Wall clock time and date at job start Tue Mar 31 2020 16:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46962 * 2 1 4 4 N 1.46498 * 109.47372 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99252 * 275.30787 * 4 3 2 6 6 H 1.07998 * 120.00076 * 37.57436 * 5 4 3 7 7 C 1.38809 * 119.99717 * 217.57364 * 5 4 3 8 8 N 1.31622 * 119.99918 * 21.43539 * 7 5 4 9 9 Si 1.86798 * 120.00126 * 201.43209 * 7 5 4 10 10 H 1.48493 * 109.47107 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.47121 * 120.00278 * 9 7 5 12 12 H 1.48500 * 109.47407 * 240.00182 * 9 7 5 13 13 C 1.46496 * 120.00680 * 95.30558 * 4 3 2 14 14 C 1.53001 * 109.47155 * 270.00381 * 13 4 3 15 15 N 1.46496 * 109.47155 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00203 * 179.97438 * 15 14 13 17 17 O 1.21283 * 119.99591 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00230 * 179.97438 * 16 15 14 19 19 C 1.50700 * 109.47362 * 180.02562 * 18 16 15 20 20 C 1.38266 * 119.97330 * 270.01995 * 19 18 16 21 21 C 1.38300 * 120.03764 * 179.97438 * 20 19 18 22 22 C 1.37834 * 119.97287 * 359.96924 * 21 20 19 23 23 C 1.38776 * 120.00557 * 0.02562 * 22 21 20 24 24 C 1.37961 * 120.01957 * 0.02562 * 23 22 21 25 25 C 1.51082 * 107.29071 * 180.02562 * 23 22 21 26 26 O 1.43942 * 105.95845 * 342.32522 * 25 23 22 27 27 C 1.43950 * 104.94749 * 28.44502 * 26 25 23 28 28 H 1.08995 * 109.47086 * 60.00740 * 1 2 3 29 29 H 1.08996 * 109.46541 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47317 * 299.99965 * 1 2 3 31 31 H 1.08995 * 109.47317 * 240.00035 * 2 1 3 32 32 H 1.08997 * 109.47423 * 119.99667 * 2 1 3 33 33 H 1.09000 * 109.47611 * 59.99420 * 3 2 1 34 34 H 1.09004 * 109.47061 * 299.99850 * 3 2 1 35 35 H 0.97003 * 119.99739 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47482 * 149.99878 * 13 4 3 37 37 H 1.09001 * 109.46772 * 30.00352 * 13 4 3 38 38 H 1.08997 * 109.46828 * 59.99366 * 14 13 4 39 39 H 1.09003 * 109.46521 * 299.99749 * 14 13 4 40 40 H 0.97006 * 119.99972 * 359.97438 * 15 14 13 41 41 H 1.08995 * 109.47431 * 59.99545 * 18 16 15 42 42 H 1.09008 * 109.46804 * 299.99596 * 18 16 15 43 43 H 1.07994 * 119.98125 * 359.97438 * 20 19 18 44 44 H 1.08002 * 120.03498 * 179.97438 * 21 20 19 45 45 H 1.08006 * 120.03820 * 179.97438 * 24 23 22 46 46 H 1.09003 * 110.15336 * 223.20839 * 25 23 22 47 47 H 1.08996 * 110.16034 * 101.44642 * 25 23 22 48 48 H 1.08996 * 110.15002 * 90.68720 * 27 26 25 49 49 H 1.09002 * 110.14885 * 212.36461 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1901 1.3328 1.1800 6 1 3.8184 0.6872 1.9620 7 6 5.3622 2.0512 1.3717 8 7 5.6023 3.1241 0.6480 9 14 6.5988 1.4955 2.6567 10 1 6.0967 0.2707 3.3297 11 1 7.8976 1.2015 1.9994 12 1 6.7855 2.5721 3.6623 13 6 4.2371 1.5602 -1.2641 14 6 4.4919 0.1648 -1.8376 15 7 5.2235 0.2824 -3.1014 16 6 5.5606 -0.8257 -3.7905 17 8 5.2586 -1.9202 -3.3641 18 6 6.3126 -0.7047 -5.0908 19 6 6.5637 -2.0791 -5.6557 20 6 7.7166 -2.7642 -5.3191 21 6 7.9481 -4.0258 -5.8363 22 6 7.0287 -4.6006 -6.6872 23 6 5.8715 -3.9133 -7.0252 24 6 5.6410 -2.6544 -6.5101 25 6 5.0802 -4.7984 -7.9596 26 8 6.0072 -5.7838 -8.4510 27 6 6.9837 -5.9299 -7.4035 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6766 1.9565 0.8899 34 1 1.6767 1.9564 -0.8900 35 1 6.4213 3.6263 0.7822 36 1 5.1895 2.0598 -1.0871 37 1 3.6477 2.1422 -1.9726 38 1 3.5394 -0.3347 -2.0145 39 1 5.0813 -0.4171 -1.1289 40 1 5.4653 1.1578 -3.4422 41 1 7.2647 -0.2043 -4.9147 42 1 5.7222 -0.1235 -5.7992 43 1 8.4366 -2.3139 -4.6519 44 1 8.8489 -4.5607 -5.5736 45 1 4.7406 -2.1190 -6.7732 46 1 4.6831 -4.2107 -8.7873 47 1 4.2677 -5.2838 -7.4191 48 1 6.6801 -6.7179 -6.7144 49 1 7.9601 -6.1601 -7.8299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493330990.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:25 Heat of formation + Delta-G solvation = -60.227251 kcal Electronic energy + Delta-G solvation = -27891.216115 eV Core-core repulsion = 24010.721216 eV Total energy + Delta-G solvation = -3880.494900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.71218 -40.64740 -38.56354 -38.11999 -35.69101 -34.61270 -33.86495 -32.61463 -32.48059 -30.55538 -29.31113 -28.03898 -27.35116 -25.51425 -24.77384 -22.74391 -22.69929 -22.20678 -21.84249 -21.09981 -18.77362 -17.89148 -17.65008 -17.39174 -17.25699 -17.03284 -16.75922 -16.46639 -16.09665 -15.70241 -15.64392 -15.24134 -14.90992 -14.81283 -14.63173 -14.34015 -14.28557 -14.08487 -13.58217 -13.46202 -13.35352 -13.12475 -12.98638 -12.93379 -12.87135 -12.64718 -12.51509 -12.36218 -12.20036 -12.03337 -11.88480 -11.81520 -11.66710 -11.34567 -11.13088 -10.88580 -10.54386 -9.99613 -9.83212 -9.43972 -8.59710 -7.86795 -5.49591 0.17633 0.35682 1.41286 1.46294 1.55445 1.69143 2.21524 2.49009 2.73993 2.92924 3.17871 3.20893 3.62660 3.71009 3.74609 3.95226 4.05802 4.21315 4.23905 4.34219 4.36807 4.38787 4.40735 4.42887 4.51424 4.55899 4.58393 4.60956 4.67479 4.73374 4.74129 4.85276 4.93036 4.98225 5.08147 5.16053 5.23250 5.25797 5.28596 5.30785 5.42302 5.45708 5.53940 5.61391 5.65798 5.68142 5.74880 5.94250 6.44280 6.65852 7.14087 7.33191 7.81990 8.33916 9.08868 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.002468 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.427311 B =11344.520827 C =12506.665884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.598 5.598 5 C -0.269 4.269 6 H 0.049 0.951 7 C -0.028 4.028 8 N -0.909 5.909 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.287 1.287 13 C 0.145 3.855 14 C 0.121 3.879 15 N -0.714 5.714 16 C 0.507 3.493 17 O -0.588 6.588 18 C -0.093 4.093 19 C -0.070 4.070 20 C -0.115 4.115 21 C -0.099 4.099 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.091 4.091 25 C 0.091 3.909 26 O -0.379 6.379 27 C 0.091 3.909 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.050 0.950 35 H 0.254 0.746 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.025 0.975 40 H 0.414 0.586 41 H 0.129 0.871 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.146 0.854 45 H 0.136 0.864 46 H 0.113 0.887 47 H 0.083 0.917 48 H 0.085 0.915 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.516 -9.465 -18.044 20.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.319 5.319 5 C -0.399 4.399 6 H 0.067 0.933 7 C -0.226 4.226 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.213 1.213 13 C 0.018 3.982 14 C -0.006 4.006 15 N -0.366 5.366 16 C 0.294 3.706 17 O -0.468 6.468 18 C -0.132 4.132 19 C -0.070 4.070 20 C -0.133 4.133 21 C -0.117 4.117 22 C -0.150 4.150 23 C -0.150 4.150 24 C -0.109 4.109 25 C 0.015 3.985 26 O -0.298 6.298 27 C 0.015 3.985 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.250 0.750 41 H 0.147 0.853 42 H 0.152 0.848 43 H 0.155 0.845 44 H 0.164 0.836 45 H 0.154 0.846 46 H 0.131 0.869 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.391 -10.200 -17.911 20.659 hybrid contribution 0.826 0.282 1.227 1.506 sum 2.217 -9.918 -16.684 19.536 Atomic orbital electron populations 1.21653 0.94215 1.01755 1.02050 1.22014 0.96452 0.98843 1.00135 1.21043 0.83403 0.94431 0.99080 1.43860 1.00860 1.85083 1.02075 1.19150 1.06210 1.19819 0.94716 0.93321 1.25730 1.02066 0.94758 1.00006 1.70085 1.25921 1.15482 1.43763 0.85513 0.79473 0.77929 0.79343 1.20016 1.21413 1.21315 1.20931 0.99205 0.91957 0.86090 1.21859 0.94221 1.00710 0.83765 1.45985 1.57682 1.09729 1.23242 1.21229 0.79102 0.83617 0.86626 1.90695 1.56518 1.28362 1.71256 1.20728 1.03414 0.95705 0.93347 1.19482 0.94762 0.96135 0.96624 1.21274 0.97745 0.95061 0.99187 1.20567 0.99463 0.95090 0.96583 1.21318 0.96269 0.97584 0.99874 1.21282 0.97191 0.95820 1.00669 1.20423 0.99274 0.93994 0.97210 1.21844 0.91404 0.88337 0.96881 1.89038 1.39990 1.60479 1.40269 1.21862 0.94397 0.93062 0.89160 0.91989 0.92348 0.92572 0.93713 0.94478 0.94682 0.93157 0.93652 0.90763 0.93661 0.93745 0.95615 0.74997 0.85256 0.84754 0.84540 0.83646 0.84569 0.86884 0.89925 0.89718 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.13 -4.86 6.23 30.60 0.19 -4.67 16 3 C 0.15 5.95 5.72 86.38 0.49 6.44 16 4 N -0.60 -28.79 2.43 -702.01 -1.71 -30.49 16 5 C -0.27 -14.47 9.45 84.03 0.79 -13.67 16 6 H 0.05 2.69 7.92 -2.91 -0.02 2.67 16 7 C -0.03 -1.48 4.95 84.86 0.42 -1.06 16 8 N -0.91 -50.19 11.47 21.65 0.25 -49.94 16 9 Si 0.95 43.95 29.60 68.60 2.03 45.98 16 10 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 13 C 0.15 6.30 5.45 86.38 0.47 6.77 16 14 C 0.12 4.84 6.00 86.38 0.52 5.36 16 15 N -0.71 -21.92 5.56 -463.07 -2.57 -24.49 16 16 C 0.51 15.39 7.82 87.66 0.69 16.08 16 17 O -0.59 -23.75 16.03 -3.04 -0.05 -23.80 16 18 C -0.09 -1.81 5.83 29.10 0.17 -1.64 16 19 C -0.07 -1.59 4.38 -19.85 -0.09 -1.68 16 20 C -0.11 -2.57 9.70 22.29 0.22 -2.36 16 21 C -0.10 -2.06 10.03 22.19 0.22 -1.84 16 22 C -0.15 -3.23 6.33 -19.71 -0.12 -3.35 16 23 C -0.15 -3.32 6.33 -19.68 -0.12 -3.44 16 24 C -0.09 -2.04 9.70 22.22 0.22 -1.83 16 25 C 0.09 1.69 7.63 71.36 0.54 2.23 16 26 O -0.38 -7.90 11.72 -148.98 -1.75 -9.64 16 27 C 0.09 1.61 7.62 71.35 0.54 2.15 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.04 1.67 6.64 -2.39 -0.02 1.65 16 32 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 1.49 8.08 -2.39 -0.02 1.47 16 34 H 0.05 1.87 7.83 -2.38 -0.02 1.85 16 35 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 36 H 0.07 3.64 5.52 -2.39 -0.01 3.63 16 37 H 0.05 1.78 7.86 -2.39 -0.02 1.76 16 38 H 0.04 1.83 6.64 -2.39 -0.02 1.82 16 39 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.41 10.00 8.47 -92.70 -0.79 9.21 16 41 H 0.13 1.89 8.09 -2.39 -0.02 1.87 16 42 H 0.13 1.77 8.09 -2.38 -0.02 1.76 16 43 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 44 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 45 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 46 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -70.40 402.12 2.22 -68.18 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.16 Total: 23.84 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: 5.86 Total: 0.38 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -4.03 Total: -104.93 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.79 Total: -33.44 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -70.40 2.22 -68.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493330990.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.950 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds