Wall clock time and date at job start Tue Mar 31 2020 16:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46812 * 2 1 4 4 N 1.46497 * 109.47302 * 119.99844 * 2 1 3 5 5 C 1.36940 * 119.99705 * 294.90444 * 4 2 1 6 6 H 1.08005 * 119.99837 * 37.15187 * 5 4 2 7 7 C 1.38806 * 120.00096 * 217.14202 * 5 4 2 8 8 N 1.31621 * 120.00271 * 21.27305 * 7 5 4 9 9 Si 1.86806 * 120.00271 * 201.26695 * 7 5 4 10 10 H 1.48497 * 109.47072 * 60.00184 * 9 7 5 11 11 H 1.48501 * 109.46924 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47090 * 300.00206 * 9 7 5 13 13 C 1.46496 * 120.00162 * 114.90612 * 4 2 1 14 14 C 1.53005 * 109.47105 * 270.00042 * 13 4 2 15 15 C 1.52993 * 109.47166 * 179.97438 * 14 13 4 16 16 N 1.46500 * 109.47434 * 180.02562 * 15 14 13 17 17 C 1.34777 * 120.00425 * 180.02562 * 16 15 14 18 18 O 1.21280 * 119.99805 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.99923 * 179.97438 * 17 16 15 20 20 H 1.08999 * 110.67044 * 304.30508 * 19 17 16 21 21 C 1.54712 * 110.74767 * 67.51766 * 19 17 16 22 22 C 1.51644 * 101.92832 * 143.60122 * 21 19 17 23 23 C 1.37742 * 132.18090 * 164.59830 * 22 21 19 24 24 C 1.38353 * 119.98213 * 180.40711 * 23 22 21 25 25 C 1.38287 * 119.76617 * 359.94371 * 24 23 22 26 26 C 1.37939 * 120.35078 * 359.87947 * 25 24 23 27 27 C 1.38885 * 107.04093 * 344.62721 * 22 21 19 28 28 O 1.36384 * 111.32176 * 359.06943 * 27 22 21 29 29 H 1.08990 * 109.47270 * 303.30913 * 1 2 3 30 30 H 1.09001 * 109.47131 * 63.31624 * 1 2 3 31 31 H 1.09003 * 109.46507 * 183.31009 * 1 2 3 32 32 H 1.09003 * 109.47484 * 240.00209 * 2 1 3 33 33 H 1.08999 * 109.47107 * 181.62063 * 3 2 1 34 34 H 1.09008 * 109.46977 * 301.61776 * 3 2 1 35 35 H 1.09001 * 109.47323 * 61.61997 * 3 2 1 36 36 H 0.96993 * 120.00851 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47019 * 150.00225 * 13 4 2 38 38 H 1.08995 * 109.47190 * 29.99877 * 13 4 2 39 39 H 1.09009 * 109.46916 * 300.00218 * 14 13 4 40 40 H 1.09003 * 109.46987 * 59.99729 * 14 13 4 41 41 H 1.09000 * 109.47617 * 300.00100 * 15 14 13 42 42 H 1.09003 * 109.47350 * 59.99999 * 15 14 13 43 43 H 0.97005 * 119.99392 * 359.97438 * 16 15 14 44 44 H 1.08998 * 110.94111 * 261.76411 * 21 19 17 45 45 H 1.09004 * 110.93943 * 25.45193 * 21 19 17 46 46 H 1.07999 * 120.01281 * 0.35540 * 23 22 21 47 47 H 1.07994 * 120.11657 * 179.97438 * 24 23 22 48 48 H 1.08007 * 119.82747 * 179.85899 * 25 24 23 49 49 H 1.08000 * 119.87766 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7758 -0.1649 2.4372 6 1 0.8338 0.3219 2.6427 7 6 2.7403 -0.2580 3.4310 8 7 4.0014 -0.4527 3.1081 9 14 2.2488 -0.1067 5.2269 10 1 1.2791 -1.1788 5.5666 11 1 3.4548 -0.2398 6.0830 12 1 1.6218 1.2194 5.4584 13 6 2.7663 -1.9433 1.0647 14 6 1.7931 -3.1237 1.0929 15 6 2.5741 -4.4320 0.9550 16 7 1.6423 -5.5622 0.9814 17 6 2.1082 -6.8224 0.8750 18 8 3.2989 -7.0208 0.7579 19 6 1.1497 -7.9848 0.9027 20 1 0.5405 -7.9597 1.8062 21 6 0.2565 -7.9890 -0.3605 22 6 0.1175 -9.4728 -0.6412 23 6 -0.7501 -10.1859 -1.4387 24 6 -0.6553 -11.5647 -1.5031 25 6 0.3129 -12.2214 -0.7658 26 6 1.1851 -11.5090 0.0307 27 6 1.0981 -10.1206 0.0988 28 8 1.8581 -9.2317 0.8005 29 1 -0.3633 0.5643 0.8588 30 1 -0.3633 0.4615 -0.9182 31 1 -0.3632 -1.0260 0.0593 32 1 1.8934 -0.5138 -0.8900 33 1 3.1295 1.4427 -0.0291 34 1 1.6530 1.9647 -0.8752 35 1 1.7005 1.9479 0.9041 36 1 4.6754 -0.5181 3.8025 37 1 3.4714 -2.0340 1.8909 38 1 3.3109 -1.9440 0.1205 39 1 1.2484 -3.1230 2.0372 40 1 1.0880 -3.0330 0.2667 41 1 3.1185 -4.4324 0.0106 42 1 3.2796 -4.5229 1.7810 43 1 0.6901 -5.4034 1.0762 44 1 -0.7143 -7.5392 -0.1527 45 1 0.7505 -7.4807 -1.1886 46 1 -1.5047 -9.6690 -2.0130 47 1 -1.3346 -12.1260 -2.1273 48 1 0.3864 -13.2979 -0.8135 49 1 1.9381 -12.0297 0.6037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481351903.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:27 Heat of formation + Delta-G solvation = -46.065927 kcal Electronic energy + Delta-G solvation = -27930.194900 eV Core-core repulsion = 24050.314081 eV Total energy + Delta-G solvation = -3879.880819 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.42896 -40.49419 -38.54603 -38.23936 -36.42962 -34.32665 -33.98405 -33.06142 -31.08466 -30.99889 -30.03265 -27.71125 -27.19978 -25.70509 -24.44586 -23.28994 -22.62866 -22.40261 -21.55541 -21.26347 -18.81661 -18.41274 -18.14172 -17.85211 -17.23977 -16.89704 -16.64735 -16.37336 -16.03672 -15.63845 -15.45619 -15.09060 -14.93718 -14.55100 -14.44759 -14.32730 -14.05430 -14.02639 -13.94471 -13.35096 -13.25463 -13.14087 -13.02881 -12.81918 -12.68583 -12.65945 -12.50093 -12.37824 -12.21086 -12.14858 -11.89807 -11.76977 -11.68925 -11.30962 -11.23498 -10.99321 -10.44499 -10.22964 -9.86788 -9.18175 -8.47422 -7.74859 -5.36182 0.30082 0.38849 1.32856 1.46573 1.49739 1.54861 1.57926 2.45720 2.54711 2.76773 3.23519 3.30893 3.38329 3.63034 3.72256 3.87496 3.95698 4.18172 4.20726 4.28366 4.32213 4.38080 4.51535 4.52957 4.56721 4.65129 4.68064 4.72122 4.74513 4.82561 4.94807 4.99714 5.07000 5.11317 5.17760 5.22831 5.25096 5.33929 5.35864 5.42926 5.51214 5.53959 5.62857 5.65300 5.70333 5.77279 5.92339 6.14556 6.41360 6.54962 7.06132 7.25549 7.96835 8.48413 9.20131 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017434 B = 0.002217 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.685700 B =12625.649075 C =13437.036808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 C -0.138 4.138 4 N -0.592 5.592 5 C -0.242 4.242 6 H 0.057 0.943 7 C -0.039 4.039 8 N -0.919 5.919 9 Si 0.946 3.054 10 H -0.278 1.278 11 H -0.301 1.301 12 H -0.278 1.278 13 C 0.148 3.852 14 C -0.120 4.120 15 C 0.133 3.867 16 N -0.701 5.701 17 C 0.513 3.487 18 O -0.575 6.575 19 C 0.065 3.935 20 H 0.140 0.860 21 C -0.089 4.089 22 C -0.182 4.182 23 C -0.071 4.071 24 C -0.146 4.146 25 C -0.085 4.085 26 C -0.154 4.154 27 C 0.067 3.933 28 O -0.312 6.312 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.022 0.978 34 H 0.065 0.935 35 H 0.036 0.964 36 H 0.247 0.753 37 H 0.060 0.940 38 H 0.025 0.975 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.419 0.581 44 H 0.140 0.860 45 H 0.090 0.910 46 H 0.153 0.847 47 H 0.159 0.841 48 H 0.159 0.841 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.810 -19.367 -10.469 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 C -0.197 4.197 4 N -0.313 5.313 5 C -0.373 4.373 6 H 0.074 0.926 7 C -0.236 4.236 8 N -0.563 5.563 9 Si 0.775 3.225 10 H -0.204 1.204 11 H -0.228 1.228 12 H -0.204 1.204 13 C 0.021 3.979 14 C -0.160 4.160 15 C 0.009 3.991 16 N -0.354 5.354 17 C 0.298 3.702 18 O -0.454 6.454 19 C 0.005 3.995 20 H 0.158 0.842 21 C -0.126 4.126 22 C -0.183 4.183 23 C -0.089 4.089 24 C -0.163 4.163 25 C -0.103 4.103 26 C -0.172 4.172 27 C 0.022 3.978 28 O -0.226 6.226 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.257 0.743 44 H 0.158 0.842 45 H 0.108 0.892 46 H 0.170 0.830 47 H 0.177 0.823 48 H 0.176 0.824 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.588 -19.486 -10.358 25.916 hybrid contribution 0.325 0.538 1.495 1.622 sum -13.264 -18.948 -8.862 24.769 Atomic orbital electron populations 1.22046 0.96423 1.01004 1.00595 1.20672 0.93757 0.91992 0.89004 1.21965 0.99209 0.98242 1.00276 1.44078 1.64408 1.21294 1.01565 1.19003 0.96833 1.33131 0.88344 0.92566 1.25753 0.94547 1.01552 1.01728 1.70108 1.00150 1.53712 1.32377 0.85678 0.76633 0.78290 0.81880 1.20379 1.22775 1.20370 1.20718 0.93509 0.84263 0.99441 1.22128 0.99402 0.92602 1.01894 1.21198 0.92145 0.84815 1.00951 1.45778 1.12114 1.04339 1.73165 1.20589 0.88782 0.84674 0.76133 1.90733 1.18690 1.85647 1.50351 1.23325 0.91299 0.81752 1.03089 0.84229 1.21772 1.01857 0.93592 0.95405 1.20929 1.00060 0.95268 1.02066 1.20703 0.97478 0.94322 0.96421 1.21498 0.99861 0.94002 1.00978 1.21272 0.93474 1.01278 0.94253 1.20584 1.03274 0.89323 1.04047 1.20091 0.92064 0.91914 0.93686 1.86975 1.41993 1.21526 1.72080 0.94504 0.91602 0.93108 0.92426 0.95842 0.91624 0.94525 0.94383 0.92190 0.95642 0.92590 0.90831 0.92079 0.93824 0.74305 0.84248 0.89173 0.82982 0.82334 0.82362 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 9.19 71.98 0.66 -3.86 16 2 C 0.15 5.78 3.37 44.99 0.15 5.93 16 3 C -0.14 -5.32 9.11 71.98 0.66 -4.67 16 4 N -0.59 -27.06 2.37 -678.04 -1.61 -28.66 16 5 C -0.24 -12.38 8.04 84.03 0.68 -11.70 16 6 H 0.06 2.88 7.14 -2.91 -0.02 2.86 16 7 C -0.04 -2.09 4.96 84.86 0.42 -1.67 16 8 N -0.92 -52.89 11.43 21.65 0.25 -52.64 16 9 Si 0.95 43.77 29.60 68.60 2.03 45.80 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 C 0.15 6.45 5.28 86.38 0.46 6.91 16 14 C -0.12 -4.05 5.65 30.59 0.17 -3.88 16 15 C 0.13 4.27 5.67 86.38 0.49 4.76 16 16 N -0.70 -17.58 5.56 -463.07 -2.57 -20.15 16 17 C 0.51 15.02 7.13 87.65 0.62 15.65 16 18 O -0.58 -23.35 16.57 15.20 0.25 -23.10 16 19 C 0.06 1.44 4.04 30.43 0.12 1.56 16 20 H 0.14 2.26 8.14 -2.39 -0.02 2.24 16 21 C -0.09 -1.43 6.64 30.73 0.20 -1.23 16 22 C -0.18 -3.38 6.27 -19.53 -0.12 -3.50 16 23 C -0.07 -0.95 10.03 22.18 0.22 -0.73 16 24 C -0.15 -1.66 10.07 22.31 0.22 -1.44 16 25 C -0.09 -1.13 10.02 22.21 0.22 -0.91 16 26 C -0.15 -3.00 10.06 22.45 0.23 -2.77 16 27 C 0.07 1.59 7.04 22.68 0.16 1.75 16 28 O -0.31 -9.14 10.41 -79.73 -0.83 -9.97 16 29 H 0.04 1.28 7.32 -2.39 -0.02 1.26 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 2.05 7.77 -2.39 -0.02 2.03 16 33 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.04 1.54 7.50 -2.39 -0.02 1.52 16 36 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 37 H 0.06 3.13 5.48 -2.39 -0.01 3.12 16 38 H 0.03 1.08 7.88 -2.39 -0.02 1.06 16 39 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.42 7.29 8.47 -92.70 -0.79 6.51 16 44 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.09 1.58 7.92 -2.39 -0.02 1.56 16 46 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 47 H 0.16 0.82 8.06 -2.91 -0.02 0.79 16 48 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 49 H 0.13 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -73.09 401.27 3.24 -69.85 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.15 Total: 18.67 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.57 Total: 0.20 kcal Atomic # 7 Polarization: -97.52 SS G_CDS: -3.93 Total: -101.46 kcal Atomic # 8 Polarization: -32.49 SS G_CDS: -0.58 Total: -33.07 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -73.09 3.24 -69.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481351903.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.784 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds