Wall clock time and date at job start Tue Mar 31 2020 16:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47521 * 2 1 4 4 N 1.46500 * 109.46974 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99818 * 100.56599 * 4 3 2 6 6 O 1.21597 * 119.99931 * 187.50742 * 5 4 3 7 7 C 1.47531 * 120.00198 * 7.50390 * 5 4 3 8 8 C 1.39711 * 120.19182 * 328.59906 * 7 5 4 9 9 C 1.37781 * 119.90817 * 179.76649 * 8 7 5 10 10 C 1.38553 * 120.30220 * 0.53136 * 9 8 7 11 11 C 1.38058 * 120.38792 * 359.69592 * 10 9 8 12 12 C 1.38705 * 120.08363 * 0.04730 * 11 10 9 13 13 O 1.35654 * 120.14970 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99970 * 359.97438 * 13 12 11 15 15 C 1.46501 * 120.00356 * 280.55865 * 4 3 2 16 16 H 1.09007 * 110.88307 * 10.06637 * 15 4 3 17 17 C 1.55156 * 111.00619 * 246.18771 * 15 4 3 18 18 C 1.54324 * 102.93937 * 277.42740 * 17 15 4 19 19 N 1.47013 * 107.27159 * 337.80434 * 18 17 15 20 20 C 1.36944 * 125.65041 * 178.98105 * 19 18 17 21 21 H 1.07993 * 120.00126 * 179.97438 * 20 19 18 22 22 C 1.38808 * 119.99656 * 359.97438 * 20 19 18 23 23 N 1.31615 * 120.00298 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99934 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47006 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47100 * 119.99995 * 24 22 20 27 27 H 1.48505 * 109.47183 * 240.00120 * 24 22 20 28 28 C 1.47528 * 108.71790 * 358.94606 * 19 18 17 29 29 H 1.09005 * 109.46898 * 300.00037 * 1 2 3 30 30 H 1.09004 * 109.47138 * 59.99795 * 1 2 3 31 31 H 1.08997 * 109.47333 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47138 * 120.00205 * 2 1 3 33 33 H 1.09006 * 109.47190 * 239.99501 * 2 1 3 34 34 H 1.08995 * 109.47011 * 300.00035 * 3 2 1 35 35 H 1.09000 * 109.46671 * 59.99841 * 3 2 1 36 36 H 1.08000 * 120.04539 * 359.97438 * 8 7 5 37 37 H 1.08005 * 119.85275 * 180.22758 * 9 8 7 38 38 H 1.08003 * 119.80995 * 179.71876 * 10 9 8 39 39 H 1.07999 * 119.96083 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.47392 * 299.99992 * 14 13 12 41 41 H 1.09006 * 109.46830 * 60.00273 * 14 13 12 42 42 H 1.09001 * 109.47368 * 179.97438 * 14 13 12 43 43 H 1.08998 * 110.72030 * 35.79016 * 17 15 4 44 44 H 1.09000 * 110.71897 * 159.06449 * 17 15 4 45 45 H 1.08997 * 109.88175 * 97.22664 * 18 17 15 46 46 H 1.09004 * 109.88032 * 218.23775 * 18 17 15 47 47 H 0.96999 * 120.00607 * 179.97438 * 23 22 20 48 48 H 1.09002 * 110.37055 * 265.30484 * 28 19 18 49 49 H 1.09003 * 110.41270 * 142.94882 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1794 1.6561 -1.1466 6 8 5.3875 1.5216 -1.1757 7 6 3.4517 2.0533 -2.3669 8 6 2.1450 1.6082 -2.5821 9 6 1.4692 1.9866 -3.7216 10 6 2.0834 2.7984 -4.6615 11 6 3.3759 3.2415 -4.4638 12 6 4.0693 2.8747 -3.3199 13 8 5.3395 3.3089 -3.1244 14 6 5.9035 4.1423 -4.1390 15 6 4.2371 1.2100 1.2482 16 1 3.5626 0.8816 2.0391 17 6 5.0215 2.4780 1.6771 18 6 6.3119 2.3873 0.8354 19 7 6.4859 0.9783 0.4538 20 6 7.5031 0.4795 -0.3156 21 1 7.5424 -0.5760 -0.5406 22 6 8.4836 1.3308 -0.8062 23 7 8.4360 2.6171 -0.5316 24 14 9.8708 0.6507 -1.8563 25 1 9.6962 -0.8152 -2.0180 26 1 9.8464 1.3017 -3.1908 27 1 11.1721 0.9248 -1.1954 28 6 5.3838 0.1901 1.0374 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6641 0.9711 -1.8546 37 1 0.4578 1.6450 -3.8852 38 1 1.5478 3.0865 -5.5541 39 1 3.8478 3.8743 -5.2008 40 1 5.9213 3.6014 -5.0852 41 1 5.2993 5.0431 -4.2466 42 1 6.9201 4.4184 -3.8588 43 1 4.4620 3.3799 1.4292 44 1 5.2526 2.4467 2.7419 45 1 6.2158 3.0043 -0.0579 46 1 7.1644 2.7215 1.4268 47 1 9.1214 3.2119 -0.8742 48 1 5.6888 -0.2403 1.9912 49 1 5.0715 -0.5949 0.3486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493974273.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:21 Heat of formation + Delta-G solvation = 64.861452 kcal Electronic energy + Delta-G solvation = -31525.436101 eV Core-core repulsion = 27650.365455 eV Total energy + Delta-G solvation = -3875.070646 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.49330 -39.06287 -37.28169 -35.74320 -35.72343 -32.78214 -31.59794 -30.71313 -29.87774 -28.79209 -27.29209 -26.85868 -25.82931 -24.26124 -23.25288 -22.10652 -21.51084 -20.75690 -19.68000 -18.53522 -17.45971 -16.95068 -16.28624 -16.07403 -15.52414 -15.37607 -15.21307 -14.70864 -14.33712 -14.24744 -13.94004 -13.54127 -13.39991 -13.27089 -13.06083 -12.66253 -12.60359 -12.15159 -11.86023 -11.72847 -11.67275 -11.53396 -11.38705 -11.30449 -11.12495 -10.93939 -10.74276 -10.66859 -10.60468 -10.49100 -10.47423 -9.83591 -9.74747 -9.56203 -9.28385 -8.77211 -8.46216 -8.14056 -7.89481 -7.61986 -6.07828 -5.26772 -2.49490 1.23375 1.58768 3.54976 3.60494 3.61978 3.65553 3.67090 3.67793 4.24392 4.84165 4.84758 4.89207 4.99741 5.01482 5.07744 5.24443 5.31463 5.40214 5.43690 5.45610 5.53844 5.61610 5.64683 5.65758 5.74571 5.83876 5.85670 5.89704 5.94911 6.03095 6.03819 6.07462 6.19360 6.30136 6.39021 6.41155 6.44926 6.56360 6.67733 6.75327 6.79461 6.88649 6.92286 7.48654 7.76187 7.91259 8.03649 8.23479 8.30001 8.70068 9.41125 9.65281 10.28063 10.94857 11.86580 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.006220 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.482461 B = 4500.298091 C = 6277.029541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.081 3.919 4 N -0.609 5.609 5 C 0.500 3.500 6 O -0.378 6.378 7 C -0.151 4.151 8 C -0.088 4.088 9 C -0.177 4.177 10 C -0.070 4.070 11 C -0.225 4.225 12 C 0.178 3.822 13 O -0.266 6.266 14 C 0.029 3.971 15 C 0.136 3.864 16 H 0.078 0.922 17 C -0.161 4.161 18 C 0.190 3.810 19 N -0.563 5.563 20 C -0.181 4.181 21 H 0.064 0.936 22 C -0.006 4.006 23 N -0.917 5.917 24 Si 0.895 3.105 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.298 1.298 28 C 0.132 3.868 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.158 0.842 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.028 0.972 47 H 0.240 0.760 48 H 0.020 0.980 49 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.577 1.359 -3.534 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C -0.042 4.042 4 N -0.347 5.347 5 C 0.284 3.716 6 O -0.241 6.241 7 C -0.155 4.155 8 C -0.106 4.106 9 C -0.196 4.196 10 C -0.088 4.088 11 C -0.244 4.244 12 C 0.130 3.870 13 O -0.176 6.176 14 C -0.066 4.066 15 C 0.031 3.969 16 H 0.096 0.904 17 C -0.201 4.201 18 C 0.066 3.934 19 N -0.288 5.288 20 C -0.310 4.310 21 H 0.082 0.918 22 C -0.200 4.200 23 N -0.567 5.567 24 Si 0.728 3.272 25 H -0.212 1.212 26 H -0.225 1.225 27 H -0.226 1.226 28 C 0.004 3.996 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.175 0.825 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.121 0.879 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.046 0.954 47 H 0.051 0.949 48 H 0.037 0.963 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.455 1.331 -3.523 17.857 hybrid contribution 0.454 -0.116 -1.045 1.145 sum -17.001 1.215 -4.568 17.646 Atomic orbital electron populations 1.21744 0.95489 1.01791 1.01857 1.22061 0.95608 0.98098 1.03072 1.22335 0.81811 0.96253 1.03809 1.47672 1.04643 1.74518 1.07885 1.18364 0.88953 0.81573 0.82702 1.91685 1.09750 1.41286 1.81424 1.19789 0.95022 1.03054 0.97681 1.22107 0.92728 0.98553 0.97211 1.20917 1.00662 1.02527 0.95447 1.20967 0.93913 0.95624 0.98303 1.21196 0.97036 1.07303 0.98815 1.19156 0.84478 0.91324 0.92063 1.86517 1.23964 1.62717 1.44444 1.23069 0.99778 0.92795 0.90989 1.22227 0.93011 0.96994 0.84621 0.90371 1.23387 1.00082 0.96609 0.99979 1.21077 0.89854 0.87019 0.95455 1.44104 1.24775 1.02442 1.57489 1.18776 0.98291 0.91805 1.22130 0.91786 1.24489 0.98860 0.95445 1.01248 1.69961 1.34744 1.01854 1.50174 0.86264 0.82828 0.77563 0.80534 1.21178 1.22542 1.22604 1.21750 0.88512 0.93407 0.95937 0.92557 0.92660 0.92586 0.91181 0.91409 0.87930 0.91757 0.82501 0.86071 0.86158 0.85434 0.93192 0.93350 0.87892 0.92627 0.92233 0.92341 0.95387 0.94933 0.96277 0.94818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.85 37.15 0.37 -0.84 16 2 C -0.15 -1.61 5.28 -26.73 -0.14 -1.75 16 3 C 0.08 1.03 4.83 -4.04 -0.02 1.01 16 4 N -0.61 -10.63 2.57 -164.89 -0.42 -11.05 16 5 C 0.50 10.51 6.75 -12.47 -0.08 10.43 16 6 O -0.38 -9.85 7.85 -13.63 -0.11 -9.96 16 7 C -0.15 -2.74 5.59 -104.84 -0.59 -3.33 16 8 C -0.09 -1.23 7.47 -39.20 -0.29 -1.52 16 9 C -0.18 -2.10 10.02 -39.63 -0.40 -2.49 16 10 C -0.07 -0.84 10.03 -39.53 -0.40 -1.23 16 11 C -0.22 -3.20 9.03 -39.47 -0.36 -3.56 16 12 C 0.18 3.26 6.67 -38.70 -0.26 3.00 16 13 O -0.27 -5.59 9.02 -37.57 -0.34 -5.93 16 14 C 0.03 0.46 9.81 101.05 0.99 1.45 16 15 C 0.14 2.49 3.75 -65.78 -0.25 2.24 16 16 H 0.08 1.17 8.01 -51.92 -0.42 0.76 16 17 C -0.16 -3.25 6.52 -24.90 -0.16 -3.41 16 18 C 0.19 4.98 4.22 -3.07 -0.01 4.97 16 19 N -0.56 -15.18 1.73 -170.00 -0.29 -15.48 16 20 C -0.18 -5.41 8.69 -15.06 -0.13 -5.54 16 21 H 0.06 1.92 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -28.57 10.31 55.49 0.57 -28.00 16 24 Si 0.89 23.99 29.55 -169.99 -5.02 18.97 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 27 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 28 C 0.13 2.92 6.16 -2.47 -0.02 2.90 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.40 7.90 -51.93 -0.41 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.81 7.18 -51.93 -0.37 0.44 16 34 H 0.10 1.26 3.84 -53.02 -0.20 1.05 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.16 1.89 2.61 -52.49 -0.14 1.75 16 37 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 38 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 39 H 0.13 1.54 6.30 -52.49 -0.33 1.21 16 40 H 0.05 0.69 7.66 -51.93 -0.40 0.29 16 41 H 0.05 0.61 7.66 -51.93 -0.40 0.22 16 42 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 43 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.74 5.93 -51.93 -0.31 1.43 16 46 H 0.03 0.82 7.50 -51.93 -0.39 0.43 16 47 H 0.24 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -35.81 372.66 -9.40 -45.21 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -7.56 Total: -1.43 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.84 Total: 2.04 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.15 Total: -54.53 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.45 Total: -15.88 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.02 Total: 18.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.81 -9.40 -45.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493974273.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.067 kcal (2) G-P(sol) polarization free energy of solvation -35.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds