Wall clock time and date at job start Tue Mar 31 2020 16:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47077 * 2 1 4 4 N 1.46504 * 109.46882 * 179.97438 * 3 2 1 5 5 C 1.36930 * 120.00075 * 275.30814 * 4 3 2 6 6 H 1.07997 * 120.00072 * 37.57976 * 5 4 3 7 7 C 1.38815 * 119.99966 * 217.58019 * 5 4 3 8 8 N 1.31616 * 120.00059 * 21.42448 * 7 5 4 9 9 Si 1.86804 * 120.00109 * 201.42807 * 7 5 4 10 10 H 1.48497 * 109.47293 * 89.99803 * 9 7 5 11 11 H 1.48497 * 109.46993 * 210.00117 * 9 7 5 12 12 H 1.48499 * 109.46928 * 329.99932 * 9 7 5 13 13 C 1.46502 * 119.99474 * 95.31187 * 4 3 2 14 14 C 1.52998 * 109.46995 * 269.99407 * 13 4 3 15 15 N 1.46503 * 109.47085 * 180.02562 * 14 13 4 16 16 C 1.34777 * 119.99666 * 180.02562 * 15 14 13 17 17 O 1.21550 * 120.00184 * 359.97438 * 16 15 14 18 18 C 1.47849 * 119.99708 * 180.27411 * 16 15 14 19 19 C 1.39467 * 120.01227 * 359.44930 * 18 16 15 20 20 C 1.37937 * 119.69643 * 179.79219 * 19 18 16 21 21 C 1.38211 * 120.05960 * 0.58116 * 20 19 18 22 22 C 1.38755 * 120.60832 * 359.77278 * 21 20 19 23 23 C 1.37665 * 119.86777 * 359.76674 * 22 21 20 24 24 C 1.50717 * 121.42437 * 180.63859 * 23 22 21 25 25 C 1.52969 * 109.77839 * 342.81136 * 24 23 22 26 26 O 1.43214 * 108.47775 * 49.12929 * 25 24 23 27 27 C 1.42715 * 113.13345 * 289.45002 * 26 25 24 28 28 H 1.08997 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47225 * 300.00495 * 1 2 3 30 30 H 1.09000 * 109.46760 * 60.00081 * 1 2 3 31 31 H 1.08998 * 109.47431 * 240.00018 * 2 1 3 32 32 H 1.08995 * 109.47069 * 119.99596 * 2 1 3 33 33 H 1.08998 * 109.46976 * 59.99739 * 3 2 1 34 34 H 1.09000 * 109.47259 * 299.99613 * 3 2 1 35 35 H 0.96998 * 120.00129 * 179.97438 * 8 7 5 36 36 H 1.09008 * 109.47007 * 150.00124 * 13 4 3 37 37 H 1.08997 * 109.47500 * 29.99560 * 13 4 3 38 38 H 1.09001 * 109.46942 * 60.00269 * 14 13 4 39 39 H 1.09001 * 109.47365 * 300.00798 * 14 13 4 40 40 H 0.96994 * 120.00004 * 0.02562 * 15 14 13 41 41 H 1.07995 * 120.14690 * 0.02562 * 19 18 16 42 42 H 1.07998 * 119.97234 * 180.31971 * 20 19 18 43 43 H 1.07994 * 119.69585 * 179.75358 * 21 20 19 44 44 H 1.09006 * 109.42237 * 102.90153 * 24 23 22 45 45 H 1.08997 * 109.42219 * 222.71953 * 24 23 22 46 46 H 1.08992 * 109.63499 * 289.42784 * 25 24 23 47 47 H 1.09008 * 109.80023 * 168.92093 * 25 24 23 48 48 H 1.08997 * 109.33880 * 291.62791 * 27 26 25 49 49 H 1.08996 * 109.33549 * 172.11737 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.3329 1.1817 6 1 3.8169 0.6876 1.9635 7 6 5.3613 2.0514 1.3741 8 7 5.6020 3.1240 0.6502 9 14 6.5969 1.4960 2.6603 10 1 7.5670 0.5571 2.0418 11 1 7.3219 2.6775 3.1928 12 1 5.8838 0.8119 3.7687 13 6 4.2380 1.5597 -1.2625 14 6 4.4932 0.1642 -1.8354 15 7 5.2267 0.2814 -3.0981 16 6 5.5635 -0.8269 -3.7871 17 8 5.2592 -1.9236 -3.3605 18 6 6.3090 -0.7089 -5.0584 19 6 6.6538 0.5496 -5.5507 20 6 7.3531 0.6519 -6.7353 21 6 7.6991 -0.4883 -7.4357 22 6 7.3535 -1.7438 -6.9566 23 6 6.6639 -1.8592 -5.7708 24 6 6.2833 -3.2058 -5.2109 25 6 6.3796 -4.2682 -6.3073 26 8 7.6473 -4.1335 -6.9597 27 6 7.7432 -2.9567 -7.7613 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 6.4208 3.6262 0.7849 36 1 5.1904 2.0593 -1.0848 37 1 3.6492 2.1415 -1.9716 38 1 3.5409 -0.3354 -2.0130 39 1 5.0820 -0.4176 -1.1262 40 1 5.4699 1.1566 -3.4383 41 1 6.3778 1.4397 -5.0051 42 1 7.6269 1.6240 -7.1180 43 1 8.2431 -0.4011 -8.3645 44 1 6.9596 -3.4638 -4.3959 45 1 5.2614 -3.1658 -4.8338 46 1 5.5778 -4.1215 -7.0309 47 1 6.2981 -5.2619 -5.8667 48 1 7.0778 -3.0494 -8.6196 49 1 8.7684 -2.8423 -8.1132 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493304285.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:04 Heat of formation + Delta-G solvation = -61.739669 kcal Electronic energy + Delta-G solvation = -28671.545602 eV Core-core repulsion = 24790.985119 eV Total energy + Delta-G solvation = -3880.560483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78471 -40.20690 -38.44682 -38.20252 -35.95057 -34.63644 -33.84576 -33.12720 -32.45839 -30.91611 -29.51494 -27.36228 -26.58010 -25.72775 -24.70307 -24.19994 -22.63221 -21.96647 -21.60083 -20.91107 -19.01148 -18.40029 -17.61225 -17.23171 -16.99564 -16.92207 -16.61904 -16.44684 -16.19979 -15.93977 -15.64704 -15.46613 -15.03310 -14.74269 -14.65314 -14.38406 -14.25521 -14.04471 -13.64367 -13.36565 -13.30923 -13.10982 -12.97170 -12.89804 -12.74170 -12.65216 -12.54575 -12.44769 -12.21219 -12.05056 -11.89356 -11.71567 -11.62749 -11.33546 -11.04078 -10.56232 -10.43605 -10.18720 -9.77474 -9.65648 -8.61990 -7.88497 -5.51426 -0.20495 0.26789 1.41182 1.45775 1.52016 1.79954 2.11431 2.47822 2.73778 2.90749 3.19006 3.56182 3.62108 3.67241 3.77690 3.90214 4.03570 4.18609 4.19776 4.28882 4.33408 4.35298 4.38607 4.46652 4.52156 4.55978 4.65881 4.69037 4.77379 4.78721 4.80610 4.83878 4.93231 4.97301 5.08097 5.13585 5.20827 5.24712 5.29161 5.36099 5.37674 5.41940 5.52680 5.60895 5.63165 5.70784 5.87010 6.10353 6.41836 6.52980 7.11130 7.17485 7.79803 8.32049 9.07245 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012350 B = 0.002954 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2266.634091 B = 9474.883275 C =10269.492090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.271 4.271 6 H 0.051 0.949 7 C -0.026 4.026 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.292 1.292 11 H -0.287 1.287 12 H -0.271 1.271 13 C 0.146 3.854 14 C 0.121 3.879 15 N -0.709 5.709 16 C 0.545 3.455 17 O -0.574 6.574 18 C -0.157 4.157 19 C -0.086 4.086 20 C -0.125 4.125 21 C -0.077 4.077 22 C -0.142 4.142 23 C -0.037 4.037 24 C -0.116 4.116 25 C 0.061 3.939 26 O -0.394 6.394 27 C 0.100 3.900 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.050 0.950 35 H 0.254 0.746 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.029 0.971 40 H 0.409 0.591 41 H 0.141 0.859 42 H 0.164 0.836 43 H 0.168 0.832 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.068 0.932 47 H 0.110 0.890 48 H 0.087 0.913 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.685 -5.999 -20.770 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.401 4.401 6 H 0.069 0.931 7 C -0.224 4.224 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.219 1.219 11 H -0.213 1.213 12 H -0.196 1.196 13 C 0.018 3.982 14 C -0.005 4.005 15 N -0.360 5.360 16 C 0.334 3.666 17 O -0.456 6.456 18 C -0.160 4.160 19 C -0.105 4.105 20 C -0.143 4.143 21 C -0.094 4.094 22 C -0.142 4.142 23 C -0.038 4.038 24 C -0.153 4.153 25 C -0.015 4.015 26 O -0.313 6.313 27 C 0.024 3.976 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.246 0.754 41 H 0.159 0.841 42 H 0.182 0.818 43 H 0.185 0.815 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.086 0.914 47 H 0.128 0.872 48 H 0.105 0.895 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.702 -6.729 -20.371 21.521 hybrid contribution 0.548 0.414 1.256 1.432 sum 2.250 -6.315 -19.116 20.257 Atomic orbital electron populations 1.21652 0.94197 1.01787 1.02027 1.22013 0.96467 0.98770 1.00200 1.21057 0.83269 0.94534 0.99127 1.43828 1.00885 1.85060 1.01909 1.19156 1.06305 1.19928 0.94697 0.93086 1.25726 1.02021 0.94698 0.99978 1.70071 1.25891 1.15459 1.43800 0.85568 0.79640 0.77309 0.79764 1.21868 1.21348 1.19586 1.20916 0.99240 0.91757 0.86259 1.21954 0.94261 1.01119 0.83151 1.45910 1.57397 1.09269 1.23438 1.18815 0.79003 0.84020 0.84754 1.90672 1.57145 1.27197 1.70548 1.19864 1.04766 0.95467 0.95872 1.21597 0.96380 0.95650 0.96882 1.21446 0.98051 1.00576 0.94226 1.21621 0.97017 0.90438 1.00369 1.20535 1.00036 0.97972 0.95691 1.19723 0.95520 0.94424 0.94182 1.21296 1.03692 0.91895 0.98441 1.22792 0.85654 0.99420 0.93670 1.88033 1.35682 1.42601 1.65002 1.21685 1.04164 0.80290 0.91510 0.92282 0.92541 0.92071 0.93710 0.94340 0.94549 0.93194 0.93663 0.90836 0.93660 0.93168 0.95260 0.75438 0.84136 0.81826 0.81496 0.91840 0.88835 0.91354 0.87195 0.89548 0.85420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 9.91 71.98 0.71 -3.14 16 2 C -0.13 -4.89 6.23 30.60 0.19 -4.70 16 3 C 0.15 6.00 5.72 86.38 0.49 6.49 16 4 N -0.60 -29.09 2.43 -701.98 -1.71 -30.80 16 5 C -0.27 -14.73 9.45 84.04 0.79 -13.94 16 6 H 0.05 2.83 7.92 -2.91 -0.02 2.81 16 7 C -0.03 -1.42 4.95 84.86 0.42 -1.00 16 8 N -0.91 -50.95 11.47 21.65 0.25 -50.70 16 9 Si 0.95 44.71 29.61 68.60 2.03 46.74 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 C 0.15 6.50 5.45 86.38 0.47 6.97 16 14 C 0.12 5.08 6.00 86.38 0.52 5.60 16 15 N -0.71 -24.73 5.51 -465.96 -2.57 -27.30 16 16 C 0.54 19.59 7.73 86.79 0.67 20.26 16 17 O -0.57 -24.21 13.17 -3.87 -0.05 -24.26 16 18 C -0.16 -4.52 5.88 -20.04 -0.12 -4.64 16 19 C -0.09 -1.89 9.54 22.49 0.21 -1.67 16 20 C -0.13 -1.98 10.03 22.19 0.22 -1.75 16 21 C -0.08 -1.12 9.66 22.39 0.22 -0.90 16 22 C -0.14 -2.84 5.80 -19.88 -0.12 -2.96 16 23 C -0.04 -1.02 5.81 -19.60 -0.11 -1.13 16 24 C -0.12 -3.31 4.55 29.84 0.14 -3.17 16 25 C 0.06 1.30 6.85 71.97 0.49 1.80 16 26 O -0.39 -8.68 10.80 -148.98 -1.61 -10.29 16 27 C 0.10 1.57 6.66 71.23 0.47 2.04 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.68 6.64 -2.39 -0.02 1.66 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 34 H 0.05 1.88 7.83 -2.39 -0.02 1.86 16 35 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.07 3.72 5.52 -2.38 -0.01 3.70 16 37 H 0.05 1.84 7.86 -2.39 -0.02 1.82 16 38 H 0.05 2.12 6.64 -2.39 -0.02 2.11 16 39 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.41 11.91 6.50 -92.71 -0.60 11.31 16 41 H 0.14 2.63 6.39 -2.91 -0.02 2.61 16 42 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 44 H 0.06 2.07 8.10 -2.38 -0.02 2.05 16 45 H 0.09 3.04 5.99 -2.39 -0.01 3.02 16 46 H 0.07 1.24 8.07 -2.39 -0.02 1.22 16 47 H 0.11 2.04 8.14 -2.38 -0.02 2.02 16 48 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -69.44 389.64 2.38 -67.06 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.35 Total: 25.39 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 5.68 Total: 4.15 kcal Atomic # 7 Polarization: -104.77 SS G_CDS: -4.03 Total: -108.79 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -1.66 Total: -34.55 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -69.44 2.38 -67.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493304285.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.319 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds