Wall clock time and date at job start Tue Mar 31 2020 16:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35905 * 116.99975 * 2 1 4 4 C 1.38729 * 120.05760 * 180.02562 * 3 2 1 5 5 C 1.38147 * 119.94429 * 180.02562 * 4 3 2 6 6 C 1.38262 * 120.05390 * 0.02632 * 5 4 3 7 7 C 1.50699 * 119.94095 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47574 * 89.99497 * 7 6 5 9 9 O 1.21284 * 119.99594 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00165 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99984 * 185.20093 * 10 8 7 12 12 C 1.52995 * 109.47152 * 294.93412 * 11 10 8 13 13 C 1.53008 * 109.47075 * 54.92844 * 11 10 8 14 14 N 1.46504 * 109.46913 * 60.00369 * 13 11 10 15 15 C 1.36935 * 120.00140 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99999 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00149 * 180.02562 * 15 14 13 18 18 N 1.31624 * 120.00055 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 120.00027 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46967 * 59.99948 * 19 17 15 21 21 H 1.48505 * 109.46836 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47165 * 299.99541 * 19 17 15 23 23 C 1.52991 * 109.47245 * 174.93032 * 11 10 8 24 24 C 1.53006 * 117.51963 * 345.38853 * 23 11 10 25 25 C 1.53001 * 60.00094 * 107.48019 * 24 23 11 26 26 C 1.38258 * 120.11347 * 0.24502 * 6 5 4 27 27 C 1.38142 * 120.05732 * 359.45726 * 26 6 5 28 28 H 1.09005 * 109.46886 * 299.99835 * 1 2 3 29 29 H 1.08996 * 109.47355 * 60.00150 * 1 2 3 30 30 H 1.08997 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.02629 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.96761 * 180.02562 * 5 4 3 33 33 H 1.09006 * 109.47336 * 329.99656 * 7 6 5 34 34 H 1.09000 * 109.47061 * 209.99765 * 7 6 5 35 35 H 0.96992 * 119.99821 * 5.20084 * 10 8 7 36 36 H 1.08998 * 109.47209 * 299.99698 * 12 11 10 37 37 H 1.09003 * 109.47787 * 60.00068 * 12 11 10 38 38 H 1.09006 * 109.47456 * 180.02562 * 12 11 10 39 39 H 1.09003 * 109.46876 * 179.97438 * 13 11 10 40 40 H 1.08997 * 109.47444 * 300.00028 * 13 11 10 41 41 H 0.97000 * 119.99972 * 359.97438 * 14 13 11 42 42 H 0.97000 * 120.00155 * 180.02562 * 18 17 15 43 43 H 1.09000 * 115.55486 * 199.68694 * 23 11 10 44 44 H 1.08993 * 117.49847 * 214.97187 * 24 23 11 45 45 H 1.08998 * 117.49500 * 359.97438 * 24 23 11 46 46 H 1.08999 * 117.50164 * 252.51582 * 25 24 23 47 47 H 1.08997 * 117.49735 * 107.48982 * 25 24 23 48 48 H 1.07999 * 119.97302 * 179.70423 * 26 6 5 49 49 H 1.08001 * 120.03436 * 180.24416 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 6 4.2135 5.4678 -1.4176 9 8 3.8549 4.7667 -2.3401 10 7 4.8145 6.6489 -1.6628 11 6 4.9336 7.1386 -3.0383 12 6 5.8416 6.2009 -3.8366 13 6 3.5483 7.1808 -3.6864 14 7 2.6788 8.0787 -2.9221 15 6 1.3825 8.2766 -3.3167 16 1 1.0012 7.7710 -4.1916 17 6 0.5589 9.1277 -2.5928 18 7 1.0237 9.7442 -1.5268 19 14 -1.2092 9.3981 -3.1315 20 1 -1.9339 8.1019 -3.1201 21 1 -1.8721 10.3436 -2.1976 22 1 -1.2274 9.9634 -4.5046 23 6 5.5353 8.5452 -3.0287 24 6 5.5684 9.2908 -1.6930 25 6 6.8633 8.7405 -2.2943 26 6 1.9211 3.6048 0.0078 27 6 1.2915 2.3752 0.0011 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0209 0.3800 -0.0005 32 1 5.1345 2.5751 -0.0008 33 1 4.9441 4.9378 0.5162 34 1 3.3581 5.7458 0.5177 35 1 5.1681 7.1748 -0.9285 36 1 6.8285 6.1708 -3.3750 37 1 5.4130 5.1988 -3.8436 38 1 5.9306 6.5655 -4.8600 39 1 3.6369 7.5456 -4.7098 40 1 3.1196 6.1787 -3.6934 41 1 3.0213 8.5330 -2.1365 42 1 0.4480 10.3387 -1.0207 43 1 5.3673 9.1347 -3.9300 44 1 5.4221 10.3706 -1.7157 45 1 5.1611 8.7793 -0.8209 46 1 7.3081 7.8669 -1.8178 47 1 7.5688 9.4584 -2.7125 48 1 1.3342 4.5114 0.0139 49 1 0.2129 2.3201 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495300302.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:43 Heat of formation + Delta-G solvation = -24.436438 kcal Electronic energy + Delta-G solvation = -29322.418963 eV Core-core repulsion = 25443.476069 eV Total energy + Delta-G solvation = -3878.942894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.55257 -40.93587 -39.17021 -38.12848 -36.24833 -34.74036 -33.61770 -32.72169 -32.01131 -31.42829 -28.86484 -27.49513 -27.27975 -24.83972 -23.87764 -23.60989 -23.13289 -22.71612 -21.38871 -20.16202 -19.14623 -19.08403 -18.39819 -17.27198 -17.08234 -16.64926 -16.50920 -16.19536 -16.02552 -15.86450 -15.37176 -15.25457 -15.17596 -14.80663 -14.63000 -14.39669 -14.01262 -13.88972 -13.75024 -13.44440 -13.30601 -13.00830 -12.88980 -12.80184 -12.59208 -12.57805 -12.37754 -12.27063 -12.20376 -12.02765 -11.92575 -11.76600 -11.71512 -11.10052 -11.00074 -10.92622 -10.46540 -9.93152 -9.81673 -9.04864 -8.89384 -7.92843 -5.17689 0.41240 0.42944 1.43464 1.45457 1.51705 1.84949 2.32917 2.38689 2.55754 2.86821 2.98693 3.39256 3.65977 3.78715 3.83318 3.86823 3.95369 4.01733 4.10568 4.18583 4.24353 4.34859 4.35276 4.39501 4.44642 4.58773 4.62183 4.67709 4.70030 4.74754 4.78560 4.81915 4.89016 4.90514 4.99608 5.08984 5.09954 5.23817 5.28404 5.31026 5.33923 5.38728 5.40500 5.48637 5.68372 5.79328 5.82305 6.30019 6.43083 6.75724 7.38044 7.48725 8.14370 8.46446 9.29558 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008881 B = 0.004107 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3152.012341 B = 6816.386537 C = 9133.325954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.111 3.889 4 C -0.159 4.159 5 C -0.067 4.067 6 C -0.106 4.106 7 C -0.095 4.095 8 C 0.516 3.484 9 O -0.565 6.565 10 N -0.711 5.711 11 C 0.210 3.790 12 C -0.144 4.144 13 C 0.141 3.859 14 N -0.726 5.726 15 C -0.244 4.244 16 H 0.058 0.942 17 C -0.064 4.064 18 N -0.959 5.959 19 Si 0.963 3.037 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.281 1.281 23 C -0.160 4.160 24 C -0.181 4.181 25 C -0.145 4.145 26 C -0.084 4.084 27 C -0.214 4.214 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.406 0.594 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.012 0.988 40 H 0.022 0.978 41 H 0.382 0.618 42 H 0.251 0.749 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.093 0.907 46 H 0.110 0.890 47 H 0.111 0.889 48 H 0.110 0.890 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.310 -12.829 6.449 18.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.246 6.246 3 C 0.066 3.934 4 C -0.178 4.178 5 C -0.085 4.085 6 C -0.106 4.106 7 C -0.134 4.134 8 C 0.304 3.696 9 O -0.443 6.443 10 N -0.366 5.366 11 C 0.123 3.877 12 C -0.202 4.202 13 C 0.014 3.986 14 N -0.370 5.370 15 C -0.376 4.376 16 H 0.076 0.924 17 C -0.257 4.257 18 N -0.609 5.609 19 Si 0.792 3.208 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.207 1.207 23 C -0.179 4.179 24 C -0.218 4.218 25 C -0.182 4.182 26 C -0.102 4.102 27 C -0.233 4.233 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.170 0.830 33 H 0.155 0.845 34 H 0.120 0.880 35 H 0.245 0.755 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.040 0.960 41 H 0.216 0.784 42 H 0.059 0.941 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.111 0.889 46 H 0.129 0.871 47 H 0.129 0.871 48 H 0.128 0.872 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.977 -13.525 5.687 18.324 hybrid contribution -1.751 1.113 0.010 2.075 sum 9.226 -12.411 5.697 16.481 Atomic orbital electron populations 1.23298 0.76867 1.05530 1.01823 1.86014 1.23097 1.26631 1.88857 1.19205 0.92974 0.84219 0.97050 1.20639 0.91295 0.99311 1.06544 1.21040 1.00743 0.90362 0.96343 1.19362 0.93190 0.94767 1.03313 1.20665 1.04170 0.95033 0.93546 1.20875 0.76143 0.80778 0.91827 1.90633 1.51078 1.55375 1.47245 1.46129 1.60245 1.21318 1.08939 1.19809 0.93429 0.92318 0.82108 1.21996 0.99107 0.99115 0.99994 1.21146 0.90609 0.93288 0.93584 1.42250 1.08881 1.53119 1.32722 1.19474 0.89506 1.20702 1.07965 0.92404 1.25322 1.01601 1.00468 0.98328 1.69765 1.36576 1.34476 1.20133 0.85378 0.80948 0.77141 0.77285 1.21318 1.21528 1.20745 1.22278 1.02515 0.95407 0.97720 1.22911 1.02335 1.00255 0.96339 1.23091 0.89687 1.03374 1.02006 1.20955 0.94892 0.97241 0.97162 1.21319 1.00686 0.92185 1.09086 0.91887 0.92822 0.85792 0.83565 0.82994 0.84532 0.88045 0.75471 0.90269 0.92791 0.91426 0.97018 0.96010 0.78380 0.94051 0.88259 0.89311 0.88851 0.87150 0.87113 0.87168 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.33 -8.22 10.50 -92.48 -0.97 -9.19 16 3 C 0.11 3.05 6.69 22.51 0.15 3.20 16 4 C -0.16 -4.02 9.99 22.37 0.22 -3.80 16 5 C -0.07 -1.66 9.69 22.25 0.22 -1.44 16 6 C -0.11 -3.02 4.37 -19.85 -0.09 -3.11 16 7 C -0.09 -2.43 5.83 29.10 0.17 -2.26 16 8 C 0.52 17.06 7.23 87.66 0.63 17.69 16 9 O -0.56 -23.26 12.28 -3.04 -0.04 -23.30 16 10 N -0.71 -21.24 4.49 -422.94 -1.90 -23.14 16 11 C 0.21 6.86 0.52 3.60 0.00 6.86 16 12 C -0.14 -4.09 8.37 71.98 0.60 -3.49 16 13 C 0.14 6.30 4.89 86.38 0.42 6.72 16 14 N -0.73 -37.72 5.22 -343.44 -1.79 -39.51 16 15 C -0.24 -14.29 9.99 84.03 0.84 -13.45 16 16 H 0.06 3.40 7.83 -2.91 -0.02 3.38 16 17 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 18 N -0.96 -57.64 13.06 21.65 0.28 -57.35 16 19 Si 0.96 47.39 29.55 68.60 2.03 49.42 16 20 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 22 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 23 C -0.16 -4.68 4.48 -10.79 -0.05 -4.73 16 24 C -0.18 -4.92 8.98 30.60 0.27 -4.65 16 25 C -0.14 -2.95 9.53 30.60 0.29 -2.66 16 26 C -0.08 -2.68 9.69 22.25 0.22 -2.46 16 27 C -0.21 -6.20 9.04 22.37 0.20 -6.00 16 28 H 0.06 0.98 7.66 -2.38 -0.02 0.96 16 29 H 0.05 0.95 7.66 -2.39 -0.02 0.93 16 30 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 32 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 33 H 0.14 2.29 8.08 -2.38 -0.02 2.27 16 34 H 0.10 2.65 8.08 -2.39 -0.02 2.64 16 35 H 0.41 10.03 5.64 -92.71 -0.52 9.51 16 36 H 0.08 1.80 7.71 -2.39 -0.02 1.78 16 37 H 0.05 1.79 6.37 -2.39 -0.02 1.77 16 38 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 40 H 0.02 1.11 5.99 -2.39 -0.01 1.10 16 41 H 0.38 19.96 6.43 -92.71 -0.60 19.36 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 44 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.09 2.53 5.96 -2.39 -0.01 2.51 16 46 H 0.11 1.86 7.99 -2.39 -0.02 1.84 16 47 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 49 H 0.14 3.44 6.30 -2.91 -0.02 3.42 16 Total: -1.00 -74.76 394.08 3.14 -71.61 By element: Atomic # 1 Polarization: 47.02 SS G_CDS: -0.15 Total: 46.87 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 5.69 Total: -15.40 kcal Atomic # 7 Polarization: -116.60 SS G_CDS: -3.41 Total: -120.01 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.01 Total: -32.49 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -74.76 3.14 -71.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495300302.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.178 kcal (2) G-P(sol) polarization free energy of solvation -74.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds