Wall clock time and date at job start Tue Mar 31 2020 16:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47588 * 2 1 4 4 H 1.08992 * 109.47144 * 305.00383 * 3 2 1 5 5 O 1.42900 * 109.46943 * 65.00096 * 3 2 1 6 6 C 1.35905 * 117.00179 * 265.77879 * 5 3 2 7 7 C 1.38754 * 120.05286 * 356.02221 * 6 5 3 8 8 C 1.38120 * 119.94572 * 180.02562 * 7 6 5 9 9 C 1.38292 * 120.05147 * 0.02562 * 8 7 6 10 10 C 1.38240 * 120.11493 * 359.95213 * 9 8 7 11 11 C 1.50698 * 119.97560 * 179.97438 * 10 9 8 12 12 C 1.38175 * 120.05260 * 0.28354 * 10 9 8 13 13 C 1.50700 * 109.47258 * 184.99931 * 3 2 1 14 14 O 1.21280 * 119.99927 * 245.00120 * 13 3 2 15 15 N 1.34777 * 119.99698 * 65.00191 * 13 3 2 16 16 C 1.46500 * 119.99653 * 180.02562 * 15 13 3 17 17 C 1.50699 * 109.46886 * 179.97438 * 16 15 13 18 18 C 1.31002 * 119.99842 * 127.09778 * 17 16 15 19 19 C 1.50700 * 120.00261 * 7.84991 * 18 17 16 20 20 N 1.46492 * 109.47219 * 127.09853 * 19 18 17 21 21 C 1.36941 * 119.99667 * 180.02562 * 20 19 18 22 22 H 1.07993 * 120.00379 * 359.97438 * 21 20 19 23 23 C 1.38819 * 119.99756 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00026 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99748 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47606 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46698 * 120.00272 * 25 23 21 28 28 H 1.48501 * 109.47194 * 239.99753 * 25 23 21 29 29 H 1.09000 * 109.47194 * 300.00232 * 1 2 3 30 30 H 1.09007 * 109.46943 * 59.99423 * 1 2 3 31 31 H 1.08997 * 109.47739 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46746 * 240.00038 * 2 1 3 33 33 H 1.09007 * 109.46943 * 120.00577 * 2 1 3 34 34 H 1.08003 * 120.02541 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.97434 * 180.02562 * 8 7 6 36 36 H 1.07995 * 119.93895 * 179.97438 * 9 8 7 37 37 H 1.08994 * 109.47279 * 90.00372 * 11 10 9 38 38 H 1.09000 * 109.47519 * 210.00660 * 11 10 9 39 39 H 1.09000 * 109.46992 * 330.00379 * 11 10 9 40 40 H 1.07997 * 120.02361 * 179.74161 * 12 10 9 41 41 H 0.96999 * 120.00483 * 359.97438 * 15 13 3 42 42 H 1.08995 * 109.47184 * 299.99825 * 16 15 13 43 43 H 1.09004 * 109.47291 * 60.00206 * 16 15 13 44 44 H 1.08001 * 120.00633 * 307.09472 * 17 16 15 45 45 H 1.08005 * 119.99706 * 187.85074 * 18 17 16 46 46 H 1.09000 * 109.47100 * 247.10004 * 19 18 17 47 47 H 1.09003 * 109.46885 * 7.09461 * 19 18 17 48 48 H 0.96992 * 120.00486 * 359.97438 * 20 19 18 49 49 H 0.97000 * 120.00114 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 8 1.6621 2.0813 1.2211 6 6 0.5069 2.7971 1.2111 7 6 -0.2046 2.9516 0.0299 8 6 -1.3781 3.6800 0.0221 9 6 -1.8437 4.2555 1.1902 10 6 -1.1369 4.1027 2.3684 11 6 -1.6469 4.7317 3.6394 12 6 0.0401 3.3790 2.3804 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7876 15 7 4.1260 0.9826 -1.2474 16 6 5.5861 0.9838 -1.3675 17 6 5.9801 0.4211 -2.7088 18 6 6.7815 1.0983 -3.4933 19 6 7.4493 2.3511 -2.9881 20 7 8.8948 2.2560 -3.2062 21 6 9.7141 3.2843 -2.8235 22 1 9.2947 4.1656 -2.3612 23 6 11.0839 3.1940 -3.0297 24 7 11.5951 2.1201 -3.5936 25 14 12.2015 4.5970 -2.5083 26 1 11.3861 5.6809 -1.9037 27 1 13.1842 4.1024 -1.5108 28 1 12.9227 5.1227 -3.6951 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 0.1589 2.5026 -0.8827 35 1 -1.9325 3.8002 -0.8969 36 1 -2.7613 4.8250 1.1820 37 1 -2.3024 4.0296 4.1546 38 1 -0.8046 4.9825 4.2841 39 1 -2.2026 5.6380 3.3987 40 1 0.5941 3.2635 3.3002 41 1 3.5797 0.6490 -1.9761 42 1 5.9572 2.0047 -1.2781 43 1 6.0163 0.3701 -0.5759 44 1 5.6020 -0.5404 -3.0234 45 1 6.9635 0.7586 -4.5023 46 1 7.0568 3.2143 -3.5257 47 1 7.2493 2.4650 -1.9226 48 1 9.2716 1.4644 -3.6210 49 1 12.5523 2.0568 -3.7374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483070699.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:59 Heat of formation + Delta-G solvation = -16.275935 kcal Electronic energy + Delta-G solvation = -27351.000069 eV Core-core repulsion = 23472.411041 eV Total energy + Delta-G solvation = -3878.589028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06911 -39.58976 -37.93473 -36.54131 -34.69677 -34.06036 -32.88166 -32.74538 -30.61020 -30.44506 -28.28046 -27.34723 -26.16018 -24.76007 -22.97273 -22.83186 -22.50234 -21.62447 -20.26086 -18.89084 -18.55445 -17.49080 -16.76288 -16.47584 -16.26169 -16.07547 -15.78987 -15.40020 -14.83839 -14.56795 -14.34275 -14.18994 -14.03006 -13.84594 -13.56427 -13.51726 -13.23294 -13.19975 -12.75896 -12.65458 -12.52381 -12.40684 -12.30830 -12.14078 -11.94299 -11.76830 -11.53480 -11.25628 -10.97742 -10.82751 -10.81378 -10.45845 -10.01579 -9.92386 -9.78497 -9.24588 -9.11434 -9.05674 -8.64658 -8.43321 -6.93178 -5.77777 -3.07033 0.98340 1.14053 2.09256 2.42753 2.60669 3.38488 3.44379 3.48069 3.50486 3.52729 4.20690 4.30542 4.40422 4.48600 4.53978 4.61238 4.67950 4.82512 4.91971 4.92792 5.01218 5.01926 5.16947 5.21562 5.24837 5.25055 5.37957 5.46576 5.54996 5.55372 5.62688 5.64778 5.75172 5.79472 5.84312 5.93011 6.00558 6.09724 6.19008 6.24757 6.26840 6.43981 6.50614 6.54437 6.83375 7.06828 7.10206 7.36547 7.70533 8.07135 8.40618 9.52192 10.07590 10.42909 11.44996 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015769 B = 0.001943 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.262089 B =14409.152996 C =15480.112475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C 0.065 3.935 4 H 0.103 0.897 5 O -0.281 6.281 6 C 0.139 3.861 7 C -0.218 4.218 8 C -0.075 4.075 9 C -0.162 4.162 10 C -0.047 4.047 11 C -0.116 4.116 12 C -0.153 4.153 13 C 0.510 3.490 14 O -0.513 6.513 15 N -0.719 5.719 16 C 0.142 3.858 17 C -0.201 4.201 18 C -0.106 4.106 19 C 0.161 3.839 20 N -0.728 5.728 21 C -0.241 4.241 22 H 0.072 0.928 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.909 3.091 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.131 0.869 41 H 0.399 0.601 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.029 0.971 47 H 0.036 0.964 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.726 -3.209 7.009 33.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.176 4.176 3 C 0.005 3.995 4 H 0.121 0.879 5 O -0.193 6.193 6 C 0.093 3.907 7 C -0.237 4.237 8 C -0.093 4.093 9 C -0.180 4.180 10 C -0.047 4.047 11 C -0.172 4.172 12 C -0.171 4.171 13 C 0.294 3.706 14 O -0.387 6.387 15 N -0.372 5.372 16 C 0.020 3.980 17 C -0.220 4.220 18 C -0.126 4.126 19 C 0.034 3.966 20 N -0.372 5.372 21 C -0.372 4.372 22 H 0.090 0.910 23 C -0.210 4.210 24 N -0.581 5.581 25 Si 0.740 3.260 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.149 0.851 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.091 0.909 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.046 0.954 47 H 0.053 0.947 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -32.001 -2.755 7.934 33.085 hybrid contribution 0.587 0.135 -0.646 0.884 sum -31.414 -2.621 7.288 32.355 Atomic orbital electron populations 1.21930 0.94342 1.02548 1.02519 1.22000 0.97445 0.93897 1.04294 1.22380 0.93296 0.95332 0.88513 0.87938 1.86234 1.37132 1.62561 1.33376 1.19023 0.85716 0.91669 0.94248 1.21279 0.98650 1.06265 0.97479 1.20898 0.94979 0.95274 0.98159 1.20935 1.01187 1.03465 0.92427 1.19712 0.93472 0.95804 0.95720 1.20820 1.01627 1.00378 0.94407 1.20308 0.97758 1.02076 0.97004 1.20143 0.89049 0.78543 0.82881 1.90779 1.64625 1.44697 1.38617 1.45920 1.08379 1.65024 1.17865 1.20596 0.78256 1.02999 0.96145 1.22568 1.03990 0.99836 0.95651 1.23317 0.94355 0.96489 0.98422 1.20017 0.86086 0.92810 0.97690 1.42269 0.99615 1.21409 1.73886 1.19297 0.88481 0.96602 1.32781 0.90986 1.24768 0.96792 0.97870 1.01565 1.69676 1.11662 1.27900 1.48879 0.86084 0.80804 0.81404 0.77729 1.20457 1.21772 1.21821 0.91968 0.92213 0.91855 0.89672 0.89945 0.85191 0.85766 0.86007 0.90868 0.91196 0.91263 0.85105 0.76712 0.89157 0.90860 0.86956 0.86806 0.95391 0.94664 0.78155 0.93520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 8.48 37.16 0.32 -0.66 16 2 C -0.14 -1.01 5.61 -26.73 -0.15 -1.16 16 3 C 0.06 0.64 2.57 -27.88 -0.07 0.57 16 4 H 0.10 0.78 5.31 -51.93 -0.28 0.51 16 5 O -0.28 -3.49 9.20 -39.30 -0.36 -3.85 16 6 C 0.14 1.48 5.27 -39.22 -0.21 1.28 16 7 C -0.22 -1.87 7.24 -39.43 -0.29 -2.16 16 8 C -0.07 -0.57 10.04 -39.60 -0.40 -0.96 16 9 C -0.16 -1.23 9.70 -39.56 -0.38 -1.62 16 10 C -0.05 -0.39 5.88 -104.65 -0.62 -1.01 16 11 C -0.12 -0.67 10.01 36.00 0.36 -0.31 16 12 C -0.15 -1.54 9.64 -39.43 -0.38 -1.92 16 13 C 0.51 6.70 7.18 -10.99 -0.08 6.63 16 14 O -0.51 -9.41 16.51 -14.30 -0.24 -9.65 16 15 N -0.72 -7.87 5.45 -61.47 -0.33 -8.21 16 16 C 0.14 1.97 5.75 -5.19 -0.03 1.94 16 17 C -0.20 -2.61 9.63 -36.03 -0.35 -2.96 16 18 C -0.11 -1.68 9.63 -36.03 -0.35 -2.03 16 19 C 0.16 3.26 6.34 -5.20 -0.03 3.23 16 20 N -0.73 -18.77 5.59 -61.09 -0.34 -19.11 16 21 C -0.24 -6.89 9.99 -15.05 -0.15 -7.04 16 22 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 25 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 H 0.06 0.49 6.31 -51.93 -0.33 0.16 16 30 H 0.06 0.31 6.93 -51.92 -0.36 -0.05 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.44 7.77 -51.93 -0.40 0.04 16 33 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.13 0.88 4.69 -52.48 -0.25 0.64 16 35 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 39 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.40 2.94 8.17 -40.82 -0.33 2.61 16 42 H 0.09 1.48 5.31 -51.93 -0.28 1.21 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 46 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.04 0.73 5.31 -51.93 -0.28 0.46 16 48 H 0.38 10.36 7.66 -40.82 -0.31 10.04 16 49 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -35.29 399.91 -9.87 -45.15 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -7.42 Total: 8.33 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -2.90 Total: -8.69 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: 0.05 Total: -55.12 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.60 Total: -13.49 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.29 -9.87 -45.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483070699.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.877 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds