Wall clock time and date at job start Tue Mar 31 2020 16:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47339 * 2 1 4 4 N 1.46495 * 109.47636 * 179.97438 * 3 2 1 5 5 C 1.34774 * 120.00187 * 270.00449 * 4 3 2 6 6 O 1.21287 * 119.99928 * 179.97438 * 5 4 3 7 7 C 1.50702 * 120.00164 * 359.97438 * 5 4 3 8 8 O 1.42895 * 109.46973 * 180.02562 * 7 5 4 9 9 C 1.35905 * 116.99403 * 180.02562 * 8 7 5 10 10 C 1.38727 * 120.05904 * 359.72072 * 9 8 7 11 11 C 1.38148 * 119.94328 * 179.74496 * 10 9 8 12 12 C 1.38268 * 120.05724 * 0.51111 * 11 10 9 13 13 C 1.38263 * 120.10627 * 359.76652 * 12 11 10 14 14 C 1.38141 * 120.06259 * 359.97438 * 13 12 11 15 15 C 1.46502 * 120.00000 * 90.00051 * 4 3 2 16 16 H 1.09003 * 110.63793 * 358.31168 * 15 4 3 17 17 C 1.55160 * 110.72023 * 234.98006 * 15 4 3 18 18 C 1.54910 * 101.58122 * 206.13218 * 17 15 4 19 19 N 1.47425 * 104.83231 * 37.00939 * 18 17 15 20 20 C 1.36933 * 125.64542 * 156.13438 * 19 18 17 21 21 H 1.08005 * 119.99541 * 179.69129 * 20 19 18 22 22 C 1.38813 * 120.00564 * 359.69503 * 20 19 18 23 23 N 1.31616 * 119.99514 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00305 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47209 * 89.99775 * 24 22 20 26 26 H 1.48501 * 109.47422 * 209.99954 * 24 22 20 27 27 H 1.48504 * 109.47192 * 329.99911 * 24 22 20 28 28 C 1.47026 * 108.70074 * 335.87083 * 19 18 17 29 29 H 1.08999 * 109.47193 * 59.99606 * 1 2 3 30 30 H 1.08997 * 109.47000 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46811 * 299.99721 * 1 2 3 32 32 H 1.09004 * 109.46811 * 240.00279 * 2 1 3 33 33 H 1.08999 * 109.47193 * 120.00394 * 2 1 3 34 34 H 1.08999 * 109.47081 * 59.99901 * 3 2 1 35 35 H 1.08999 * 109.47300 * 300.00329 * 3 2 1 36 36 H 1.09007 * 109.46624 * 300.00133 * 7 5 4 37 37 H 1.09000 * 109.46857 * 59.99502 * 7 5 4 38 38 H 1.08003 * 120.02721 * 359.97438 * 10 9 8 39 39 H 1.08006 * 119.97132 * 180.28005 * 11 10 9 40 40 H 1.07996 * 119.94856 * 179.74313 * 12 11 10 41 41 H 1.08003 * 119.97174 * 179.97438 * 13 12 11 42 42 H 1.08004 * 120.03516 * 179.97438 * 14 13 12 43 43 H 1.08991 * 111.00600 * 324.20835 * 17 15 4 44 44 H 1.09002 * 111.00329 * 88.06048 * 17 15 4 45 45 H 1.09001 * 110.36852 * 278.17238 * 18 17 15 46 46 H 1.08998 * 110.36449 * 155.84885 * 18 17 15 47 47 H 0.97002 * 119.99999 * 179.97438 * 23 22 20 48 48 H 1.09004 * 109.87531 * 120.47707 * 28 19 18 49 49 H 1.08996 * 109.88343 * 241.48426 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1784 1.4426 1.1681 6 8 5.3913 1.4422 1.1685 7 6 3.4245 1.4433 2.4729 8 8 4.3527 1.4439 3.5593 9 6 3.8327 1.4439 4.8150 10 6 2.4575 1.4493 4.9976 11 6 1.9314 1.4440 6.2750 12 6 2.7743 1.4441 7.3710 13 6 4.1453 1.4446 7.1916 14 6 4.6763 1.4444 5.9164 15 6 4.2381 1.4424 -1.2678 16 1 3.5475 1.4121 -2.1106 17 6 5.2339 0.2539 -1.3262 18 6 6.3055 0.7939 -2.3059 19 7 6.4180 2.2292 -1.9884 20 6 7.5082 3.0189 -2.2390 21 1 7.4900 4.0651 -1.9717 22 6 8.6368 2.4747 -2.8367 23 7 8.6591 1.1996 -3.1620 24 14 10.1237 3.5522 -3.1792 25 1 11.0355 3.5247 -2.0073 26 1 10.8400 3.0416 -4.3757 27 1 9.6780 4.9469 -3.4269 28 6 5.1633 2.6736 -1.3639 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8899 36 1 2.7980 2.3335 2.5301 37 1 2.7974 0.5535 2.5306 38 1 1.7987 1.4538 4.1417 39 1 0.8608 1.4436 6.4176 40 1 2.3612 1.4442 8.3688 41 1 4.8016 1.4451 8.0493 42 1 5.7473 1.4452 5.7768 43 1 5.6654 0.0571 -0.3449 44 1 4.7534 -0.6390 -1.7262 45 1 5.9797 0.6580 -3.3371 46 1 7.2589 0.2926 -2.1392 47 1 9.4475 0.8194 -3.5800 48 1 5.3642 3.0652 -0.3666 49 1 4.6965 3.4441 -1.9774 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493973139.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:52 Heat of formation + Delta-G solvation = -28.687495 kcal Electronic energy + Delta-G solvation = -29077.511571 eV Core-core repulsion = 25198.384338 eV Total energy + Delta-G solvation = -3879.127233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73845 -40.78629 -38.73534 -37.97134 -37.16550 -34.62291 -33.30516 -32.07025 -31.40249 -30.90382 -29.74448 -28.46027 -26.96018 -26.21152 -23.76377 -23.32715 -22.68147 -22.24430 -21.99923 -19.94464 -19.38325 -18.93144 -18.19600 -17.37583 -17.25985 -16.93393 -16.67488 -16.49478 -15.84595 -15.64530 -15.57475 -15.32946 -15.16626 -14.73513 -14.33759 -14.30437 -14.11203 -13.79504 -13.69636 -13.59971 -13.36147 -13.02355 -12.96915 -12.79776 -12.73107 -12.47060 -12.46464 -12.25390 -12.09265 -12.03499 -12.00923 -11.85127 -11.79772 -11.58582 -11.35388 -10.76243 -10.53234 -9.94251 -9.66402 -9.19516 -8.87856 -7.78230 -5.22063 0.40453 0.48899 1.41210 1.45206 1.47816 1.52892 1.53971 2.44274 2.52695 2.85766 3.29280 3.35142 3.72655 3.76729 3.86352 3.95928 3.98621 4.00009 4.05476 4.07889 4.22401 4.24112 4.30668 4.43390 4.47919 4.54636 4.59937 4.66687 4.70573 4.72525 4.77327 4.94534 4.96803 5.00477 5.06341 5.10079 5.27397 5.31862 5.35761 5.40649 5.48577 5.52059 5.61306 5.61453 5.72690 5.78561 5.85936 6.28958 6.32217 6.46999 7.09276 7.18245 7.77180 8.40983 9.23650 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011837 B = 0.003138 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2364.979360 B = 8920.580263 C =10816.181168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.098 3.902 4 N -0.594 5.594 5 C 0.499 3.501 6 O -0.553 6.553 7 C 0.051 3.949 8 O -0.328 6.328 9 C 0.103 3.897 10 C -0.212 4.212 11 C -0.080 4.080 12 C -0.162 4.162 13 C -0.084 4.084 14 C -0.179 4.179 15 C 0.156 3.844 16 H 0.125 0.875 17 C -0.141 4.141 18 C 0.161 3.839 19 N -0.619 5.619 20 C -0.238 4.238 21 H 0.074 0.926 22 C -0.070 4.070 23 N -0.949 5.949 24 Si 0.983 3.017 25 H -0.290 1.290 26 H -0.287 1.287 27 H -0.268 1.268 28 C 0.130 3.870 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.115 0.885 43 H 0.056 0.944 44 H 0.084 0.916 45 H -0.001 1.001 46 H 0.064 0.936 47 H 0.247 0.753 48 H 0.012 0.988 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.977 -2.058 17.079 30.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C -0.023 4.023 4 N -0.328 5.328 5 C 0.286 3.714 6 O -0.430 6.430 7 C -0.027 4.027 8 O -0.241 6.241 9 C 0.058 3.942 10 C -0.231 4.231 11 C -0.098 4.098 12 C -0.180 4.180 13 C -0.102 4.102 14 C -0.198 4.198 15 C 0.052 3.948 16 H 0.143 0.857 17 C -0.181 4.181 18 C 0.036 3.964 19 N -0.345 5.345 20 C -0.367 4.367 21 H 0.091 0.909 22 C -0.262 4.262 23 N -0.599 5.599 24 Si 0.810 3.190 25 H -0.217 1.217 26 H -0.213 1.213 27 H -0.193 1.193 28 C 0.003 3.997 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.123 0.877 35 H 0.119 0.881 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.134 0.866 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.016 0.984 46 H 0.082 0.918 47 H 0.057 0.943 48 H 0.030 0.970 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -23.960 -2.040 16.926 29.407 hybrid contribution 1.458 0.385 -0.606 1.625 sum -22.502 -1.654 16.320 27.847 Atomic orbital electron populations 1.21675 0.93072 1.02484 1.03000 1.21970 0.97610 0.96064 1.02445 1.22158 0.76092 0.98358 1.05741 1.47917 1.08096 1.72890 1.03853 1.20743 0.87798 0.76750 0.86074 1.90853 1.16192 1.48430 1.87504 1.22692 0.91163 1.05996 0.82807 1.86155 1.36146 1.88990 1.12835 1.19417 0.93561 0.97602 0.83594 1.21555 0.92580 1.08489 1.00466 1.21382 1.01484 0.95794 0.91110 1.21480 0.93036 1.02992 1.00448 1.21264 0.96541 0.96780 0.95595 1.20694 0.99831 1.07625 0.91680 1.21946 0.92987 0.94148 0.85714 0.85712 1.23188 0.97116 0.97543 1.00224 1.21592 0.97578 0.84233 0.93011 1.44589 1.12352 1.07157 1.70420 1.19408 0.92429 0.92310 1.32531 0.90857 1.25667 1.01065 0.97863 1.01621 1.70071 1.29100 1.12398 1.48359 0.85016 0.78920 0.78099 0.76917 1.21742 1.21310 1.19276 1.21631 0.87111 0.95781 0.95152 0.91916 0.92345 0.91043 0.92383 0.92150 0.87745 0.88138 0.86205 0.86205 0.83070 0.82540 0.83162 0.83450 0.86640 0.92563 0.89737 0.98359 0.91840 0.94343 0.97000 0.95468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.91 71.98 0.71 -0.45 16 2 C -0.14 -1.84 6.26 30.59 0.19 -1.65 16 3 C 0.10 1.43 5.19 86.38 0.45 1.88 16 4 N -0.59 -16.17 2.54 -791.27 -2.01 -18.18 16 5 C 0.50 16.48 6.85 87.66 0.60 17.08 16 6 O -0.55 -26.19 12.85 15.99 0.21 -25.98 16 7 C 0.05 1.17 3.77 71.24 0.27 1.44 16 8 O -0.33 -10.12 9.67 -73.45 -0.71 -10.83 16 9 C 0.10 2.56 6.69 22.51 0.15 2.71 16 10 C -0.21 -3.58 9.04 22.37 0.20 -3.37 16 11 C -0.08 -1.05 10.04 22.26 0.22 -0.82 16 12 C -0.16 -2.21 10.04 22.28 0.22 -1.99 16 13 C -0.08 -1.46 10.04 22.25 0.22 -1.24 16 14 C -0.18 -4.34 9.99 22.37 0.22 -4.12 16 15 C 0.16 5.49 3.44 46.18 0.16 5.65 16 16 H 0.13 3.58 7.88 -2.39 -0.02 3.56 16 17 C -0.14 -5.98 6.40 31.99 0.20 -5.78 16 18 C 0.16 8.73 5.89 86.86 0.51 9.24 16 19 N -0.62 -35.46 3.39 -691.99 -2.35 -37.81 16 20 C -0.24 -14.71 10.27 84.03 0.86 -13.85 16 21 H 0.07 4.41 7.83 -2.91 -0.02 4.38 16 22 C -0.07 -4.30 5.49 84.86 0.47 -3.84 16 23 N -0.95 -60.67 10.09 21.65 0.22 -60.45 16 24 Si 0.98 49.22 29.55 68.60 2.03 51.24 16 25 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 27 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 28 C 0.13 5.99 6.49 86.73 0.56 6.55 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.06 0.82 7.22 -2.39 -0.02 0.80 16 34 H 0.10 0.93 6.44 -2.39 -0.02 0.92 16 35 H 0.10 1.23 7.96 -2.39 -0.02 1.21 16 36 H 0.12 1.89 6.91 -2.38 -0.02 1.87 16 37 H 0.12 1.91 6.72 -2.39 -0.02 1.90 16 38 H 0.15 1.63 6.30 -2.91 -0.02 1.62 16 39 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 42 H 0.12 3.01 8.06 -2.91 -0.02 2.99 16 43 H 0.06 2.72 5.81 -2.39 -0.01 2.70 16 44 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 45 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 46 H 0.06 3.99 5.87 -2.39 -0.01 3.98 16 47 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 48 H 0.01 0.61 6.28 -2.38 -0.01 0.60 16 49 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -87.11 387.98 4.55 -82.56 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.93 Total: 12.01 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 6.24 Total: 7.45 kcal Atomic # 7 Polarization: -112.30 SS G_CDS: -4.14 Total: -116.44 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.50 Total: -36.82 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.03 Total: 51.24 kcal Total: -87.11 4.55 -82.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493973139.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.870 kcal (2) G-P(sol) polarization free energy of solvation -87.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds