.836 47 H 0.173 0.827 48 H 0.175 0.825 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.546 17.838 15.449 24.489 hybrid contribution 0.696 -0.193 -1.049 1.274 sum 7.242 17.645 14.400 23.899 Atomic orbital electron populations 1.22130 0.96113 1.00751 1.01967 1.20817 0.94000 0.92671 0.89194 1.22548 1.00990 0.96441 1.02853 1.44348 1.62954 1.23521 1.01774 1.18718 1.25887 0.93002 1.00720 0.93652 1.25725 1.00614 0.97109 0.98556 1.70191 1.44008 1.21461 1.22669 0.86396 0.78015 0.81824 0.79193 1.20612 1.24890 1.16485 1.20800 0.95977 0.94905 0.85775 1.22453 1.01188 0.99937 0.94578 1.21238 0.89414 0.92501 0.96175 1.45910 1.25365 1.46118 1.18729 1.21450 0.88147 0.80991 0.81612 1.90720 1.38466 1.64866 1.51358 1.23613 0.92325 0.97815 0.85853 0.80214 1.21885 0.96691 1.02013 0.92383 1.21095 1.00131 1.01030 0.96850 1.20692 0.98475 0.96542 0.94060 1.21466 0.99963 1.00881 0.94503 1.21253 0.94601 0.93768 1.01051 1.20599 1.03465 1.02922 0.90388 1.19945 0.93146 0.91911 0.91944 1.86884 1.75526 1.43246 1.15375 0.91646 0.91447 0.94772 0.93690 0.93442 0.91298 0.90456 0.93168 0.91407 0.94228 0.92609 0.90266 0.91435 0.93025 0.74599 0.87619 0.84768 0.83621 0.82743 0.82528 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.03 9.27 71.98 0.67 -4.36 16 2 C 0.14 5.44 2.19 44.99 0.10 5.54 16 3 C -0.17 -5.29 7.30 71.98 0.53 -4.77 16 4 N -0.60 -26.18 2.19 -678.03 -1.49 -27.66 16 5 C -0.25 -13.75 9.90 84.03 0.83 -12.92 16 6 H 0.05 2.73 8.05 -2.91 -0.02 2.70 16 7 C -0.02 -1.34 4.95 84.86 0.42 -0.92 16 8 N -0.94 -57.73 13.97 21.65 0.30 -57.42 16 9 Si 0.92 43.28 23.97 68.60 1.64 44.92 16 10 H -0.28 -12.71 6.59 99.48 0.66 -12.05 16 11 H -0.32 -15.74 7.11 99.48 0.71 -15.03 16 12 H -0.24 -10.24 5.82 99.48 0.58 -9.66 16 13 C 0.15 5.26 4.93 86.38 0.43 5.69 16 14 C -0.14 -4.07 5.35 30.59 0.16 -3.91 16 15 C 0.13 3.38 5.67 86.38 0.49 3.87 16 16 N -0.71 -15.13 5.39 -463.07 -2.50 -17.63 16 17 C 0.49 12.50 7.07 87.66 0.62 13.12 16 18 O -0.58 -20.63 16.53 15.17 0.25 -20.38 16 19 C 0.06 1.17 4.11 30.43 0.13 1.30 16 20 H 0.18 1.81 8.14 -2.39 -0.02 1.79 16 21 C -0.09 -1.36 6.64 30.73 0.20 -1.16 16 22 C -0.19 -3.93 6.26 -19.52 -0.12 -4.05 16 23 C -0.08 -1.41 10.03 22.18 0.22 -1.18 16 24 C -0.15 -2.38 10.07 22.31 0.22 -2.16 16 25 C -0.09 -1.52 10.02 22.21 0.22 -1.30 16 26 C -0.16 -3.46 10.06 22.45 0.23 -3.23 16 27 C 0.08 1.87 6.90 22.68 0.16 2.03 16 28 O -0.30 -7.65 10.41 -76.83 -0.80 -8.45 16 29 H 0.06 1.91 6.93 -2.39 -0.02 1.89 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.05 2.07 4.07 -2.39 -0.01 2.06 16 33 H 0.05 1.58 5.08 -2.39 -0.01 1.57 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.08 2.04 6.39 -2.39 -0.02 2.03 16 36 H 0.26 15.21 8.31 -92.70 -0.77 14.44 16 37 H 0.07 2.05 6.72 -2.39 -0.02 2.03 16 38 H 0.04 1.47 8.04 -2.38 -0.02 1.45 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.08 2.12 5.40 -2.38 -0.01 2.10 16 41 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.42 6.29 8.47 -92.71 -0.79 5.50 16 44 H 0.11 1.40 7.78 -2.38 -0.02 1.38 16 45 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 47 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 48 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 49 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -76.96 385.30 2.91 -74.05 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.01 Total: 20.98 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 5.50 Total: -8.41 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -3.68 Total: -102.72 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.55 Total: -28.83 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.64 Total: 44.92 kcal Total: -76.96 2.91 -74.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481351902.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.196 kcal (2) G-P(sol) polarization free energy of solvation -76.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds