Wall clock time and date at job start Tue Mar 31 2020 16:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47588 * 2 1 4 4 H 1.08992 * 109.47144 * 305.00383 * 3 2 1 5 5 O 1.42900 * 109.46943 * 65.00096 * 3 2 1 6 6 C 1.35905 * 117.00179 * 265.77879 * 5 3 2 7 7 C 1.38754 * 120.05286 * 356.02221 * 6 5 3 8 8 C 1.38120 * 119.94572 * 180.02562 * 7 6 5 9 9 C 1.38292 * 120.05147 * 0.02562 * 8 7 6 10 10 C 1.38240 * 120.11493 * 359.95213 * 9 8 7 11 11 C 1.50698 * 119.97560 * 179.97438 * 10 9 8 12 12 C 1.38175 * 120.05260 * 0.28354 * 10 9 8 13 13 C 1.50700 * 109.47258 * 184.99931 * 3 2 1 14 14 O 1.21280 * 119.99927 * 245.00120 * 13 3 2 15 15 N 1.34777 * 119.99698 * 65.00191 * 13 3 2 16 16 C 1.46500 * 119.99653 * 180.02562 * 15 13 3 17 17 C 1.50699 * 109.46886 * 179.97438 * 16 15 13 18 18 C 1.31002 * 119.99842 * 127.09778 * 17 16 15 19 19 C 1.50700 * 120.00261 * 7.84991 * 18 17 16 20 20 N 1.46492 * 109.47219 * 127.09853 * 19 18 17 21 21 C 1.36941 * 119.99667 * 180.02562 * 20 19 18 22 22 H 1.07993 * 120.00379 * 359.97438 * 21 20 19 23 23 C 1.38819 * 119.99756 * 179.97438 * 21 20 19 24 24 N 1.31622 * 120.00026 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99748 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47606 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46698 * 120.00272 * 25 23 21 28 28 H 1.48501 * 109.47194 * 239.99753 * 25 23 21 29 29 H 1.09000 * 109.47194 * 300.00232 * 1 2 3 30 30 H 1.09007 * 109.46943 * 59.99423 * 1 2 3 31 31 H 1.08997 * 109.47739 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46746 * 240.00038 * 2 1 3 33 33 H 1.09007 * 109.46943 * 120.00577 * 2 1 3 34 34 H 1.08003 * 120.02541 * 0.02562 * 7 6 5 35 35 H 1.08000 * 119.97434 * 180.02562 * 8 7 6 36 36 H 1.07995 * 119.93895 * 179.97438 * 9 8 7 37 37 H 1.08994 * 109.47279 * 90.00372 * 11 10 9 38 38 H 1.09000 * 109.47519 * 210.00660 * 11 10 9 39 39 H 1.09000 * 109.46992 * 330.00379 * 11 10 9 40 40 H 1.07997 * 120.02361 * 179.74161 * 12 10 9 41 41 H 0.96999 * 120.00483 * 359.97438 * 15 13 3 42 42 H 1.08995 * 109.47184 * 299.99825 * 16 15 13 43 43 H 1.09004 * 109.47291 * 60.00206 * 16 15 13 44 44 H 1.08001 * 120.00633 * 307.09472 * 17 16 15 45 45 H 1.08005 * 119.99706 * 187.85074 * 18 17 16 46 46 H 1.09000 * 109.47100 * 247.10004 * 19 18 17 47 47 H 1.09003 * 109.46885 * 7.09461 * 19 18 17 48 48 H 0.96992 * 120.00486 * 359.97438 * 20 19 18 49 49 H 0.97000 * 120.00114 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8417 5 8 1.6621 2.0813 1.2211 6 6 0.5069 2.7971 1.2111 7 6 -0.2046 2.9516 0.0299 8 6 -1.3781 3.6800 0.0221 9 6 -1.8437 4.2555 1.1902 10 6 -1.1369 4.1027 2.3684 11 6 -1.6469 4.7317 3.6394 12 6 0.0401 3.3790 2.3804 13 6 3.5420 1.4442 -0.1238 14 8 4.2251 1.8609 0.7876 15 7 4.1260 0.9826 -1.2474 16 6 5.5861 0.9838 -1.3675 17 6 5.9801 0.4211 -2.7088 18 6 6.7815 1.0983 -3.4933 19 6 7.4493 2.3511 -2.9881 20 7 8.8948 2.2560 -3.2062 21 6 9.7141 3.2843 -2.8235 22 1 9.2947 4.1656 -2.3612 23 6 11.0839 3.1940 -3.0297 24 7 11.5951 2.1201 -3.5936 25 14 12.2015 4.5970 -2.5083 26 1 11.3861 5.6809 -1.9037 27 1 13.1842 4.1024 -1.5108 28 1 12.9227 5.1227 -3.6951 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5140 0.8900 34 1 0.1589 2.5026 -0.8827 35 1 -1.9325 3.8002 -0.8969 36 1 -2.7613 4.8250 1.1820 37 1 -2.3024 4.0296 4.1546 38 1 -0.8046 4.9825 4.2841 39 1 -2.2026 5.6380 3.3987 40 1 0.5941 3.2635 3.3002 41 1 3.5797 0.6490 -1.9761 42 1 5.9572 2.0047 -1.2781 43 1 6.0163 0.3701 -0.5759 44 1 5.6020 -0.5404 -3.0234 45 1 6.9635 0.7586 -4.5023 46 1 7.0568 3.2143 -3.5257 47 1 7.2493 2.4650 -1.9226 48 1 9.2716 1.4644 -3.6210 49 1 12.5523 2.0568 -3.7374 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483070699.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:58 Heat of formation + Delta-G solvation = -38.719646 kcal Electronic energy + Delta-G solvation = -27351.973301 eV Core-core repulsion = 23472.411041 eV Total energy + Delta-G solvation = -3879.562260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87380 -40.52237 -38.70730 -37.91926 -36.18427 -35.02324 -34.15888 -33.43606 -32.34622 -31.22059 -29.23397 -27.90081 -27.59133 -26.16901 -24.41693 -23.56107 -23.47162 -22.49041 -21.15210 -20.14953 -19.31374 -19.08890 -18.10867 -17.53299 -17.07196 -16.94153 -16.70142 -16.42950 -16.33486 -15.56030 -15.41184 -15.30596 -15.09033 -14.91349 -14.74047 -14.49538 -14.22428 -14.16601 -13.91082 -13.78138 -13.32881 -13.31104 -13.03434 -12.95955 -12.92275 -12.75801 -12.73611 -12.50212 -12.16143 -12.07909 -11.93799 -11.88711 -11.68175 -11.45344 -11.06334 -10.96023 -10.40318 -9.97984 -9.73947 -9.11068 -9.01486 -8.00026 -5.29343 0.36419 0.48556 0.97454 1.40040 1.44868 1.45960 1.56231 1.70591 2.53037 2.57608 2.80194 3.33424 3.47491 3.58013 3.70043 3.78822 3.91204 3.94658 4.11171 4.15325 4.16304 4.24181 4.32618 4.38065 4.39317 4.45631 4.55983 4.58229 4.72217 4.82291 4.82690 4.87625 4.89393 4.97438 5.00747 5.05120 5.08824 5.24033 5.26866 5.30795 5.37805 5.43940 5.49803 5.56981 5.66115 5.84459 5.84677 6.23072 6.32768 6.49789 7.10722 7.29062 8.02720 8.27523 9.23383 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015769 B = 0.001943 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.262089 B =14409.152996 C =15480.112475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.133 4.133 3 C 0.069 3.931 4 H 0.129 0.871 5 O -0.313 6.313 6 C 0.117 3.883 7 C -0.221 4.221 8 C -0.075 4.075 9 C -0.165 4.165 10 C -0.053 4.053 11 C -0.115 4.115 12 C -0.180 4.180 13 C 0.506 3.494 14 O -0.575 6.575 15 N -0.697 5.697 16 C 0.141 3.859 17 C -0.157 4.157 18 C -0.133 4.133 19 C 0.159 3.841 20 N -0.741 5.741 21 C -0.250 4.250 22 H 0.072 0.928 23 C -0.074 4.074 24 N -0.966 5.966 25 Si 0.975 3.025 26 H -0.269 1.269 27 H -0.291 1.291 28 H -0.288 1.288 29 H 0.042 0.958 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.146 0.854 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.119 0.881 41 H 0.421 0.579 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.156 0.844 45 H 0.127 0.873 46 H 0.025 0.975 47 H 0.030 0.970 48 H 0.376 0.624 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.541 -3.507 5.712 36.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.010 3.990 4 H 0.146 0.854 5 O -0.227 6.227 6 C 0.072 3.928 7 C -0.239 4.239 8 C -0.093 4.093 9 C -0.183 4.183 10 C -0.054 4.054 11 C -0.172 4.172 12 C -0.198 4.198 13 C 0.292 3.708 14 O -0.454 6.454 15 N -0.352 5.352 16 C 0.018 3.982 17 C -0.176 4.176 18 C -0.152 4.152 19 C 0.033 3.967 20 N -0.384 5.384 21 C -0.382 4.382 22 H 0.090 0.910 23 C -0.266 4.266 24 N -0.616 5.616 25 Si 0.803 3.197 26 H -0.194 1.194 27 H -0.218 1.218 28 H -0.215 1.215 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.166 0.834 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.260 0.740 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.174 0.826 45 H 0.145 0.855 46 H 0.042 0.958 47 H 0.048 0.952 48 H 0.208 0.792 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -34.889 -3.060 6.606 35.640 hybrid contribution 1.322 0.230 -0.176 1.353 sum -33.567 -2.830 6.430 34.294 Atomic orbital electron populations 1.21897 0.93227 1.03314 1.02411 1.22026 0.98288 0.91961 1.04775 1.22512 0.90530 0.97195 0.88792 0.85350 1.86187 1.38308 1.63363 1.34821 1.19255 0.85777 0.92412 0.95364 1.21483 0.98817 1.06383 0.97186 1.21290 0.94555 0.94172 0.99278 1.21298 1.01772 1.03174 0.92075 1.20017 0.92837 0.95301 0.97199 1.20869 1.01769 1.01074 0.93443 1.20471 0.98946 1.03557 0.96869 1.20875 0.90534 0.77139 0.82222 1.90752 1.66254 1.47514 1.40848 1.45652 1.07302 1.64117 1.18086 1.20398 0.80001 1.01210 0.96626 1.22774 1.01214 1.00111 0.93504 1.23053 0.96623 0.95687 0.99846 1.20096 0.83631 0.95446 0.97491 1.42468 1.01776 1.20429 1.73694 1.19658 0.89299 0.97259 1.31980 0.90989 1.25595 0.98269 1.00459 1.02318 1.69815 1.11700 1.29749 1.50386 0.85060 0.78687 0.78719 0.77209 1.19361 1.21837 1.21486 0.93914 0.90452 0.90627 0.86847 0.91752 0.83415 0.82925 0.83655 0.89836 0.91587 0.89772 0.86333 0.74039 0.92105 0.91871 0.82648 0.85473 0.95757 0.95222 0.79155 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.48 71.98 0.61 -0.94 16 2 C -0.13 -1.69 5.61 30.59 0.17 -1.51 16 3 C 0.07 1.29 2.57 29.85 0.08 1.37 16 4 H 0.13 1.65 5.31 -2.39 -0.01 1.64 16 5 O -0.31 -8.06 9.20 -73.49 -0.68 -8.73 16 6 C 0.12 2.52 5.27 22.50 0.12 2.63 16 7 C -0.22 -3.39 7.24 22.37 0.16 -3.23 16 8 C -0.08 -0.94 10.04 22.25 0.22 -0.71 16 9 C -0.17 -2.17 9.70 22.28 0.22 -1.95 16 10 C -0.05 -0.86 5.88 -19.88 -0.12 -0.98 16 11 C -0.12 -1.25 10.01 71.24 0.71 -0.53 16 12 C -0.18 -3.80 9.64 22.37 0.22 -3.59 16 13 C 0.51 13.24 7.18 87.66 0.63 13.87 16 14 O -0.58 -22.13 16.51 15.96 0.26 -21.87 16 15 N -0.70 -14.12 5.45 -466.79 -2.54 -16.66 16 16 C 0.14 3.80 5.75 85.63 0.49 4.30 16 17 C -0.16 -3.67 9.63 25.64 0.25 -3.42 16 18 C -0.13 -4.01 9.63 25.64 0.25 -3.77 16 19 C 0.16 6.53 6.34 85.63 0.54 7.07 16 20 N -0.74 -38.91 5.59 -347.19 -1.94 -40.85 16 21 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 22 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.07 -4.36 5.50 84.86 0.47 -3.90 16 24 N -0.97 -59.98 13.06 21.65 0.28 -59.70 16 25 Si 0.97 47.43 29.55 68.60 2.03 49.46 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 28 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 29 H 0.04 0.62 6.31 -2.39 -0.02 0.61 16 30 H 0.08 0.52 6.93 -2.38 -0.02 0.50 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.77 7.77 -2.39 -0.02 0.75 16 33 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.15 1.57 4.69 -2.91 -0.01 1.56 16 35 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 36 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 39 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 40 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 41 H 0.42 4.71 8.17 -92.71 -0.76 3.96 16 42 H 0.06 2.05 5.31 -2.39 -0.01 2.04 16 43 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 44 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 45 H 0.13 3.55 8.06 -2.91 -0.02 3.52 16 46 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.03 1.27 5.31 -2.39 -0.01 1.26 16 48 H 0.38 20.66 7.66 -92.71 -0.71 19.95 16 49 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -80.51 399.91 2.77 -77.73 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: -0.49 Total: 29.60 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 5.86 Total: -8.98 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -4.20 Total: -117.21 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.41 Total: -30.60 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -80.51 2.77 -77.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483070699.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.012 kcal (2) G-P(sol) polarization free energy of solvation -80.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds