Wall clock time and date at job start Tue Mar 31 2020 16:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47077 * 2 1 4 4 N 1.46504 * 109.46882 * 179.97438 * 3 2 1 5 5 C 1.36930 * 120.00075 * 275.30814 * 4 3 2 6 6 H 1.07997 * 120.00072 * 37.57976 * 5 4 3 7 7 C 1.38815 * 119.99966 * 217.58019 * 5 4 3 8 8 N 1.31616 * 120.00059 * 21.42448 * 7 5 4 9 9 Si 1.86804 * 120.00109 * 201.42807 * 7 5 4 10 10 H 1.48497 * 109.47293 * 89.99803 * 9 7 5 11 11 H 1.48497 * 109.46993 * 210.00117 * 9 7 5 12 12 H 1.48499 * 109.46928 * 329.99932 * 9 7 5 13 13 C 1.46502 * 119.99474 * 95.31187 * 4 3 2 14 14 C 1.52998 * 109.46995 * 269.99407 * 13 4 3 15 15 N 1.46503 * 109.47085 * 180.02562 * 14 13 4 16 16 C 1.34777 * 119.99666 * 180.02562 * 15 14 13 17 17 O 1.21550 * 120.00184 * 359.97438 * 16 15 14 18 18 C 1.47849 * 119.99708 * 180.27411 * 16 15 14 19 19 C 1.39467 * 120.01227 * 359.44930 * 18 16 15 20 20 C 1.37937 * 119.69643 * 179.79219 * 19 18 16 21 21 C 1.38211 * 120.05960 * 0.58116 * 20 19 18 22 22 C 1.38755 * 120.60832 * 359.77278 * 21 20 19 23 23 C 1.37665 * 119.86777 * 359.76674 * 22 21 20 24 24 C 1.50717 * 121.42437 * 180.63859 * 23 22 21 25 25 C 1.52969 * 109.77839 * 342.81136 * 24 23 22 26 26 O 1.43214 * 108.47775 * 49.12929 * 25 24 23 27 27 C 1.42715 * 113.13345 * 289.45002 * 26 25 24 28 28 H 1.08997 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47225 * 300.00495 * 1 2 3 30 30 H 1.09000 * 109.46760 * 60.00081 * 1 2 3 31 31 H 1.08998 * 109.47431 * 240.00018 * 2 1 3 32 32 H 1.08995 * 109.47069 * 119.99596 * 2 1 3 33 33 H 1.08998 * 109.46976 * 59.99739 * 3 2 1 34 34 H 1.09000 * 109.47259 * 299.99613 * 3 2 1 35 35 H 0.96998 * 120.00129 * 179.97438 * 8 7 5 36 36 H 1.09008 * 109.47007 * 150.00124 * 13 4 3 37 37 H 1.08997 * 109.47500 * 29.99560 * 13 4 3 38 38 H 1.09001 * 109.46942 * 60.00269 * 14 13 4 39 39 H 1.09001 * 109.47365 * 300.00798 * 14 13 4 40 40 H 0.96994 * 120.00004 * 0.02562 * 15 14 13 41 41 H 1.07995 * 120.14690 * 0.02562 * 19 18 16 42 42 H 1.07998 * 119.97234 * 180.31971 * 20 19 18 43 43 H 1.07994 * 119.69585 * 179.75358 * 21 20 19 44 44 H 1.09006 * 109.42237 * 102.90153 * 24 23 22 45 45 H 1.08997 * 109.42219 * 222.71953 * 24 23 22 46 46 H 1.08992 * 109.63499 * 289.42784 * 25 24 23 47 47 H 1.09008 * 109.80023 * 168.92093 * 25 24 23 48 48 H 1.08997 * 109.33880 * 291.62791 * 27 26 25 49 49 H 1.08996 * 109.33549 * 172.11737 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8169 0.6876 1.9635 7 6 5.3613 2.0514 1.3741 8 7 5.6020 3.1240 0.6502 9 14 6.5969 1.4960 2.6603 10 1 7.5670 0.5571 2.0418 11 1 7.3219 2.6775 3.1928 12 1 5.8838 0.8119 3.7687 13 6 4.2380 1.5597 -1.2625 14 6 4.4932 0.1642 -1.8354 15 7 5.2267 0.2814 -3.0981 16 6 5.5635 -0.8269 -3.7871 17 8 5.2592 -1.9236 -3.3605 18 6 6.3090 -0.7089 -5.0584 19 6 6.6538 0.5496 -5.5507 20 6 7.3531 0.6519 -6.7353 21 6 7.6991 -0.4883 -7.4357 22 6 7.3535 -1.7438 -6.9566 23 6 6.6639 -1.8592 -5.7708 24 6 6.2833 -3.2058 -5.2109 25 6 6.3796 -4.2682 -6.3073 26 8 7.6473 -4.1335 -6.9597 27 6 7.7432 -2.9567 -7.7613 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 6.4208 3.6262 0.7849 36 1 5.1904 2.0593 -1.0848 37 1 3.6492 2.1415 -1.9716 38 1 3.5409 -0.3354 -2.0130 39 1 5.0820 -0.4176 -1.1262 40 1 5.4699 1.1566 -3.4383 41 1 6.3778 1.4397 -5.0051 42 1 7.6269 1.6240 -7.1180 43 1 8.2431 -0.4011 -8.3645 44 1 6.9596 -3.4638 -4.3959 45 1 5.2614 -3.1658 -4.8338 46 1 5.5778 -4.1215 -7.0309 47 1 6.2981 -5.2619 -5.8667 48 1 7.0778 -3.0494 -8.6196 49 1 8.7684 -2.8423 -8.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493304285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:05 Heat of formation + Delta-G solvation = -43.900400 kcal Electronic energy + Delta-G solvation = -28670.772033 eV Core-core repulsion = 24790.985119 eV Total energy + Delta-G solvation = -3879.786914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.77023 -39.01035 -37.48711 -36.51089 -34.47753 -32.95057 -32.87217 -32.04118 -30.82229 -29.88778 -28.00298 -25.77878 -25.58885 -24.37574 -23.72522 -22.86643 -21.01218 -20.64331 -20.18356 -19.80381 -17.74000 -16.70195 -16.65580 -16.18485 -15.96887 -15.45534 -15.35928 -15.18525 -14.87134 -14.40773 -14.33522 -14.04354 -13.89502 -13.49314 -13.32131 -13.02863 -12.83841 -12.66915 -12.55499 -12.49930 -12.02760 -11.82522 -11.60431 -11.59404 -11.51917 -11.20922 -10.95359 -10.77885 -10.77402 -10.44510 -10.38627 -10.11341 -10.04044 -9.90570 -9.70710 -9.24746 -9.03731 -8.80671 -8.57511 -8.44284 -6.65644 -5.86644 -3.45612 0.74817 1.13108 2.93458 3.33539 3.41682 3.43286 3.48527 3.67898 3.77399 4.39790 4.43673 4.53489 4.65483 4.74331 4.91257 5.03066 5.08429 5.10484 5.24104 5.27384 5.34119 5.45541 5.55572 5.61462 5.65124 5.74220 5.75598 5.80798 5.99478 6.08204 6.09008 6.12856 6.18926 6.20267 6.26084 6.39580 6.43563 6.51877 6.60166 6.63673 6.70536 6.84056 6.90061 6.95433 6.98302 7.15957 7.49723 7.77747 7.86635 8.44449 8.51013 9.11408 9.73237 10.31019 11.13394 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.002954 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.634091 B = 9474.883275 C =10269.492090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.276 1.276 13 C 0.137 3.863 14 C 0.097 3.903 15 N -0.713 5.713 16 C 0.549 3.451 17 O -0.539 6.539 18 C -0.130 4.130 19 C -0.081 4.081 20 C -0.130 4.130 21 C -0.090 4.090 22 C -0.137 4.137 23 C -0.013 4.013 24 C -0.120 4.120 25 C 0.055 3.945 26 O -0.378 6.378 27 C 0.105 3.895 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.028 0.972 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.396 0.604 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.126 0.874 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.053 0.947 47 H 0.100 0.900 48 H 0.064 0.936 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.216 -6.453 -17.943 19.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.009 3.991 14 C -0.028 4.028 15 N -0.364 5.364 16 C 0.336 3.664 17 O -0.419 6.419 18 C -0.133 4.133 19 C -0.100 4.100 20 C -0.148 4.148 21 C -0.108 4.108 22 C -0.137 4.137 23 C -0.014 4.014 24 C -0.156 4.156 25 C -0.022 4.022 26 O -0.296 6.296 27 C 0.028 3.972 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.230 0.770 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.144 0.856 44 H 0.109 0.891 45 H 0.134 0.866 46 H 0.071 0.929 47 H 0.118 0.882 48 H 0.082 0.918 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.244 -7.195 -17.527 18.987 hybrid contribution 0.687 0.539 0.468 0.991 sum 1.931 -6.655 -17.059 18.413 Atomic orbital electron populations 1.21721 0.97334 1.00408 1.00997 1.22184 0.93811 1.00929 1.01572 1.20942 0.85029 0.92984 0.98924 1.43597 0.99435 1.84810 1.02042 1.19035 1.05683 1.20437 0.93944 0.92012 1.25177 1.00795 0.94501 0.98117 1.69989 1.25640 1.14759 1.42546 0.86393 0.81648 0.77905 0.81492 1.21209 1.21680 1.20116 1.21061 1.00344 0.91161 0.86485 1.22504 0.94834 1.02897 0.82527 1.46093 1.57456 1.08320 1.24493 1.18236 0.79497 0.84792 0.83881 1.90690 1.55802 1.25981 1.69388 1.20022 1.02886 0.93695 0.96735 1.21378 0.96268 0.96525 0.95845 1.21015 0.99628 0.98739 0.95460 1.21131 0.98595 0.91616 0.99504 1.20217 1.00814 0.96109 0.96577 1.19571 0.94042 0.95014 0.92761 1.21455 1.05802 0.90206 0.98151 1.22821 0.85225 0.99940 0.94178 1.88059 1.35467 1.41456 1.64647 1.21371 1.02158 0.81950 0.91674 0.93803 0.93190 0.93488 0.92954 0.92343 0.93555 0.94768 0.93507 0.88389 0.95331 0.92825 0.91589 0.76961 0.85173 0.85211 0.85563 0.89129 0.86565 0.92865 0.88182 0.91823 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 37.16 0.37 -1.79 16 2 C -0.15 -2.63 6.23 -26.73 -0.17 -2.80 16 3 C 0.15 3.03 5.72 -4.04 -0.02 3.00 16 4 N -0.58 -13.81 2.43 -173.23 -0.42 -14.23 16 5 C -0.26 -6.93 9.45 -15.06 -0.14 -7.07 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.24 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -24.46 11.47 55.49 0.64 -23.83 16 9 Si 0.90 21.33 29.61 -169.99 -5.03 16.29 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.14 2.99 5.45 -4.04 -0.02 2.97 16 14 C 0.10 1.95 6.00 -4.04 -0.02 1.93 16 15 N -0.71 -12.02 5.51 -61.25 -0.34 -12.35 16 16 C 0.55 9.41 7.73 -12.33 -0.10 9.31 16 17 O -0.54 -10.60 13.17 5.32 0.07 -10.53 16 18 C -0.13 -1.86 5.88 -104.89 -0.62 -2.48 16 19 C -0.08 -0.95 9.54 -39.23 -0.37 -1.33 16 20 C -0.13 -1.27 10.03 -39.70 -0.40 -1.67 16 21 C -0.09 -0.85 9.66 -39.40 -0.38 -1.23 16 22 C -0.14 -1.54 5.80 -104.65 -0.61 -2.14 16 23 C -0.01 -0.17 5.81 -104.21 -0.61 -0.78 16 24 C -0.12 -1.61 4.55 -27.89 -0.13 -1.74 16 25 C 0.05 0.59 6.85 37.14 0.25 0.85 16 26 O -0.38 -4.45 10.80 -35.23 -0.38 -4.83 16 27 C 0.11 0.99 6.66 36.00 0.24 1.23 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.97 6.64 -51.93 -0.34 0.63 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 35 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 36 H 0.10 2.41 5.52 -51.92 -0.29 2.12 16 37 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 38 H 0.05 1.09 6.64 -51.93 -0.34 0.74 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.40 5.69 6.50 -40.82 -0.27 5.42 16 41 H 0.13 1.31 6.39 -52.49 -0.34 0.97 16 42 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 44 H 0.09 1.35 8.10 -51.93 -0.42 0.92 16 45 H 0.12 1.73 5.99 -51.93 -0.31 1.42 16 46 H 0.05 0.51 8.07 -51.93 -0.42 0.09 16 47 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -30.67 389.64 -10.14 -40.81 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.74 Total: 6.21 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.81 Total: -3.42 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.12 Total: -50.41 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.31 Total: -15.36 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.67 -10.14 -40.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493304285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.088 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds