Wall clock time and date at job start Tue Mar 31 2020 16:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46812 * 2 1 4 4 N 1.46497 * 109.47302 * 119.99844 * 2 1 3 5 5 C 1.36940 * 119.99705 * 294.90444 * 4 2 1 6 6 H 1.08005 * 119.99837 * 37.15187 * 5 4 2 7 7 C 1.38806 * 120.00096 * 217.14202 * 5 4 2 8 8 N 1.31621 * 120.00271 * 21.27305 * 7 5 4 9 9 Si 1.86806 * 120.00271 * 201.26695 * 7 5 4 10 10 H 1.48497 * 109.47072 * 60.00184 * 9 7 5 11 11 H 1.48501 * 109.46924 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47090 * 300.00206 * 9 7 5 13 13 C 1.46496 * 120.00162 * 114.90612 * 4 2 1 14 14 C 1.53005 * 109.47105 * 270.00042 * 13 4 2 15 15 C 1.52993 * 109.47166 * 179.97438 * 14 13 4 16 16 N 1.46500 * 109.47434 * 180.02562 * 15 14 13 17 17 C 1.34777 * 120.00425 * 180.02562 * 16 15 14 18 18 O 1.21280 * 119.99805 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.99923 * 179.97438 * 17 16 15 20 20 H 1.08999 * 110.67044 * 304.30508 * 19 17 16 21 21 C 1.54712 * 110.74767 * 67.51766 * 19 17 16 22 22 C 1.51644 * 101.92832 * 143.60122 * 21 19 17 23 23 C 1.37742 * 132.18090 * 164.59830 * 22 21 19 24 24 C 1.38353 * 119.98213 * 180.40711 * 23 22 21 25 25 C 1.38287 * 119.76617 * 359.94371 * 24 23 22 26 26 C 1.37939 * 120.35078 * 359.87947 * 25 24 23 27 27 C 1.38885 * 107.04093 * 344.62721 * 22 21 19 28 28 O 1.36384 * 111.32176 * 359.06943 * 27 22 21 29 29 H 1.08990 * 109.47270 * 303.30913 * 1 2 3 30 30 H 1.09001 * 109.47131 * 63.31624 * 1 2 3 31 31 H 1.09003 * 109.46507 * 183.31009 * 1 2 3 32 32 H 1.09003 * 109.47484 * 240.00209 * 2 1 3 33 33 H 1.08999 * 109.47107 * 181.62063 * 3 2 1 34 34 H 1.09008 * 109.46977 * 301.61776 * 3 2 1 35 35 H 1.09001 * 109.47323 * 61.61997 * 3 2 1 36 36 H 0.96993 * 120.00851 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47019 * 150.00225 * 13 4 2 38 38 H 1.08995 * 109.47190 * 29.99877 * 13 4 2 39 39 H 1.09009 * 109.46916 * 300.00218 * 14 13 4 40 40 H 1.09003 * 109.46987 * 59.99729 * 14 13 4 41 41 H 1.09000 * 109.47617 * 300.00100 * 15 14 13 42 42 H 1.09003 * 109.47350 * 59.99999 * 15 14 13 43 43 H 0.97005 * 119.99392 * 359.97438 * 16 15 14 44 44 H 1.08998 * 110.94111 * 261.76411 * 21 19 17 45 45 H 1.09004 * 110.93943 * 25.45193 * 21 19 17 46 46 H 1.07999 * 120.01281 * 0.35540 * 23 22 21 47 47 H 1.07994 * 120.11657 * 179.97438 * 24 23 22 48 48 H 1.08007 * 119.82747 * 179.85899 * 25 24 23 49 49 H 1.08000 * 119.87766 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7758 -0.1649 2.4372 6 1 0.8338 0.3219 2.6427 7 6 2.7403 -0.2580 3.4310 8 7 4.0014 -0.4527 3.1081 9 14 2.2488 -0.1067 5.2269 10 1 1.2791 -1.1788 5.5666 11 1 3.4548 -0.2398 6.0830 12 1 1.6218 1.2194 5.4584 13 6 2.7663 -1.9433 1.0647 14 6 1.7931 -3.1237 1.0929 15 6 2.5741 -4.4320 0.9550 16 7 1.6423 -5.5622 0.9814 17 6 2.1082 -6.8224 0.8750 18 8 3.2989 -7.0208 0.7579 19 6 1.1497 -7.9848 0.9027 20 1 0.5405 -7.9597 1.8062 21 6 0.2565 -7.9890 -0.3605 22 6 0.1175 -9.4728 -0.6412 23 6 -0.7501 -10.1859 -1.4387 24 6 -0.6553 -11.5647 -1.5031 25 6 0.3129 -12.2214 -0.7658 26 6 1.1851 -11.5090 0.0307 27 6 1.0981 -10.1206 0.0988 28 8 1.8581 -9.2317 0.8005 29 1 -0.3633 0.5643 0.8588 30 1 -0.3633 0.4615 -0.9182 31 1 -0.3632 -1.0260 0.0593 32 1 1.8934 -0.5138 -0.8900 33 1 3.1295 1.4427 -0.0291 34 1 1.6530 1.9647 -0.8752 35 1 1.7005 1.9479 0.9041 36 1 4.6754 -0.5181 3.8025 37 1 3.4714 -2.0340 1.8909 38 1 3.3109 -1.9440 0.1205 39 1 1.2484 -3.1230 2.0372 40 1 1.0880 -3.0330 0.2667 41 1 3.1185 -4.4324 0.0106 42 1 3.2796 -4.5229 1.7810 43 1 0.6901 -5.4034 1.0762 44 1 -0.7143 -7.5392 -0.1527 45 1 0.7505 -7.4807 -1.1886 46 1 -1.5047 -9.6690 -2.0130 47 1 -1.3346 -12.1260 -2.1273 48 1 0.3864 -13.2979 -0.8135 49 1 1.9381 -12.0297 0.6037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481351903.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:28 Heat of formation + Delta-G solvation = -28.199702 kcal Electronic energy + Delta-G solvation = -27929.420162 eV Core-core repulsion = 24050.314081 eV Total energy + Delta-G solvation = -3879.106081 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.60163 -39.36603 -37.55900 -36.78535 -35.06651 -33.20596 -32.49343 -31.60102 -30.36066 -29.94660 -28.62262 -26.20970 -25.66336 -24.49069 -23.05306 -22.53868 -21.94025 -20.97928 -20.33294 -19.53131 -17.92354 -17.41415 -17.11289 -16.40710 -16.27312 -15.52892 -15.33039 -14.97345 -14.67748 -14.42508 -14.11119 -14.04848 -13.68893 -13.51507 -13.48311 -13.25057 -13.08411 -12.88252 -12.43521 -12.29950 -12.07119 -11.76228 -11.54201 -11.48623 -11.42680 -11.32444 -11.12392 -10.98795 -10.76885 -10.67628 -10.46475 -10.23092 -9.97342 -9.80649 -9.60957 -9.51842 -9.23389 -8.96859 -8.47971 -8.45785 -6.56665 -5.78447 -3.36381 0.94434 1.05553 2.41159 2.58983 3.29805 3.35000 3.42255 3.42956 3.50193 4.01949 4.18685 4.46259 4.51078 4.57054 4.71667 4.75339 4.90160 5.06481 5.19234 5.22109 5.33201 5.35322 5.36118 5.61404 5.68197 5.74582 5.92434 5.97787 5.99017 6.06887 6.14207 6.14934 6.25383 6.27392 6.34555 6.37030 6.42664 6.63452 6.69751 6.70900 6.77085 6.77614 6.85730 7.08933 7.19627 7.32780 7.48710 7.67304 7.83221 8.16157 8.52722 9.19695 9.82569 10.41027 11.21450 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.002217 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.685700 B =12625.649075 C =13437.036808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.146 4.146 4 N -0.579 5.579 5 C -0.253 4.253 6 H 0.059 0.941 7 C 0.012 3.988 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.150 3.850 14 C -0.145 4.145 15 C 0.121 3.879 16 N -0.718 5.718 17 C 0.513 3.487 18 O -0.518 6.518 19 C 0.063 3.937 20 H 0.113 0.887 21 C -0.098 4.098 22 C -0.174 4.174 23 C -0.068 4.068 24 C -0.151 4.151 25 C -0.085 4.085 26 C -0.137 4.137 27 C 0.107 3.893 28 O -0.274 6.274 29 H 0.051 0.949 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.029 0.971 35 H 0.057 0.943 36 H 0.255 0.745 37 H 0.097 0.903 38 H 0.024 0.976 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.400 0.600 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.131 0.869 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.124 -18.281 -8.744 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.299 5.299 5 C -0.383 4.383 6 H 0.077 0.923 7 C -0.188 4.188 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.023 3.977 14 C -0.186 4.186 15 C -0.002 4.002 16 N -0.370 5.370 17 C 0.296 3.704 18 O -0.393 6.393 19 C 0.003 3.997 20 H 0.131 0.869 21 C -0.135 4.135 22 C -0.174 4.174 23 C -0.086 4.086 24 C -0.169 4.169 25 C -0.103 4.103 26 C -0.155 4.155 27 C 0.062 3.938 28 O -0.186 6.186 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.115 0.885 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.234 0.766 44 H 0.121 0.879 45 H 0.115 0.885 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.149 0.851 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.825 -18.405 -8.618 22.573 hybrid contribution -0.802 0.238 1.075 1.362 sum -10.626 -18.167 -7.543 22.358 Atomic orbital electron populations 1.22204 0.98937 1.00444 0.99721 1.20415 0.91932 0.92334 0.89830 1.22038 1.00844 0.97841 0.99712 1.43846 1.64343 1.20454 1.01224 1.18848 0.97453 1.34702 0.87260 0.92331 1.25158 0.94528 1.00491 0.98665 1.69964 0.99385 1.51442 1.32063 0.86529 0.77440 0.78190 0.85553 1.21014 1.21684 1.20834 1.20817 0.93072 0.82862 1.00965 1.22514 1.00446 0.94012 1.01589 1.21549 0.92216 0.84268 1.02123 1.46051 1.11546 1.05402 1.74049 1.19952 0.88995 0.83736 0.77707 1.90762 1.16056 1.84803 1.47697 1.23223 0.92127 0.83846 1.00493 0.86923 1.21741 1.00925 0.93765 0.97094 1.20714 1.00058 0.94892 1.01779 1.20317 0.97543 0.93776 0.96954 1.21046 1.00166 0.93985 1.01694 1.20899 0.94228 0.99910 0.95243 1.20294 1.02431 0.89596 1.03218 1.19719 0.90768 0.91258 0.92097 1.87040 1.40149 1.20336 1.71102 0.92970 0.94643 0.93806 0.93744 0.93330 0.95218 0.92361 0.93506 0.88510 0.95710 0.91565 0.93186 0.91782 0.91225 0.76592 0.87907 0.88457 0.85590 0.85397 0.85069 0.85241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.19 37.16 0.34 -2.35 16 2 C 0.16 3.23 3.37 -67.93 -0.23 3.00 16 3 C -0.15 -2.88 9.11 37.16 0.34 -2.54 16 4 N -0.58 -13.30 2.37 -165.66 -0.39 -13.69 16 5 C -0.25 -6.44 8.04 -15.06 -0.12 -6.56 16 6 H 0.06 1.51 7.14 -52.48 -0.37 1.14 16 7 C 0.01 0.31 4.96 -17.43 -0.09 0.23 16 8 N -0.89 -24.62 11.43 55.49 0.63 -23.99 16 9 Si 0.89 20.96 29.60 -169.99 -5.03 15.93 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.15 3.25 5.28 -4.04 -0.02 3.22 16 14 C -0.15 -2.51 5.65 -26.73 -0.15 -2.66 16 15 C 0.12 1.93 5.67 -4.05 -0.02 1.91 16 16 N -0.72 -9.33 5.56 -60.30 -0.33 -9.67 16 17 C 0.51 7.47 7.13 -10.99 -0.08 7.40 16 18 O -0.52 -10.06 16.57 -13.51 -0.22 -10.28 16 19 C 0.06 0.72 4.04 -26.99 -0.11 0.61 16 20 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 21 C -0.10 -0.89 6.64 -26.52 -0.18 -1.06 16 22 C -0.17 -1.76 6.27 -104.10 -0.65 -2.41 16 23 C -0.07 -0.56 10.03 -39.72 -0.40 -0.96 16 24 C -0.15 -1.11 10.07 -39.52 -0.40 -1.51 16 25 C -0.08 -0.66 10.02 -39.67 -0.40 -1.05 16 26 C -0.14 -1.36 10.06 -39.30 -0.40 -1.75 16 27 C 0.11 1.28 7.04 -38.95 -0.27 1.00 16 28 O -0.27 -3.89 10.41 -40.04 -0.42 -4.30 16 29 H 0.05 0.97 7.32 -51.93 -0.38 0.59 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.04 0.84 7.77 -51.93 -0.40 0.44 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.03 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.06 1.24 7.50 -51.93 -0.39 0.85 16 36 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.10 2.43 5.48 -51.93 -0.28 2.14 16 38 H 0.02 0.52 7.88 -51.93 -0.41 0.11 16 39 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.40 3.96 8.47 -40.82 -0.35 3.62 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.10 0.93 7.92 -51.93 -0.41 0.52 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 47 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 48 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 49 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 401.27 15.07 6.05 6.05 Total: -1.00 -31.78 401.27 -10.60 -42.39 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.05 Total: 3.07 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.83 Total: -5.50 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: -0.09 Total: -47.35 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.64 Total: -14.59 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.78 -10.60 -42.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481351903.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.186 kcal (2) G-P(sol) polarization free energy of solvation -31.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds