Wall clock time and date at job start Tue Mar 31 2020 16:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47339 * 2 1 4 4 N 1.46495 * 109.47636 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00187 * 270.00449 * 4 3 2 6 6 O 1.21287 * 119.99928 * 179.97438 * 5 4 3 7 7 C 1.50702 * 120.00164 * 359.97438 * 5 4 3 8 8 O 1.42895 * 109.46973 * 180.02562 * 7 5 4 9 9 C 1.35905 * 116.99403 * 180.02562 * 8 7 5 10 10 C 1.38727 * 120.05904 * 359.72072 * 9 8 7 11 11 C 1.38148 * 119.94328 * 179.74496 * 10 9 8 12 12 C 1.38268 * 120.05724 * 0.51111 * 11 10 9 13 13 C 1.38263 * 120.10627 * 359.76652 * 12 11 10 14 14 C 1.38141 * 120.06259 * 359.97438 * 13 12 11 15 15 C 1.46502 * 120.00000 * 90.00051 * 4 3 2 16 16 H 1.09003 * 110.63793 * 358.31168 * 15 4 3 17 17 C 1.55160 * 110.72023 * 234.98006 * 15 4 3 18 18 C 1.54910 * 101.58122 * 206.13218 * 17 15 4 19 19 N 1.47425 * 104.83231 * 37.00939 * 18 17 15 20 20 C 1.36933 * 125.64542 * 156.13438 * 19 18 17 21 21 H 1.08005 * 119.99541 * 179.69129 * 20 19 18 22 22 C 1.38813 * 120.00564 * 359.69503 * 20 19 18 23 23 N 1.31616 * 119.99514 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00305 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47209 * 89.99775 * 24 22 20 26 26 H 1.48501 * 109.47422 * 209.99954 * 24 22 20 27 27 H 1.48504 * 109.47192 * 329.99911 * 24 22 20 28 28 C 1.47026 * 108.70074 * 335.87083 * 19 18 17 29 29 H 1.08999 * 109.47193 * 59.99606 * 1 2 3 30 30 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46811 * 299.99721 * 1 2 3 32 32 H 1.09004 * 109.46811 * 240.00279 * 2 1 3 33 33 H 1.08999 * 109.47193 * 120.00394 * 2 1 3 34 34 H 1.08999 * 109.47081 * 59.99901 * 3 2 1 35 35 H 1.08999 * 109.47300 * 300.00329 * 3 2 1 36 36 H 1.09007 * 109.46624 * 300.00133 * 7 5 4 37 37 H 1.09000 * 109.46857 * 59.99502 * 7 5 4 38 38 H 1.08003 * 120.02721 * 359.97438 * 10 9 8 39 39 H 1.08006 * 119.97132 * 180.28005 * 11 10 9 40 40 H 1.07996 * 119.94856 * 179.74313 * 12 11 10 41 41 H 1.08003 * 119.97174 * 179.97438 * 13 12 11 42 42 H 1.08004 * 120.03516 * 179.97438 * 14 13 12 43 43 H 1.08991 * 111.00600 * 324.20835 * 17 15 4 44 44 H 1.09002 * 111.00329 * 88.06048 * 17 15 4 45 45 H 1.09001 * 110.36852 * 278.17238 * 18 17 15 46 46 H 1.08998 * 110.36449 * 155.84885 * 18 17 15 47 47 H 0.97002 * 119.99999 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.87531 * 120.47707 * 28 19 18 49 49 H 1.08996 * 109.88343 * 241.48426 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.4426 1.1681 6 8 5.3913 1.4422 1.1685 7 6 3.4245 1.4433 2.4729 8 8 4.3527 1.4439 3.5593 9 6 3.8327 1.4439 4.8150 10 6 2.4575 1.4493 4.9976 11 6 1.9314 1.4440 6.2750 12 6 2.7743 1.4441 7.3710 13 6 4.1453 1.4446 7.1916 14 6 4.6763 1.4444 5.9164 15 6 4.2381 1.4424 -1.2678 16 1 3.5475 1.4121 -2.1106 17 6 5.2339 0.2539 -1.3262 18 6 6.3055 0.7939 -2.3059 19 7 6.4180 2.2292 -1.9884 20 6 7.5082 3.0189 -2.2390 21 1 7.4900 4.0651 -1.9717 22 6 8.6368 2.4747 -2.8367 23 7 8.6591 1.1996 -3.1620 24 14 10.1237 3.5522 -3.1792 25 1 11.0355 3.5247 -2.0073 26 1 10.8400 3.0416 -4.3757 27 1 9.6780 4.9469 -3.4269 28 6 5.1633 2.6736 -1.3639 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 2.7980 2.3335 2.5301 37 1 2.7974 0.5535 2.5306 38 1 1.7987 1.4538 4.1417 39 1 0.8608 1.4436 6.4176 40 1 2.3612 1.4442 8.3688 41 1 4.8016 1.4451 8.0493 42 1 5.7473 1.4452 5.7768 43 1 5.6654 0.0571 -0.3449 44 1 4.7534 -0.6390 -1.7262 45 1 5.9797 0.6580 -3.3371 46 1 7.2589 0.2926 -2.1392 47 1 9.4475 0.8194 -3.5800 48 1 5.3642 3.0652 -0.3666 49 1 4.6965 3.4441 -1.9774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493973139.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:53 Heat of formation + Delta-G solvation = -6.876418 kcal Electronic energy + Delta-G solvation = -29076.565771 eV Core-core repulsion = 25198.384338 eV Total energy + Delta-G solvation = -3878.181434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.63647 -39.74424 -37.59586 -36.52411 -36.01905 -33.06769 -31.89079 -31.29591 -30.37255 -29.27253 -28.38792 -27.09319 -25.87768 -24.33455 -22.93554 -22.45170 -21.93438 -20.88938 -20.06332 -18.78481 -18.39990 -17.07134 -16.87857 -16.39997 -16.31507 -15.81694 -15.52942 -14.84678 -14.58216 -14.54732 -14.50081 -14.09220 -13.82096 -13.61596 -13.54023 -13.06264 -12.88021 -12.73989 -12.45735 -12.38913 -12.03157 -11.82401 -11.68181 -11.58453 -11.46229 -11.30097 -11.09219 -10.94058 -10.89746 -10.76591 -10.69057 -10.43530 -10.02550 -9.74447 -9.47418 -9.23803 -9.10112 -8.53746 -8.40929 -8.35576 -6.68443 -5.52476 -2.92820 1.10602 1.23217 2.51335 2.75804 3.45961 3.48889 3.53602 3.55107 3.57351 4.33996 4.52452 4.61048 4.63961 4.66758 4.71855 4.81143 4.88596 4.91077 5.05400 5.14490 5.17118 5.26241 5.35603 5.39875 5.44071 5.45990 5.59692 5.64228 5.76223 5.77927 5.79832 5.82930 5.92886 6.03663 6.08660 6.16616 6.28661 6.30373 6.52244 6.57682 6.62604 6.68372 6.80958 7.17805 7.22396 7.51666 7.65569 7.75282 7.98312 8.39365 8.50069 9.34681 9.95869 10.60711 11.51622 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011837 B = 0.003138 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.979360 B = 8920.580263 C =10816.181168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.105 3.895 4 N -0.603 5.603 5 C 0.507 3.493 6 O -0.480 6.480 7 C 0.043 3.957 8 O -0.286 6.286 9 C 0.133 3.867 10 C -0.213 4.213 11 C -0.081 4.081 12 C -0.163 4.163 13 C -0.080 4.080 14 C -0.149 4.149 15 C 0.137 3.863 16 H 0.091 0.909 17 C -0.157 4.157 18 C 0.158 3.842 19 N -0.596 5.596 20 C -0.214 4.214 21 H 0.075 0.925 22 C -0.014 4.014 23 N -0.924 5.924 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.132 3.868 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.009 0.991 46 H 0.107 0.893 47 H 0.250 0.750 48 H 0.035 0.965 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.870 -2.555 15.740 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C -0.018 4.018 4 N -0.338 5.338 5 C 0.292 3.708 6 O -0.351 6.351 7 C -0.036 4.036 8 O -0.198 6.198 9 C 0.088 3.912 10 C -0.232 4.232 11 C -0.099 4.099 12 C -0.182 4.182 13 C -0.098 4.098 14 C -0.168 4.168 15 C 0.035 3.965 16 H 0.109 0.891 17 C -0.196 4.196 18 C 0.033 3.967 19 N -0.322 5.322 20 C -0.342 4.342 21 H 0.093 0.907 22 C -0.209 4.209 23 N -0.573 5.573 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.209 1.209 28 C 0.005 3.995 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.027 0.973 46 H 0.125 0.875 47 H 0.061 0.939 48 H 0.053 0.947 49 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -19.761 -2.542 15.572 25.287 hybrid contribution 0.234 0.541 -0.285 0.655 sum -19.527 -2.001 15.287 24.880 Atomic orbital electron populations 1.21710 0.95093 1.02024 1.01915 1.22022 0.96024 0.97239 1.03193 1.21718 0.79888 0.96914 1.03298 1.47895 1.05981 1.74193 1.05745 1.19851 0.88315 0.78487 0.84193 1.90878 1.12872 1.45029 1.86341 1.22631 0.92068 1.03113 0.85774 1.86215 1.34125 1.88087 1.11380 1.19141 0.92011 0.95477 0.84621 1.21265 0.93772 1.09408 0.98749 1.20929 0.99732 0.97398 0.91850 1.21057 0.93595 1.04681 0.98830 1.20988 0.95314 0.97382 0.96137 1.20539 1.00293 1.05692 0.90258 1.22235 0.93267 0.98314 0.82686 0.89137 1.23451 0.97730 0.95323 1.03085 1.21845 0.97883 0.84680 0.92303 1.44286 1.11127 1.06544 1.70199 1.19053 0.90977 0.91850 1.32344 0.90701 1.24757 0.98232 0.96378 1.01486 1.69795 1.28674 1.10907 1.47932 0.86072 0.82876 0.79183 0.77378 1.21649 1.21752 1.20850 1.21484 0.87777 0.93343 0.96863 0.92387 0.92429 0.92713 0.90931 0.91900 0.90893 0.89775 0.89456 0.89390 0.85555 0.85864 0.86010 0.85332 0.84854 0.89927 0.92906 0.97274 0.87522 0.93889 0.94700 0.96556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.15 -1.21 6.26 -26.73 -0.17 -1.37 16 3 C 0.11 0.98 5.19 -4.05 -0.02 0.96 16 4 N -0.60 -8.70 2.54 -164.03 -0.42 -9.12 16 5 C 0.51 8.39 6.85 -10.99 -0.08 8.31 16 6 O -0.48 -10.74 12.85 -14.36 -0.18 -10.93 16 7 C 0.04 0.53 3.77 36.01 0.14 0.66 16 8 O -0.29 -4.32 9.67 -39.35 -0.38 -4.70 16 9 C 0.13 1.67 6.69 -39.22 -0.26 1.41 16 10 C -0.21 -2.10 9.04 -39.43 -0.36 -2.46 16 11 C -0.08 -0.69 10.04 -39.60 -0.40 -1.08 16 12 C -0.16 -1.37 10.04 -39.56 -0.40 -1.77 16 13 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 14 C -0.15 -1.74 9.99 -39.43 -0.39 -2.13 16 15 C 0.14 2.47 3.44 -66.10 -0.23 2.25 16 16 H 0.09 1.43 7.88 -51.93 -0.41 1.02 16 17 C -0.16 -3.25 6.40 -24.58 -0.16 -3.40 16 18 C 0.16 4.09 5.89 -2.53 -0.01 4.07 16 19 N -0.60 -16.37 3.39 -170.07 -0.58 -16.95 16 20 C -0.21 -6.36 10.27 -15.06 -0.15 -6.52 16 21 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 22 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 23 N -0.92 -28.27 10.09 55.49 0.56 -27.71 16 24 Si 0.91 23.26 29.55 -169.99 -5.02 18.24 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 28 C 0.13 3.00 6.49 -3.07 -0.02 2.98 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.54 7.22 -51.93 -0.38 0.16 16 34 H 0.07 0.52 6.44 -51.93 -0.33 0.18 16 35 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 36 H 0.09 0.84 6.91 -51.93 -0.36 0.48 16 37 H 0.09 0.84 6.72 -51.93 -0.35 0.49 16 38 H 0.13 0.97 6.30 -52.48 -0.33 0.64 16 39 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 42 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 43 H 0.08 1.90 5.81 -51.93 -0.30 1.60 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.11 3.14 5.87 -51.93 -0.30 2.84 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.04 0.86 6.28 -51.93 -0.33 0.53 16 49 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 387.98 15.07 5.85 5.85 Total: -1.00 -36.14 387.98 -10.51 -46.65 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.70 Total: -1.05 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.63 Total: -0.28 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.43 Total: -53.78 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.57 Total: -15.63 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.24 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.14 -10.51 -46.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493973139.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.772 kcal (2) G-P(sol) polarization free energy of solvation -36.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds