Wall clock time and date at job start Tue Mar 31 2020 16:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47521 * 2 1 4 4 N 1.46500 * 109.46974 * 179.97438 * 3 2 1 5 5 C 1.34776 * 119.99818 * 100.56599 * 4 3 2 6 6 O 1.21597 * 119.99931 * 187.50742 * 5 4 3 7 7 C 1.47531 * 120.00198 * 7.50390 * 5 4 3 8 8 C 1.39711 * 120.19182 * 328.59906 * 7 5 4 9 9 C 1.37781 * 119.90817 * 179.76649 * 8 7 5 10 10 C 1.38553 * 120.30220 * 0.53136 * 9 8 7 11 11 C 1.38058 * 120.38792 * 359.69592 * 10 9 8 12 12 C 1.38705 * 120.08363 * 0.04730 * 11 10 9 13 13 O 1.35654 * 120.14970 * 179.97438 * 12 11 10 14 14 C 1.42901 * 116.99970 * 359.97438 * 13 12 11 15 15 C 1.46501 * 120.00356 * 280.55865 * 4 3 2 16 16 H 1.09007 * 110.88307 * 10.06637 * 15 4 3 17 17 C 1.55156 * 111.00619 * 246.18771 * 15 4 3 18 18 C 1.54324 * 102.93937 * 277.42740 * 17 15 4 19 19 N 1.47013 * 107.27159 * 337.80434 * 18 17 15 20 20 C 1.36944 * 125.65041 * 178.98105 * 19 18 17 21 21 H 1.07993 * 120.00126 * 179.97438 * 20 19 18 22 22 C 1.38808 * 119.99656 * 359.97438 * 20 19 18 23 23 N 1.31615 * 120.00298 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99934 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47006 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47100 * 119.99995 * 24 22 20 27 27 H 1.48505 * 109.47183 * 240.00120 * 24 22 20 28 28 C 1.47528 * 108.71790 * 358.94606 * 19 18 17 29 29 H 1.09005 * 109.46898 * 300.00037 * 1 2 3 30 30 H 1.09004 * 109.47138 * 59.99795 * 1 2 3 31 31 H 1.08997 * 109.47333 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47138 * 120.00205 * 2 1 3 33 33 H 1.09006 * 109.47190 * 239.99501 * 2 1 3 34 34 H 1.08995 * 109.47011 * 300.00035 * 3 2 1 35 35 H 1.09000 * 109.46671 * 59.99841 * 3 2 1 36 36 H 1.08000 * 120.04539 * 359.97438 * 8 7 5 37 37 H 1.08005 * 119.85275 * 180.22758 * 9 8 7 38 38 H 1.08003 * 119.80995 * 179.71876 * 10 9 8 39 39 H 1.07999 * 119.96083 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.47392 * 299.99992 * 14 13 12 41 41 H 1.09006 * 109.46830 * 60.00273 * 14 13 12 42 42 H 1.09001 * 109.47368 * 179.97438 * 14 13 12 43 43 H 1.08998 * 110.72030 * 35.79016 * 17 15 4 44 44 H 1.09000 * 110.71897 * 159.06449 * 17 15 4 45 45 H 1.08997 * 109.88175 * 97.22664 * 18 17 15 46 46 H 1.09004 * 109.88032 * 218.23775 * 18 17 15 47 47 H 0.96999 * 120.00607 * 179.97438 * 23 22 20 48 48 H 1.09002 * 110.37055 * 265.30484 * 28 19 18 49 49 H 1.09003 * 110.41270 * 142.94882 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4423 0.0006 5 6 4.1794 1.6561 -1.1466 6 8 5.3875 1.5216 -1.1757 7 6 3.4517 2.0533 -2.3669 8 6 2.1450 1.6082 -2.5821 9 6 1.4692 1.9866 -3.7216 10 6 2.0834 2.7984 -4.6615 11 6 3.3759 3.2415 -4.4638 12 6 4.0693 2.8747 -3.3199 13 8 5.3395 3.3089 -3.1244 14 6 5.9035 4.1423 -4.1390 15 6 4.2371 1.2100 1.2482 16 1 3.5626 0.8816 2.0391 17 6 5.0215 2.4780 1.6771 18 6 6.3119 2.3873 0.8354 19 7 6.4859 0.9783 0.4538 20 6 7.5031 0.4795 -0.3156 21 1 7.5424 -0.5760 -0.5406 22 6 8.4836 1.3308 -0.8062 23 7 8.4360 2.6171 -0.5316 24 14 9.8708 0.6507 -1.8563 25 1 9.6962 -0.8152 -2.0180 26 1 9.8464 1.3017 -3.1908 27 1 11.1721 0.9248 -1.1954 28 6 5.3838 0.1901 1.0374 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6641 0.9711 -1.8546 37 1 0.4578 1.6450 -3.8852 38 1 1.5478 3.0865 -5.5541 39 1 3.8478 3.8743 -5.2008 40 1 5.9213 3.6014 -5.0852 41 1 5.2993 5.0431 -4.2466 42 1 6.9201 4.4184 -3.8588 43 1 4.4620 3.3799 1.4292 44 1 5.2526 2.4467 2.7419 45 1 6.2158 3.0043 -0.0579 46 1 7.1644 2.7215 1.4268 47 1 9.1214 3.2119 -0.8742 48 1 5.6888 -0.2403 1.9912 49 1 5.0715 -0.5949 0.3486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493974273.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:20 Heat of formation + Delta-G solvation = 43.047123 kcal Electronic energy + Delta-G solvation = -31526.382042 eV Core-core repulsion = 27650.365455 eV Total energy + Delta-G solvation = -3876.016587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.80251 -40.47064 -38.59697 -37.41790 -36.96270 -34.47328 -33.04339 -32.07656 -30.99205 -30.71173 -28.96854 -28.15471 -26.87333 -26.32320 -24.55361 -23.26802 -22.45994 -22.11908 -21.69950 -19.93863 -18.81636 -18.58343 -17.97150 -17.36738 -16.78131 -16.66600 -16.50883 -16.34999 -16.13227 -15.61393 -15.55871 -15.12360 -14.53616 -14.43939 -14.18315 -13.97705 -13.76656 -13.61031 -13.50620 -13.20916 -13.10398 -12.83224 -12.79179 -12.71248 -12.53943 -12.37439 -12.29199 -12.04269 -11.97193 -11.92058 -11.86317 -11.62482 -11.60046 -11.34797 -11.27419 -10.49657 -10.09723 -9.72773 -9.17009 -9.08355 -8.20130 -7.56465 -4.77790 0.11603 0.49124 1.39859 1.42443 1.50267 2.26880 2.32629 2.47638 2.62748 2.97805 3.61388 3.73514 3.87185 3.89751 3.99228 4.04800 4.09813 4.19512 4.22552 4.28334 4.31992 4.38580 4.42701 4.46185 4.52845 4.62729 4.64349 4.68110 4.75747 4.80244 4.92146 4.96951 5.01644 5.05750 5.10791 5.18524 5.29415 5.32453 5.34739 5.41202 5.51084 5.57481 5.59565 5.86104 5.89160 6.06463 6.11767 6.47512 6.54840 6.87321 7.38608 7.93658 8.09790 8.74507 9.55540 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.006220 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.482461 B = 4500.298091 C = 6277.029541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.143 4.143 3 C 0.077 3.923 4 N -0.607 5.607 5 C 0.492 3.508 6 O -0.447 6.447 7 C -0.189 4.189 8 C -0.083 4.083 9 C -0.165 4.165 10 C -0.058 4.058 11 C -0.227 4.227 12 C 0.142 3.858 13 O -0.320 6.320 14 C 0.027 3.973 15 C 0.149 3.851 16 H 0.129 0.871 17 C -0.147 4.147 18 C 0.206 3.794 19 N -0.575 5.575 20 C -0.183 4.183 21 H 0.055 0.945 22 C -0.062 4.062 23 N -0.941 5.941 24 Si 0.952 3.048 25 H -0.277 1.277 26 H -0.303 1.303 27 H -0.295 1.295 28 C 0.127 3.873 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.087 0.913 36 H 0.176 0.824 37 H 0.166 0.834 38 H 0.163 0.837 39 H 0.145 0.855 40 H 0.065 0.935 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.014 0.986 46 H -0.018 1.018 47 H 0.230 0.770 48 H 0.033 0.967 49 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.299 0.633 -4.050 23.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C -0.044 4.044 4 N -0.344 5.344 5 C 0.278 3.722 6 O -0.315 6.315 7 C -0.193 4.193 8 C -0.101 4.101 9 C -0.182 4.182 10 C -0.076 4.076 11 C -0.245 4.245 12 C 0.094 3.906 13 O -0.233 6.233 14 C -0.067 4.067 15 C 0.045 3.955 16 H 0.147 0.853 17 C -0.187 4.187 18 C 0.081 3.919 19 N -0.299 5.299 20 C -0.313 4.313 21 H 0.073 0.927 22 C -0.254 4.254 23 N -0.593 5.593 24 Si 0.784 3.216 25 H -0.202 1.202 26 H -0.232 1.232 27 H -0.223 1.223 28 C 0.001 3.999 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.127 0.873 35 H 0.105 0.895 36 H 0.193 0.807 37 H 0.183 0.817 38 H 0.180 0.820 39 H 0.163 0.837 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.032 0.968 46 H 0.000 1.000 47 H 0.040 0.960 48 H 0.051 0.949 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -22.264 0.573 -4.017 22.631 hybrid contribution 1.757 0.081 -0.953 2.001 sum -20.506 0.654 -4.970 21.110 Atomic orbital electron populations 1.21714 0.92826 1.02695 1.03075 1.21982 0.97745 0.96220 1.02230 1.22640 0.78521 0.97992 1.05277 1.47754 1.06744 1.73265 1.06607 1.18975 0.88658 0.80341 0.84237 1.91636 1.12531 1.44337 1.83015 1.19827 0.96980 1.05328 0.97142 1.22322 0.91006 0.98170 0.98560 1.21441 1.02143 1.00841 0.93806 1.21507 0.92761 0.93924 0.99444 1.21469 0.98008 1.07379 0.97680 1.19590 0.84036 0.92941 0.93985 1.86436 1.26088 1.64115 1.46612 1.23146 0.99138 0.93760 0.90673 1.22162 0.92778 0.94267 0.86313 0.85313 1.23228 0.97203 0.98140 1.00095 1.20667 0.91227 0.86199 0.93780 1.44205 1.25384 1.03291 1.56980 1.18954 0.99021 0.91398 1.21928 0.92698 1.25143 1.01342 0.95833 1.03048 1.70205 1.35076 1.02747 1.51296 0.85351 0.80301 0.77276 0.78656 1.20176 1.23167 1.22280 1.21935 0.88723 0.93785 0.95495 0.91433 0.91398 0.91884 0.91488 0.92955 0.87307 0.89458 0.80742 0.81693 0.81983 0.83726 0.91636 0.90511 0.89966 0.91840 0.89868 0.96804 0.99968 0.95991 0.94948 0.96059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.85 71.98 0.71 -0.95 16 2 C -0.14 -2.60 5.28 30.59 0.16 -2.44 16 3 C 0.08 1.71 4.83 86.38 0.42 2.12 16 4 N -0.61 -20.63 2.57 -793.85 -2.04 -22.67 16 5 C 0.49 21.34 6.75 86.69 0.59 21.93 16 6 O -0.45 -24.78 7.85 14.06 0.11 -24.67 16 7 C -0.19 -6.90 5.59 -20.01 -0.11 -7.01 16 8 C -0.08 -2.10 7.47 22.52 0.17 -1.93 16 9 C -0.16 -3.12 10.02 22.24 0.22 -2.89 16 10 C -0.06 -1.15 10.03 22.30 0.22 -0.93 16 11 C -0.23 -6.10 9.03 22.34 0.20 -5.89 16 12 C 0.14 5.32 6.67 22.84 0.15 5.47 16 13 O -0.32 -14.49 9.02 -71.61 -0.65 -15.14 16 14 C 0.03 0.92 9.81 113.37 1.11 2.04 16 15 C 0.15 5.25 3.75 46.38 0.17 5.43 16 16 H 0.13 3.31 8.01 -2.38 -0.02 3.29 16 17 C -0.15 -5.92 6.52 31.78 0.21 -5.72 16 18 C 0.21 11.46 4.22 86.73 0.37 11.83 16 19 N -0.57 -32.52 1.73 -691.75 -1.19 -33.71 16 20 C -0.18 -11.53 8.69 84.03 0.73 -10.79 16 21 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 22 C -0.06 -3.95 5.49 84.86 0.47 -3.48 16 23 N -0.94 -62.92 10.31 21.65 0.22 -62.70 16 24 Si 0.95 52.05 29.55 68.60 2.03 54.08 16 25 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.30 -16.71 7.11 99.48 0.71 -16.00 16 27 H -0.30 -15.82 7.11 99.48 0.71 -15.12 16 28 C 0.13 5.68 6.16 86.83 0.53 6.22 16 29 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 30 H 0.07 0.62 7.90 -2.38 -0.02 0.60 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.05 1.12 7.18 -2.38 -0.02 1.11 16 34 H 0.11 2.32 3.84 -3.41 -0.01 2.30 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.18 3.63 2.61 -2.91 -0.01 3.62 16 37 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 38 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 39 H 0.15 3.23 6.30 -2.91 -0.02 3.21 16 40 H 0.07 1.89 7.66 -2.39 -0.02 1.87 16 41 H 0.08 2.02 7.66 -2.38 -0.02 2.00 16 42 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 44 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 45 H 0.01 0.90 5.93 -2.39 -0.01 0.88 16 46 H -0.02 -1.12 7.50 -2.38 -0.02 -1.13 16 47 H 0.23 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -88.60 372.66 5.74 -82.86 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.94 Total: 8.98 kcal Atomic # 6 Polarization: 6.66 SS G_CDS: 6.32 Total: 12.98 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -3.01 Total: -119.08 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.54 Total: -39.82 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 2.03 Total: 54.08 kcal Total: -88.60 5.74 -82.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493974273.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.905 kcal (2) G-P(sol) polarization free energy of solvation -88.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds