Wall clock time and date at job start Tue Mar 31 2020 16:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47557 * 2 1 4 4 N 1.46495 * 109.47454 * 180.02562 * 3 2 1 5 5 C 1.34786 * 119.99861 * 277.79836 * 4 3 2 6 6 O 1.21583 * 120.00303 * 45.42273 * 5 4 3 7 7 C 1.47533 * 119.99761 * 225.42469 * 5 4 3 8 8 C 1.39708 * 120.19303 * 324.56076 * 7 5 4 9 9 C 1.37792 * 119.90888 * 179.74090 * 8 7 5 10 10 C 1.38544 * 120.29868 * 0.51581 * 9 8 7 11 11 C 1.38055 * 120.39201 * 359.76477 * 10 9 8 12 12 C 1.38711 * 120.08431 * 359.97438 * 11 10 9 13 13 O 1.35643 * 120.15062 * 179.97438 * 12 11 10 14 14 C 1.42900 * 117.00227 * 0.02562 * 13 12 11 15 15 C 1.46496 * 120.00366 * 97.79241 * 4 3 2 16 16 H 1.09000 * 110.78235 * 334.92848 * 15 4 3 17 17 C 1.55161 * 110.71856 * 98.16111 * 15 4 3 18 18 C 1.54912 * 101.58239 * 153.87056 * 17 15 4 19 19 N 1.47435 * 104.82809 * 322.98993 * 18 17 15 20 20 C 1.36930 * 125.64443 * 204.09242 * 19 18 17 21 21 H 1.07997 * 119.99894 * 180.02562 * 20 19 18 22 22 C 1.38810 * 120.00407 * 0.04469 * 20 19 18 23 23 N 1.31622 * 120.00071 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00185 * 180.02562 * 22 20 19 25 25 H 1.48491 * 109.46979 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47265 * 120.00152 * 24 22 20 27 27 H 1.48498 * 109.46767 * 239.99680 * 24 22 20 28 28 C 1.47014 * 108.70415 * 24.13097 * 19 18 17 29 29 H 1.09001 * 109.47600 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47281 * 300.00374 * 1 2 3 31 31 H 1.09006 * 109.47327 * 59.99945 * 1 2 3 32 32 H 1.08996 * 109.46892 * 239.99568 * 2 1 3 33 33 H 1.09000 * 109.46912 * 119.99961 * 2 1 3 34 34 H 1.09005 * 109.47210 * 60.00056 * 3 2 1 35 35 H 1.08993 * 109.47114 * 300.00276 * 3 2 1 36 36 H 1.08005 * 120.04619 * 359.97438 * 8 7 5 37 37 H 1.07999 * 119.84939 * 180.25816 * 9 8 7 38 38 H 1.08007 * 119.80359 * 179.73625 * 10 9 8 39 39 H 1.07996 * 119.95878 * 179.97438 * 11 10 9 40 40 H 1.09004 * 109.47341 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47186 * 300.00288 * 14 13 12 42 42 H 1.08999 * 109.47378 * 60.00384 * 14 13 12 43 43 H 1.08998 * 111.00713 * 271.94462 * 17 15 4 44 44 H 1.08997 * 111.00597 * 35.79380 * 17 15 4 45 45 H 1.08998 * 110.36485 * 204.15675 * 18 17 15 46 46 H 1.09000 * 110.46052 * 81.87525 * 18 17 15 47 47 H 0.96996 * 120.00403 * 180.02562 * 23 22 20 48 48 H 1.09002 * 109.88401 * 239.52147 * 28 19 18 49 49 H 1.09000 * 109.88733 * 118.35458 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1794 1.2838 1.1556 6 8 3.8437 0.4191 1.9415 7 6 5.3249 2.1596 1.4674 8 6 6.1749 2.5945 0.4475 9 6 7.2400 3.4168 0.7446 10 6 7.4788 3.8062 2.0525 11 6 6.6502 3.3791 3.0708 12 6 5.5702 2.5554 2.7892 13 8 4.7555 2.1345 3.7887 14 6 5.0677 2.5785 5.1106 15 6 4.2370 1.6146 -1.2578 16 1 3.6307 1.2948 -2.1053 17 6 4.6899 3.0884 -1.4319 18 6 5.9312 2.9266 -2.3445 19 7 6.5817 1.6875 -1.8805 20 6 7.9052 1.3737 -2.0383 21 1 8.2865 0.4362 -1.6614 22 6 8.7569 2.2608 -2.6822 23 7 8.2922 3.4033 -3.1416 24 14 10.5623 1.8324 -2.8980 25 1 10.8301 0.5007 -2.2981 26 1 10.8937 1.7996 -4.3451 27 1 11.3982 2.8566 -2.2218 28 6 5.5738 0.8443 -1.2214 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6767 1.9562 -0.8899 36 1 5.9953 2.2898 -0.5730 37 1 7.8940 3.7558 -0.0452 38 1 8.3184 4.4474 2.2769 39 1 6.8431 3.6866 4.0879 40 1 4.3402 2.1704 5.8123 41 1 6.0661 2.2359 5.3826 42 1 5.0352 3.6674 5.1454 43 1 3.9173 3.6790 -1.9243 44 1 4.9644 3.5286 -0.4734 45 1 6.6037 3.7760 -2.2242 46 1 5.6277 2.8284 -3.3868 47 1 8.8872 4.0230 -3.5919 48 1 5.8656 0.6570 -0.1880 49 1 5.4724 -0.0996 -1.7570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493974265.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:13 Heat of formation + Delta-G solvation = 69.275638 kcal Electronic energy + Delta-G solvation = -31144.991102 eV Core-core repulsion = 27270.111869 eV Total energy + Delta-G solvation = -3874.879233 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -42.85993 -40.53241 -39.69333 -37.82638 -36.72797 -34.89075 -33.40317 -32.05371 -31.15411 -30.69223 -29.20708 -28.18682 -27.01960 -26.51272 -24.34137 -23.57093 -22.62450 -22.20186 -21.93834 -19.99173 -19.34332 -19.09909 -17.66182 -17.60785 -17.01495 -16.83758 -16.80081 -16.51432 -16.28202 -15.60478 -15.43795 -15.27596 -14.83017 -14.59402 -14.37726 -14.16451 -13.97877 -13.76628 -13.60261 -13.26355 -13.09103 -12.96391 -12.83190 -12.78218 -12.76780 -12.53382 -12.29611 -12.12803 -12.06462 -11.98961 -11.94985 -11.80611 -11.71645 -11.53626 -10.95830 -10.76560 -10.66397 -9.72119 -9.33181 -9.06389 -8.86573 -7.79686 -5.26721 0.05035 0.63075 1.48570 1.51661 1.57192 1.59515 2.01352 2.38122 2.47910 2.93513 3.30540 3.47474 3.57887 3.72027 3.88897 3.97262 4.09218 4.13678 4.17560 4.21023 4.35880 4.36903 4.45937 4.49422 4.54393 4.57519 4.64382 4.65869 4.68368 4.72266 4.86116 4.87522 4.94830 4.99573 5.13392 5.21378 5.23588 5.31628 5.36305 5.46488 5.49332 5.54979 5.65914 5.76757 5.85341 5.89537 6.10569 6.24211 6.36942 6.50817 7.05364 7.05821 7.65531 8.23801 9.19794 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.005370 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.639477 B = 5213.342629 C = 7057.330328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.142 4.142 3 C 0.129 3.871 4 N -0.641 5.641 5 C 0.598 3.402 6 O -0.535 6.535 7 C -0.233 4.233 8 C -0.107 4.107 9 C -0.178 4.178 10 C -0.058 4.058 11 C -0.237 4.237 12 C 0.158 3.842 13 O -0.325 6.325 14 C 0.016 3.984 15 C 0.150 3.850 16 H 0.125 0.875 17 C -0.175 4.175 18 C 0.143 3.857 19 N -0.589 5.589 20 C -0.247 4.247 21 H 0.072 0.928 22 C -0.033 4.033 23 N -0.930 5.930 24 Si 0.966 3.034 25 H -0.276 1.276 26 H -0.290 1.290 27 H -0.288 1.288 28 C 0.097 3.903 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.244 0.756 37 H 0.109 0.891 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.013 0.987 47 H 0.253 0.747 48 H 0.029 0.971 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.995 2.184 8.906 14.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.181 4.181 3 C 0.008 3.992 4 N -0.377 5.377 5 C 0.389 3.611 6 O -0.412 6.412 7 C -0.237 4.237 8 C -0.124 4.124 9 C -0.197 4.197 10 C -0.076 4.076 11 C -0.255 4.255 12 C 0.111 3.889 13 O -0.238 6.238 14 C -0.078 4.078 15 C 0.045 3.955 16 H 0.143 0.857 17 C -0.214 4.214 18 C 0.020 3.980 19 N -0.315 5.315 20 C -0.375 4.375 21 H 0.090 0.910 22 C -0.228 4.228 23 N -0.577 5.577 24 Si 0.795 3.205 25 H -0.201 1.201 26 H -0.217 1.217 27 H -0.215 1.215 28 C -0.028 4.028 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.256 0.744 37 H 0.127 0.873 38 H 0.163 0.837 39 H 0.175 0.825 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.116 0.884 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.031 0.969 47 H 0.063 0.937 48 H 0.047 0.953 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.181 1.646 9.239 14.597 hybrid contribution 1.630 -0.163 -0.007 1.638 sum -9.551 1.482 9.232 13.366 Atomic orbital electron populations 1.21657 0.93476 1.02270 1.02495 1.21970 0.97300 0.97098 1.01728 1.21634 0.76833 0.97231 1.03509 1.47363 1.06805 1.78278 1.05218 1.18127 0.81444 0.80870 0.80620 1.90655 1.67872 1.30996 1.51650 1.19907 1.02601 1.08878 0.92316 1.26008 0.90157 0.89664 1.06579 1.21135 0.99827 1.01963 0.96760 1.21476 0.97705 0.96263 0.92131 1.21264 0.97758 1.05015 1.01466 1.19279 0.89829 0.92641 0.87158 1.86148 1.51094 1.69679 1.16884 1.23373 1.03245 1.01026 0.80154 1.22122 0.91806 0.95221 0.86321 0.85676 1.24115 0.99106 0.96595 1.01620 1.22054 0.91712 0.90621 0.93645 1.44951 1.04843 1.17653 1.64053 1.19207 0.83322 1.02644 1.32355 0.90980 1.25327 1.01245 0.96528 0.99687 1.69942 1.34521 1.09943 1.43293 0.85218 0.80792 0.77477 0.77061 1.20145 1.21704 1.21483 1.22117 0.89493 0.94480 0.96700 0.92302 0.92628 0.91016 0.92082 0.93695 0.91793 0.87356 0.74366 0.87250 0.83717 0.82523 0.86607 0.91813 0.91131 0.88373 0.89688 0.88834 0.96854 0.93731 0.95347 0.94640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.91 71.98 0.71 -1.83 16 2 C -0.14 -3.52 6.10 30.59 0.19 -3.33 16 3 C 0.13 3.27 5.56 86.38 0.48 3.75 16 4 N -0.64 -21.04 2.54 -794.99 -2.02 -23.06 16 5 C 0.60 23.73 5.27 86.69 0.46 24.19 16 6 O -0.54 -23.67 15.22 13.00 0.20 -23.48 16 7 C -0.23 -9.38 5.22 -20.01 -0.10 -9.48 16 8 C -0.11 -4.42 3.85 22.52 0.09 -4.33 16 9 C -0.18 -7.24 10.02 22.24 0.22 -7.02 16 10 C -0.06 -1.91 10.03 22.30 0.22 -1.69 16 11 C -0.24 -7.36 9.03 22.34 0.20 -7.15 16 12 C 0.16 5.78 6.67 22.84 0.15 5.93 16 13 O -0.33 -11.09 9.13 -72.59 -0.66 -11.75 16 14 C 0.02 0.35 9.81 113.37 1.11 1.46 16 15 C 0.15 4.94 3.32 46.18 0.15 5.10 16 16 H 0.13 3.46 8.08 -2.39 -0.02 3.44 16 17 C -0.18 -6.01 5.98 31.99 0.19 -5.82 16 18 C 0.14 6.19 5.27 86.85 0.46 6.65 16 19 N -0.59 -27.42 2.01 -792.73 -1.59 -29.01 16 20 C -0.25 -12.80 10.23 84.03 0.86 -11.94 16 21 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 22 C -0.03 -1.71 5.49 84.86 0.47 -1.24 16 23 N -0.93 -49.12 10.09 21.65 0.22 -48.91 16 24 Si 0.97 42.91 29.55 68.60 2.03 44.94 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 27 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 28 C 0.10 3.99 5.75 86.73 0.50 4.49 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.04 1.40 6.96 -2.39 -0.02 1.39 16 34 H 0.06 1.65 8.10 -2.38 -0.02 1.63 16 35 H 0.11 2.07 8.01 -2.39 -0.02 2.05 16 36 H 0.24 10.08 0.00 0.00 0.00 10.08 16 37 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 38 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 39 H 0.16 3.63 6.30 -2.91 -0.02 3.61 16 40 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.06 1.23 7.66 -2.39 -0.02 1.21 16 42 H 0.07 1.24 7.66 -2.39 -0.02 1.22 16 43 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.09 3.19 4.47 -3.89 -0.02 3.17 16 45 H 0.09 4.58 5.87 -2.39 -0.01 4.57 16 46 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.25 13.04 8.31 -92.71 -0.77 12.27 16 48 H 0.03 1.31 4.52 -2.39 -0.01 1.30 16 49 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -65.04 372.39 5.48 -59.56 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.95 Total: 33.98 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 6.36 Total: -2.28 kcal Atomic # 7 Polarization: -97.58 SS G_CDS: -3.39 Total: -100.97 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -0.46 Total: -35.23 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -65.04 5.48 -59.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493974265.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.839 kcal (2) G-P(sol) polarization free energy of solvation -65.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds