Wall clock time and date at job start Tue Mar 31 2020 16:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47557 * 2 1 4 4 N 1.46495 * 109.47454 * 180.02562 * 3 2 1 5 5 C 1.34786 * 119.99861 * 277.79836 * 4 3 2 6 6 O 1.21583 * 120.00303 * 45.42273 * 5 4 3 7 7 C 1.47533 * 119.99761 * 225.42469 * 5 4 3 8 8 C 1.39708 * 120.19303 * 324.56076 * 7 5 4 9 9 C 1.37792 * 119.90888 * 179.74090 * 8 7 5 10 10 C 1.38544 * 120.29868 * 0.51581 * 9 8 7 11 11 C 1.38055 * 120.39201 * 359.76477 * 10 9 8 12 12 C 1.38711 * 120.08431 * 359.97438 * 11 10 9 13 13 O 1.35643 * 120.15062 * 179.97438 * 12 11 10 14 14 C 1.42900 * 117.00227 * 0.02562 * 13 12 11 15 15 C 1.46496 * 120.00366 * 97.79241 * 4 3 2 16 16 H 1.09000 * 110.78235 * 334.92848 * 15 4 3 17 17 C 1.55161 * 110.71856 * 98.16111 * 15 4 3 18 18 C 1.54912 * 101.58239 * 153.87056 * 17 15 4 19 19 N 1.47435 * 104.82809 * 322.98993 * 18 17 15 20 20 C 1.36930 * 125.64443 * 204.09242 * 19 18 17 21 21 H 1.07997 * 119.99894 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00407 * 0.04469 * 20 19 18 23 23 N 1.31622 * 120.00071 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00185 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.46979 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47265 * 120.00152 * 24 22 20 27 27 H 1.48498 * 109.46767 * 239.99680 * 24 22 20 28 28 C 1.47014 * 108.70415 * 24.13097 * 19 18 17 29 29 H 1.09001 * 109.47600 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47281 * 300.00374 * 1 2 3 31 31 H 1.09006 * 109.47327 * 59.99945 * 1 2 3 32 32 H 1.08996 * 109.46892 * 239.99568 * 2 1 3 33 33 H 1.09000 * 109.46912 * 119.99961 * 2 1 3 34 34 H 1.09005 * 109.47210 * 60.00056 * 3 2 1 35 35 H 1.08993 * 109.47114 * 300.00276 * 3 2 1 36 36 H 1.08005 * 120.04619 * 359.97438 * 8 7 5 37 37 H 1.07999 * 119.84939 * 180.25816 * 9 8 7 38 38 H 1.08007 * 119.80359 * 179.73625 * 10 9 8 39 39 H 1.07996 * 119.95878 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.47341 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47186 * 300.00288 * 14 13 12 42 42 H 1.08999 * 109.47378 * 60.00384 * 14 13 12 43 43 H 1.08998 * 111.00713 * 271.94462 * 17 15 4 44 44 H 1.08997 * 111.00597 * 35.79380 * 17 15 4 45 45 H 1.08998 * 110.36485 * 204.15675 * 18 17 15 46 46 H 1.09000 * 110.46052 * 81.87525 * 18 17 15 47 47 H 0.96996 * 120.00403 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.88401 * 239.52147 * 28 19 18 49 49 H 1.09000 * 109.88733 * 118.35458 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1794 1.2838 1.1556 6 8 3.8437 0.4191 1.9415 7 6 5.3249 2.1596 1.4674 8 6 6.1749 2.5945 0.4475 9 6 7.2400 3.4168 0.7446 10 6 7.4788 3.8062 2.0525 11 6 6.6502 3.3791 3.0708 12 6 5.5702 2.5554 2.7892 13 8 4.7555 2.1345 3.7887 14 6 5.0677 2.5785 5.1106 15 6 4.2370 1.6146 -1.2578 16 1 3.6307 1.2948 -2.1053 17 6 4.6899 3.0884 -1.4319 18 6 5.9312 2.9266 -2.3445 19 7 6.5817 1.6875 -1.8805 20 6 7.9052 1.3737 -2.0383 21 1 8.2865 0.4362 -1.6614 22 6 8.7569 2.2608 -2.6822 23 7 8.2922 3.4033 -3.1416 24 14 10.5623 1.8324 -2.8980 25 1 10.8301 0.5007 -2.2981 26 1 10.8937 1.7996 -4.3451 27 1 11.3982 2.8566 -2.2218 28 6 5.5738 0.8443 -1.2214 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9562 -0.8899 36 1 5.9953 2.2898 -0.5730 37 1 7.8940 3.7558 -0.0452 38 1 8.3184 4.4474 2.2769 39 1 6.8431 3.6866 4.0879 40 1 4.3402 2.1704 5.8123 41 1 6.0661 2.2359 5.3826 42 1 5.0352 3.6674 5.1454 43 1 3.9173 3.6790 -1.9243 44 1 4.9644 3.5286 -0.4734 45 1 6.6037 3.7760 -2.2242 46 1 5.6277 2.8284 -3.3868 47 1 8.8872 4.0230 -3.5919 48 1 5.8656 0.6570 -0.1880 49 1 5.4724 -0.0996 -1.7570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493974265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:16 Heat of formation + Delta-G solvation = 83.151615 kcal Electronic energy + Delta-G solvation = -31144.389394 eV Core-core repulsion = 27270.111869 eV Total energy + Delta-G solvation = -3874.277525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -41.37245 -39.19358 -38.17484 -36.45676 -35.36615 -33.39121 -31.85833 -30.68434 -29.54109 -29.24509 -27.73136 -27.06959 -25.80432 -24.74081 -22.97917 -22.16784 -21.41717 -20.78063 -20.31389 -18.57119 -17.93184 -17.36513 -16.29523 -16.20212 -15.59956 -15.53934 -15.25026 -15.01896 -14.83773 -14.34254 -14.10081 -13.67918 -13.43332 -13.20807 -13.05609 -12.88496 -12.66284 -12.33117 -12.06797 -11.97311 -11.80513 -11.69313 -11.51018 -11.31489 -11.17695 -11.08505 -10.97485 -10.83420 -10.72010 -10.58733 -10.41950 -10.24869 -10.14466 -9.86690 -9.38421 -9.29573 -8.83675 -8.26789 -7.95791 -7.65434 -7.04308 -5.87184 -3.33233 1.49473 2.05709 3.03915 3.29908 3.34638 3.38592 3.41253 3.56502 4.30975 4.39291 4.89520 5.08143 5.08650 5.11120 5.18740 5.22860 5.24086 5.32800 5.33226 5.40617 5.43543 5.49825 5.54865 5.59376 5.64850 5.75195 5.87511 5.96306 5.98399 6.05505 6.10072 6.12268 6.27104 6.34956 6.37482 6.47911 6.51364 6.57138 6.62120 6.79487 7.11660 7.16681 7.26592 7.29966 7.42716 7.55865 7.64019 7.75946 7.85069 8.07364 8.51020 8.96557 9.54585 10.11073 11.14979 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.005370 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.639477 B = 5213.342629 C = 7057.330328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.135 3.865 4 N -0.647 5.647 5 C 0.599 3.401 6 O -0.506 6.506 7 C -0.207 4.207 8 C -0.097 4.097 9 C -0.155 4.155 10 C -0.065 4.065 11 C -0.245 4.245 12 C 0.164 3.836 13 O -0.302 6.302 14 C 0.028 3.972 15 C 0.137 3.863 16 H 0.096 0.904 17 C -0.191 4.191 18 C 0.136 3.864 19 N -0.577 5.577 20 C -0.237 4.237 21 H 0.083 0.917 22 C 0.004 3.996 23 N -0.915 5.915 24 Si 0.914 3.086 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.288 1.288 28 C 0.097 3.903 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.248 0.752 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.120 0.880 46 H 0.025 0.975 47 H 0.256 0.744 48 H 0.049 0.951 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.718 1.519 7.946 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.186 4.186 3 C 0.013 3.987 4 N -0.383 5.383 5 C 0.390 3.610 6 O -0.380 6.380 7 C -0.212 4.212 8 C -0.114 4.114 9 C -0.173 4.173 10 C -0.083 4.083 11 C -0.264 4.264 12 C 0.117 3.883 13 O -0.215 6.215 14 C -0.068 4.068 15 C 0.032 3.968 16 H 0.114 0.886 17 C -0.231 4.231 18 C 0.013 3.987 19 N -0.304 5.304 20 C -0.364 4.364 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.561 5.561 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.214 1.214 28 C -0.028 4.028 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.261 0.739 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.138 0.862 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.114 0.886 45 H 0.138 0.862 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.873 0.977 8.274 12.919 hybrid contribution 1.234 0.048 0.168 1.246 sum -8.639 1.025 8.442 12.122 Atomic orbital electron populations 1.21705 0.95926 1.01504 1.01430 1.22061 0.95230 0.97946 1.03383 1.21336 0.78971 0.96460 1.01968 1.47337 1.05534 1.79167 1.06260 1.18007 0.81503 0.81266 0.80176 1.90678 1.66926 1.29877 1.50471 1.19752 1.02057 1.08016 0.91332 1.26212 0.89595 0.89063 1.06569 1.21268 0.99580 1.00489 0.95949 1.21208 0.97073 0.96775 0.93256 1.20923 0.99125 1.06374 0.99953 1.19065 0.89330 0.92754 0.87121 1.86173 1.50877 1.69274 1.15132 1.22994 1.01804 0.99525 0.82448 1.22178 0.92938 0.96257 0.85377 0.88613 1.24300 1.00119 0.95860 1.02778 1.22279 0.90829 0.92079 0.93556 1.44909 1.05036 1.16650 1.63789 1.19112 0.81752 1.02998 1.32555 0.89936 1.24782 0.98524 0.96465 0.99478 1.69767 1.33935 1.09545 1.42890 0.86010 0.84185 0.77850 0.77558 1.20307 1.21536 1.21425 1.22086 0.88230 0.94247 0.98240 0.92842 0.92898 0.92920 0.91968 0.90489 0.91745 0.90583 0.73947 0.84640 0.86617 0.86177 0.88746 0.92930 0.93087 0.91593 0.88633 0.86209 0.95661 0.93306 0.93352 0.94504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.15 -1.93 6.10 -26.74 -0.16 -2.09 16 3 C 0.14 1.85 5.56 -4.05 -0.02 1.83 16 4 N -0.65 -10.91 2.54 -165.25 -0.42 -11.33 16 5 C 0.60 11.85 5.27 -12.47 -0.07 11.78 16 6 O -0.51 -11.00 15.22 -12.47 -0.19 -11.19 16 7 C -0.21 -4.15 5.22 -104.85 -0.55 -4.70 16 8 C -0.10 -1.97 3.85 -39.20 -0.15 -2.12 16 9 C -0.15 -3.07 10.02 -39.63 -0.40 -3.47 16 10 C -0.06 -1.11 10.03 -39.54 -0.40 -1.51 16 11 C -0.24 -4.06 9.03 -39.47 -0.36 -4.42 16 12 C 0.16 3.07 6.67 -38.69 -0.26 2.81 16 13 O -0.30 -5.34 9.13 -36.39 -0.33 -5.67 16 14 C 0.03 0.33 9.81 101.05 0.99 1.33 16 15 C 0.14 2.34 3.32 -66.09 -0.22 2.12 16 16 H 0.10 1.46 8.08 -51.93 -0.42 1.04 16 17 C -0.19 -3.36 5.98 -24.58 -0.15 -3.51 16 18 C 0.14 2.90 5.27 -2.52 -0.01 2.89 16 19 N -0.58 -13.12 2.01 -201.91 -0.40 -13.52 16 20 C -0.24 -5.95 10.23 -15.06 -0.15 -6.11 16 21 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 22 C 0.00 0.10 5.49 -17.43 -0.10 0.01 16 23 N -0.91 -23.57 10.09 55.49 0.56 -23.01 16 24 Si 0.91 20.54 29.55 -169.99 -5.02 15.52 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 28 C 0.10 1.96 5.75 -3.07 -0.02 1.95 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.08 1.21 6.96 -51.93 -0.36 0.84 16 34 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 35 H 0.08 0.87 8.01 -51.93 -0.42 0.46 16 36 H 0.25 5.03 0.00 0.00 0.00 5.03 16 37 H 0.14 2.92 8.06 -52.49 -0.42 2.50 16 38 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 39 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 42 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.10 1.80 4.47 -53.53 -0.24 1.56 16 45 H 0.12 2.84 5.87 -51.93 -0.31 2.53 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 48 H 0.05 1.07 4.52 -51.93 -0.23 0.84 16 49 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 372.39 15.07 5.61 5.61 Total: -1.00 -28.81 372.39 -9.14 -37.95 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.30 Total: 10.02 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.64 Total: -4.36 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.27 Total: -47.87 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.52 Total: -16.86 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.81 -9.14 -37.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493974265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.098 kcal (2) G-P(sol) polarization free energy of solvation -28.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds