Wall clock time and date at job start Tue Mar 31 2020 16:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46962 * 2 1 4 4 N 1.46498 * 109.47372 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99252 * 275.30787 * 4 3 2 6 6 H 1.07998 * 120.00076 * 37.57436 * 5 4 3 7 7 C 1.38809 * 119.99717 * 217.57364 * 5 4 3 8 8 N 1.31622 * 119.99918 * 21.43539 * 7 5 4 9 9 Si 1.86798 * 120.00126 * 201.43209 * 7 5 4 10 10 H 1.48493 * 109.47107 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47121 * 120.00278 * 9 7 5 12 12 H 1.48500 * 109.47407 * 240.00182 * 9 7 5 13 13 C 1.46496 * 120.00680 * 95.30558 * 4 3 2 14 14 C 1.53001 * 109.47155 * 270.00381 * 13 4 3 15 15 N 1.46496 * 109.47155 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00203 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99591 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00230 * 179.97438 * 16 15 14 19 19 C 1.50700 * 109.47362 * 180.02562 * 18 16 15 20 20 C 1.38266 * 119.97330 * 270.01995 * 19 18 16 21 21 C 1.38300 * 120.03764 * 179.97438 * 20 19 18 22 22 C 1.37834 * 119.97287 * 359.96924 * 21 20 19 23 23 C 1.38776 * 120.00557 * 0.02562 * 22 21 20 24 24 C 1.37961 * 120.01957 * 0.02562 * 23 22 21 25 25 C 1.51082 * 107.29071 * 180.02562 * 23 22 21 26 26 O 1.43942 * 105.95845 * 342.32522 * 25 23 22 27 27 C 1.43950 * 104.94749 * 28.44502 * 26 25 23 28 28 H 1.08995 * 109.47086 * 60.00740 * 1 2 3 29 29 H 1.08996 * 109.46541 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47317 * 299.99965 * 1 2 3 31 31 H 1.08995 * 109.47317 * 240.00035 * 2 1 3 32 32 H 1.08997 * 109.47423 * 119.99667 * 2 1 3 33 33 H 1.09000 * 109.47611 * 59.99420 * 3 2 1 34 34 H 1.09004 * 109.47061 * 299.99850 * 3 2 1 35 35 H 0.97003 * 119.99739 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47482 * 149.99878 * 13 4 3 37 37 H 1.09001 * 109.46772 * 30.00352 * 13 4 3 38 38 H 1.08997 * 109.46828 * 59.99366 * 14 13 4 39 39 H 1.09003 * 109.46521 * 299.99749 * 14 13 4 40 40 H 0.97006 * 119.99972 * 359.97438 * 15 14 13 41 41 H 1.08995 * 109.47431 * 59.99545 * 18 16 15 42 42 H 1.09008 * 109.46804 * 299.99596 * 18 16 15 43 43 H 1.07994 * 119.98125 * 359.97438 * 20 19 18 44 44 H 1.08002 * 120.03498 * 179.97438 * 21 20 19 45 45 H 1.08006 * 120.03820 * 179.97438 * 24 23 22 46 46 H 1.09003 * 110.15336 * 223.20839 * 25 23 22 47 47 H 1.08996 * 110.16034 * 101.44642 * 25 23 22 48 48 H 1.08996 * 110.15002 * 90.68720 * 27 26 25 49 49 H 1.09002 * 110.14885 * 212.36461 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.3328 1.1800 6 1 3.8184 0.6872 1.9620 7 6 5.3622 2.0512 1.3717 8 7 5.6023 3.1241 0.6480 9 14 6.5988 1.4955 2.6567 10 1 6.0967 0.2707 3.3297 11 1 7.8976 1.2015 1.9994 12 1 6.7855 2.5721 3.6623 13 6 4.2371 1.5602 -1.2641 14 6 4.4919 0.1648 -1.8376 15 7 5.2235 0.2824 -3.1014 16 6 5.5606 -0.8257 -3.7905 17 8 5.2586 -1.9202 -3.3641 18 6 6.3126 -0.7047 -5.0908 19 6 6.5637 -2.0791 -5.6557 20 6 7.7166 -2.7642 -5.3191 21 6 7.9481 -4.0258 -5.8363 22 6 7.0287 -4.6006 -6.6872 23 6 5.8715 -3.9133 -7.0252 24 6 5.6410 -2.6544 -6.5101 25 6 5.0802 -4.7984 -7.9596 26 8 6.0072 -5.7838 -8.4510 27 6 6.9837 -5.9299 -7.4035 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9565 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 6.4213 3.6263 0.7822 36 1 5.1895 2.0598 -1.0871 37 1 3.6477 2.1422 -1.9726 38 1 3.5394 -0.3347 -2.0145 39 1 5.0813 -0.4171 -1.1289 40 1 5.4653 1.1578 -3.4422 41 1 7.2647 -0.2043 -4.9147 42 1 5.7222 -0.1235 -5.7992 43 1 8.4366 -2.3139 -4.6519 44 1 8.8489 -4.5607 -5.5736 45 1 4.7406 -2.1190 -6.7732 46 1 4.6831 -4.2107 -8.7873 47 1 4.2677 -5.2838 -7.4191 48 1 6.6801 -6.7179 -6.7144 49 1 7.9601 -6.1601 -7.8299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493330990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:26 Heat of formation + Delta-G solvation = -41.217778 kcal Electronic energy + Delta-G solvation = -27890.391803 eV Core-core repulsion = 24010.721216 eV Total energy + Delta-G solvation = -3879.670587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.88936 -39.40590 -37.59451 -36.47747 -34.22451 -32.98516 -32.86452 -31.67793 -30.86101 -29.40624 -28.14808 -27.04095 -25.59115 -24.48315 -23.33878 -21.91438 -21.42495 -20.83737 -20.31607 -19.83386 -17.12480 -16.83591 -16.63214 -16.37133 -16.33364 -15.80588 -15.25141 -15.02905 -14.73179 -14.47077 -14.27172 -14.08575 -13.80070 -13.49096 -13.33505 -13.04524 -12.87639 -12.80468 -12.73396 -12.66498 -12.13464 -11.95988 -11.60766 -11.53866 -11.49752 -11.20866 -11.02517 -10.97156 -10.77312 -10.45103 -10.39144 -10.30172 -10.10735 -9.89758 -9.78487 -9.54118 -8.99269 -8.60320 -8.59774 -8.47190 -6.65672 -5.87306 -3.45949 1.03559 1.19611 2.92795 3.29658 3.33910 3.40355 3.44419 3.66421 3.75777 3.97965 4.39596 4.43404 4.58696 4.72826 4.97588 5.08462 5.11376 5.12655 5.19357 5.24137 5.28224 5.30914 5.37580 5.45719 5.47857 5.64703 5.71951 5.74323 5.88682 6.00151 6.08605 6.09256 6.13684 6.20364 6.25896 6.38552 6.40127 6.46959 6.51470 6.60082 6.63813 6.75788 6.86022 6.95271 6.99174 7.15897 7.50356 7.77216 7.90243 8.44230 8.56950 9.11018 9.72843 10.30611 11.12655 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.002468 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.427311 B =11344.520827 C =12506.665884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.580 5.580 5 C -0.259 4.259 6 H 0.062 0.938 7 C 0.013 3.987 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.138 3.862 14 C 0.098 3.902 15 N -0.721 5.721 16 C 0.507 3.493 17 O -0.540 6.540 18 C -0.105 4.105 19 C -0.052 4.052 20 C -0.099 4.099 21 C -0.091 4.091 22 C -0.138 4.138 23 C -0.133 4.133 24 C -0.078 4.078 25 C 0.092 3.908 26 O -0.364 6.364 27 C 0.092 3.908 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.254 0.746 36 H 0.098 0.902 37 H 0.028 0.972 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.397 0.603 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 -9.301 -16.654 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.300 5.300 5 C -0.389 4.389 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.010 3.990 14 C -0.027 4.027 15 N -0.372 5.372 16 C 0.292 3.708 17 O -0.417 6.417 18 C -0.146 4.146 19 C -0.052 4.052 20 C -0.117 4.117 21 C -0.109 4.109 22 C -0.138 4.138 23 C -0.134 4.134 24 C -0.096 4.096 25 C 0.016 3.984 26 O -0.282 6.282 27 C 0.016 3.984 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.116 0.884 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.231 0.769 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.146 0.854 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.114 0.886 47 H 0.095 0.905 48 H 0.094 0.906 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.450 -10.054 -16.496 19.372 hybrid contribution 0.839 0.264 0.817 1.200 sum 2.289 -9.790 -15.678 18.625 Atomic orbital electron populations 1.21720 0.97327 1.00410 1.00998 1.22186 0.93817 1.00942 1.01569 1.20937 0.85054 0.92958 0.98907 1.43618 0.99448 1.84812 1.02109 1.19058 1.05571 1.20302 0.93946 0.92048 1.25181 1.00840 0.94568 0.98140 1.70006 1.25615 1.14816 1.42524 0.86342 0.81477 0.78473 0.81212 1.19972 1.21406 1.21565 1.21058 1.00310 0.91215 0.86408 1.22447 0.94824 1.02695 0.82769 1.46147 1.58052 1.08423 1.24593 1.20394 0.79989 0.84812 0.85617 1.90715 1.54649 1.26582 1.69795 1.20721 1.02524 0.95408 0.95900 1.19268 0.94386 0.95424 0.96132 1.20995 0.97333 0.94510 0.98857 1.20270 0.98669 0.95108 0.96875 1.20985 0.96251 0.96785 0.99819 1.20967 0.96607 0.95525 1.00271 1.20174 0.98785 0.93623 0.97061 1.21733 0.91670 0.88538 0.96463 1.89062 1.39459 1.60161 1.39559 1.21717 0.93706 0.93717 0.89239 0.93471 0.93812 0.93190 0.92966 0.92365 0.93576 0.94774 0.93581 0.88394 0.95347 0.93094 0.91861 0.76933 0.87793 0.87955 0.85438 0.85732 0.85834 0.88558 0.90466 0.90581 0.88654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.15 -2.65 6.23 -26.73 -0.17 -2.81 16 3 C 0.15 3.03 5.72 -4.04 -0.02 3.01 16 4 N -0.58 -13.81 2.43 -173.24 -0.42 -14.23 16 5 C -0.26 -6.85 9.45 -15.06 -0.14 -6.99 16 6 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 7 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 8 N -0.89 -24.32 11.47 55.49 0.64 -23.68 16 9 Si 0.90 21.14 29.60 -169.99 -5.03 16.11 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.14 2.98 5.45 -4.04 -0.02 2.95 16 14 C 0.10 1.94 6.00 -4.04 -0.02 1.91 16 15 N -0.72 -11.37 5.56 -60.30 -0.33 -11.71 16 16 C 0.51 7.95 7.82 -10.99 -0.09 7.86 16 17 O -0.54 -10.86 16.03 5.56 0.09 -10.77 16 18 C -0.11 -1.15 5.83 -29.04 -0.17 -1.32 16 19 C -0.05 -0.63 4.38 -104.59 -0.46 -1.08 16 20 C -0.10 -1.16 9.70 -39.55 -0.38 -1.55 16 21 C -0.09 -1.00 10.03 -39.71 -0.40 -1.39 16 22 C -0.14 -1.56 6.33 -104.39 -0.66 -2.22 16 23 C -0.13 -1.55 6.33 -104.34 -0.66 -2.21 16 24 C -0.08 -0.92 9.70 -39.66 -0.38 -1.31 16 25 C 0.09 0.91 7.63 36.19 0.28 1.18 16 26 O -0.36 -4.03 11.72 -35.23 -0.41 -4.44 16 27 C 0.09 0.88 7.62 36.19 0.28 1.15 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.98 6.64 -51.93 -0.34 0.64 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 34 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 35 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 36 H 0.10 2.38 5.52 -51.93 -0.29 2.09 16 37 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 38 H 0.05 1.04 6.64 -51.93 -0.34 0.70 16 39 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 40 H 0.40 5.13 8.47 -40.82 -0.35 4.79 16 41 H 0.10 0.92 8.09 -51.93 -0.42 0.50 16 42 H 0.10 0.85 8.09 -51.92 -0.42 0.43 16 43 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -32.12 402.12 -10.18 -42.30 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.02 Total: 4.72 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.74 Total: -4.35 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.12 Total: -49.62 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.32 Total: -15.21 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.12 -10.18 -42.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493330990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.080 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds