Wall clock time and date at job start Tue Mar 31 2020 16:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99975 * 2 1 4 4 C 1.38729 * 120.05760 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94429 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05390 * 0.02632 * 5 4 3 7 7 C 1.50699 * 119.94095 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47574 * 89.99497 * 7 6 5 9 9 O 1.21284 * 119.99594 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00165 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99984 * 185.20093 * 10 8 7 12 12 C 1.52995 * 109.47152 * 294.93412 * 11 10 8 13 13 C 1.53008 * 109.47075 * 54.92844 * 11 10 8 14 14 N 1.46504 * 109.46913 * 60.00369 * 13 11 10 15 15 C 1.36935 * 120.00140 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99999 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00149 * 180.02562 * 15 14 13 18 18 N 1.31624 * 120.00055 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00027 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46967 * 59.99948 * 19 17 15 21 21 H 1.48505 * 109.46836 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47165 * 299.99541 * 19 17 15 23 23 C 1.52991 * 109.47245 * 174.93032 * 11 10 8 24 24 C 1.53006 * 117.51963 * 345.38853 * 23 11 10 25 25 C 1.53001 * 60.00094 * 107.48019 * 24 23 11 26 26 C 1.38258 * 120.11347 * 0.24502 * 6 5 4 27 27 C 1.38142 * 120.05732 * 359.45726 * 26 6 5 28 28 H 1.09005 * 109.46886 * 299.99835 * 1 2 3 29 29 H 1.08996 * 109.47355 * 60.00150 * 1 2 3 30 30 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.02629 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.96761 * 180.02562 * 5 4 3 33 33 H 1.09006 * 109.47336 * 329.99656 * 7 6 5 34 34 H 1.09000 * 109.47061 * 209.99765 * 7 6 5 35 35 H 0.96992 * 119.99821 * 5.20084 * 10 8 7 36 36 H 1.08998 * 109.47209 * 299.99698 * 12 11 10 37 37 H 1.09003 * 109.47787 * 60.00068 * 12 11 10 38 38 H 1.09006 * 109.47456 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.46876 * 179.97438 * 13 11 10 40 40 H 1.08997 * 109.47444 * 300.00028 * 13 11 10 41 41 H 0.97000 * 119.99972 * 359.97438 * 14 13 11 42 42 H 0.97000 * 120.00155 * 180.02562 * 18 17 15 43 43 H 1.09000 * 115.55486 * 199.68694 * 23 11 10 44 44 H 1.08993 * 117.49847 * 214.97187 * 24 23 11 45 45 H 1.08998 * 117.49500 * 359.97438 * 24 23 11 46 46 H 1.08999 * 117.50164 * 252.51582 * 25 24 23 47 47 H 1.08997 * 117.49735 * 107.48982 * 25 24 23 48 48 H 1.07999 * 119.97302 * 179.70423 * 26 6 5 49 49 H 1.08001 * 120.03436 * 180.24416 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 6 4.2135 5.4678 -1.4176 9 8 3.8549 4.7667 -2.3401 10 7 4.8145 6.6489 -1.6628 11 6 4.9336 7.1386 -3.0383 12 6 5.8416 6.2009 -3.8366 13 6 3.5483 7.1808 -3.6864 14 7 2.6788 8.0787 -2.9221 15 6 1.3825 8.2766 -3.3167 16 1 1.0012 7.7710 -4.1916 17 6 0.5589 9.1277 -2.5928 18 7 1.0237 9.7442 -1.5268 19 14 -1.2092 9.3981 -3.1315 20 1 -1.9339 8.1019 -3.1201 21 1 -1.8721 10.3436 -2.1976 22 1 -1.2274 9.9634 -4.5046 23 6 5.5353 8.5452 -3.0287 24 6 5.5684 9.2908 -1.6930 25 6 6.8633 8.7405 -2.2943 26 6 1.9211 3.6048 0.0078 27 6 1.2915 2.3752 0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0209 0.3800 -0.0005 32 1 5.1345 2.5751 -0.0008 33 1 4.9441 4.9378 0.5162 34 1 3.3581 5.7458 0.5177 35 1 5.1681 7.1748 -0.9285 36 1 6.8285 6.1708 -3.3750 37 1 5.4130 5.1988 -3.8436 38 1 5.9306 6.5655 -4.8600 39 1 3.6369 7.5456 -4.7098 40 1 3.1196 6.1787 -3.6934 41 1 3.0213 8.5330 -2.1365 42 1 0.4480 10.3387 -1.0207 43 1 5.3673 9.1347 -3.9300 44 1 5.4221 10.3706 -1.7157 45 1 5.1611 8.7793 -0.8209 46 1 7.3081 7.8669 -1.8178 47 1 7.5688 9.4584 -2.7125 48 1 1.3342 4.5114 0.0139 49 1 0.2129 2.3201 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495300302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:44 Heat of formation + Delta-G solvation = -3.473636 kcal Electronic energy + Delta-G solvation = -29321.509948 eV Core-core repulsion = 25443.476069 eV Total energy + Delta-G solvation = -3878.033878 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.33691 -39.84235 -38.02431 -37.00213 -34.45696 -33.24186 -32.33625 -31.13850 -30.91382 -29.85257 -27.97146 -26.34220 -25.61742 -23.27997 -22.59199 -22.20317 -21.93875 -21.62645 -20.23382 -18.75225 -18.12573 -17.20460 -17.00940 -16.27443 -15.76171 -15.66961 -15.16961 -14.80105 -14.70911 -14.43739 -14.24056 -13.79063 -13.70858 -13.44098 -13.34188 -13.23225 -12.63946 -12.44329 -12.32279 -12.17702 -12.08810 -11.96178 -11.57874 -11.40176 -11.28611 -11.20749 -10.98655 -10.84425 -10.76832 -10.71473 -10.67073 -10.12127 -9.87761 -9.84787 -9.58287 -9.23412 -8.86794 -8.72872 -8.45860 -7.99362 -6.77747 -5.69611 -2.94672 1.46427 1.52043 3.14123 3.25139 3.47217 3.51201 3.52624 3.55007 3.96772 4.09226 4.65674 4.82713 4.85111 4.86771 4.96428 5.03742 5.06587 5.15745 5.16524 5.23041 5.34392 5.35382 5.45442 5.46558 5.55312 5.64697 5.71712 5.76571 5.80099 5.81425 5.85010 6.01793 6.15207 6.21367 6.25593 6.33302 6.34826 6.39275 6.46050 6.47618 6.63093 6.66650 6.75876 6.83485 6.98791 7.21772 7.41152 7.77777 7.99025 8.50742 8.75141 9.62343 10.22414 10.59928 11.53496 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008881 B = 0.004107 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.012341 B = 6816.386537 C = 9133.325954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.322 6.322 3 C 0.120 3.880 4 C -0.154 4.154 5 C -0.068 4.068 6 C -0.093 4.093 7 C -0.101 4.101 8 C 0.524 3.476 9 O -0.525 6.525 10 N -0.719 5.719 11 C 0.201 3.799 12 C -0.153 4.153 13 C 0.141 3.859 14 N -0.724 5.724 15 C -0.228 4.228 16 H 0.066 0.934 17 C -0.016 4.016 18 N -0.936 5.936 19 Si 0.903 3.097 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.287 1.287 23 C -0.137 4.137 24 C -0.167 4.167 25 C -0.189 4.189 26 C -0.058 4.058 27 C -0.204 4.204 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.394 0.606 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.020 0.980 40 H 0.050 0.950 41 H 0.385 0.615 42 H 0.252 0.748 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.128 0.872 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.570 -12.266 5.735 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.236 6.236 3 C 0.075 3.925 4 C -0.172 4.172 5 C -0.086 4.086 6 C -0.093 4.093 7 C -0.141 4.141 8 C 0.310 3.690 9 O -0.401 6.401 10 N -0.374 5.374 11 C 0.115 3.885 12 C -0.211 4.211 13 C 0.013 3.987 14 N -0.369 5.369 15 C -0.359 4.359 16 H 0.084 0.916 17 C -0.211 4.211 18 N -0.586 5.586 19 Si 0.734 3.266 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.214 1.214 23 C -0.156 4.156 24 C -0.205 4.205 25 C -0.226 4.226 26 C -0.077 4.077 27 C -0.223 4.223 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.231 0.769 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.037 0.963 40 H 0.068 0.932 41 H 0.219 0.781 42 H 0.062 0.938 43 H 0.132 0.868 44 H 0.116 0.884 45 H 0.112 0.888 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.146 0.854 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.217 -12.966 4.969 16.666 hybrid contribution -1.162 0.987 0.274 1.550 sum 8.054 -11.979 5.243 15.358 Atomic orbital electron populations 1.23027 0.78590 1.03597 1.01543 1.86027 1.21256 1.27244 1.89026 1.19007 0.92372 0.83962 0.97175 1.20281 0.91256 0.98345 1.07342 1.20728 0.99408 0.91019 0.97488 1.19171 0.93442 0.93671 1.03042 1.20640 1.02174 0.95729 0.95579 1.20251 0.76986 0.80971 0.90839 1.90645 1.49541 1.54128 1.45740 1.46184 1.60618 1.21607 1.08977 1.20027 0.96231 0.90606 0.81607 1.22085 0.98508 1.00995 0.99562 1.21116 0.88091 0.95853 0.93676 1.42214 1.09363 1.52741 1.32550 1.19202 0.87868 1.20761 1.08092 0.91587 1.24635 0.98024 1.00398 0.98041 1.69641 1.35523 1.34051 1.19389 0.86326 0.85361 0.77387 0.77505 1.21515 1.21816 1.21441 1.22410 0.98972 0.96493 0.97687 1.22895 0.99830 1.00804 0.96948 1.23014 0.91202 1.03081 1.05313 1.20900 0.94037 0.97366 0.95357 1.21180 0.99929 0.92265 1.08901 0.92721 0.92540 0.88503 0.85562 0.85745 0.88715 0.87825 0.76922 0.93062 0.90664 0.92092 0.96252 0.93230 0.78127 0.93783 0.86790 0.88385 0.88761 0.89191 0.89083 0.85422 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.12 10.50 -19.44 -0.20 -4.32 16 3 C 0.12 1.67 6.69 -39.22 -0.26 1.41 16 4 C -0.15 -2.03 9.99 -39.43 -0.39 -2.43 16 5 C -0.07 -0.90 9.69 -39.61 -0.38 -1.28 16 6 C -0.09 -1.34 4.37 -104.61 -0.46 -1.80 16 7 C -0.10 -1.35 5.83 -29.04 -0.17 -1.52 16 8 C 0.52 8.74 7.23 -10.99 -0.08 8.66 16 9 O -0.52 -10.60 12.28 5.55 0.07 -10.53 16 10 N -0.72 -11.08 4.49 -47.61 -0.21 -11.29 16 11 C 0.20 3.34 0.52 -131.82 -0.07 3.27 16 12 C -0.15 -2.27 8.37 37.15 0.31 -1.96 16 13 C 0.14 3.04 4.89 -4.04 -0.02 3.02 16 14 N -0.72 -18.31 5.22 -59.90 -0.31 -18.62 16 15 C -0.23 -6.50 9.99 -15.06 -0.15 -6.65 16 16 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 18 N -0.94 -27.84 13.06 55.49 0.72 -27.12 16 19 Si 0.90 22.80 29.55 -169.99 -5.02 17.78 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 C -0.14 -2.08 4.48 -90.62 -0.41 -2.48 16 24 C -0.17 -2.39 8.98 -26.73 -0.24 -2.63 16 25 C -0.19 -2.25 9.53 -26.73 -0.25 -2.50 16 26 C -0.06 -0.90 9.69 -39.61 -0.38 -1.28 16 27 C -0.20 -2.89 9.04 -39.43 -0.36 -3.24 16 28 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 29 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.13 1.43 8.06 -52.48 -0.42 1.00 16 32 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 33 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.10 1.37 8.08 -51.93 -0.42 0.95 16 35 H 0.39 5.22 5.64 -40.82 -0.23 4.99 16 36 H 0.05 0.66 7.71 -51.93 -0.40 0.26 16 37 H 0.07 1.26 6.37 -51.93 -0.33 0.93 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 1.20 5.99 -51.93 -0.31 0.89 16 41 H 0.38 9.83 6.43 -40.82 -0.26 9.57 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 44 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 45 H 0.09 1.34 5.96 -51.93 -0.31 1.03 16 46 H 0.09 0.98 7.99 -51.93 -0.42 0.56 16 47 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.13 2.01 8.06 -52.49 -0.42 1.59 16 49 H 0.13 1.54 6.30 -52.49 -0.33 1.21 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -33.82 394.08 -9.02 -42.83 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: -7.58 Total: 16.07 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.42 Total: -10.73 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.20 Total: -57.03 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.14 Total: -14.85 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.82 -9.02 -42.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495300302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.360 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds