Wall clock time and date at job start Tue Mar 31 2020 16:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 H 1.08998 * 109.47147 * 55.00180 * 3 2 1 5 5 O 1.42905 * 109.47084 * 295.00292 * 3 2 1 6 6 C 1.35895 * 116.99894 * 94.13588 * 5 3 2 7 7 C 1.38754 * 120.05808 * 2.29940 * 6 5 3 8 8 C 1.38124 * 119.94454 * 180.02562 * 7 6 5 9 9 C 1.38296 * 120.05549 * 359.97438 * 8 7 6 10 10 C 1.38244 * 120.11083 * 0.02562 * 9 8 7 11 11 C 1.38170 * 120.05448 * 359.76135 * 10 9 8 12 12 C 1.50701 * 120.02503 * 180.25258 * 11 10 9 13 13 C 1.50698 * 109.47255 * 174.99947 * 3 2 1 14 14 O 1.21282 * 120.00000 * 115.00152 * 13 3 2 15 15 N 1.34770 * 120.00273 * 295.00340 * 13 3 2 16 16 C 1.46499 * 120.00449 * 179.97438 * 15 13 3 17 17 H 1.09009 * 112.84641 * 23.80467 * 16 15 13 18 18 C 1.53782 * 113.61536 * 154.99676 * 16 15 13 19 19 C 1.53779 * 87.07816 * 139.98443 * 18 16 15 20 20 H 1.09001 * 113.61466 * 219.93533 * 19 18 16 21 21 N 1.46505 * 113.61525 * 89.11600 * 19 18 16 22 22 C 1.36937 * 119.99921 * 154.99669 * 21 19 18 23 23 H 1.08007 * 120.00402 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99901 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00150 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00100 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47154 * 89.99968 * 26 24 22 28 28 H 1.48501 * 109.47188 * 209.99931 * 26 24 22 29 29 H 1.48495 * 109.47162 * 330.00033 * 26 24 22 30 30 C 1.53775 * 87.08329 * 334.56789 * 19 18 16 31 31 H 1.08998 * 109.46630 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47104 * 299.99900 * 1 2 3 33 33 H 1.08999 * 109.46924 * 59.99926 * 1 2 3 34 34 H 1.09000 * 109.47362 * 240.00838 * 2 1 3 35 35 H 1.08996 * 109.47602 * 120.00344 * 2 1 3 36 36 H 1.07998 * 120.02899 * 0.02578 * 7 6 5 37 37 H 1.07999 * 119.96978 * 180.02562 * 8 7 6 38 38 H 1.07997 * 119.94260 * 180.02562 * 9 8 7 39 39 H 1.07998 * 119.97004 * 180.02562 * 10 9 8 40 40 H 1.09004 * 109.47395 * 270.23836 * 12 11 10 41 41 H 1.08994 * 109.47201 * 30.23682 * 12 11 10 42 42 H 1.09001 * 109.47018 * 150.24084 * 12 11 10 43 43 H 0.97005 * 120.00116 * 359.97438 * 15 13 3 44 44 H 1.08999 * 113.61450 * 254.52970 * 18 16 15 45 45 H 1.08997 * 113.61673 * 25.43910 * 18 16 15 46 46 H 0.97002 * 119.99949 * 335.00451 * 21 19 18 47 47 H 0.96996 * 120.00335 * 180.02562 * 25 24 22 48 48 H 1.09002 * 113.61712 * 270.88654 * 30 19 18 49 49 H 1.09004 * 113.61750 * 139.97964 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5058 2.7956 -1.2114 7 6 -0.2248 2.9195 -0.0383 8 6 -1.3998 3.6455 -0.0312 9 6 -1.8480 4.2491 -1.1919 10 6 -1.1220 4.1272 -2.3620 11 6 0.0564 3.4057 -2.3732 12 6 0.8503 3.2780 -3.6478 13 6 3.5419 1.4444 0.1238 14 8 4.2250 1.8612 -0.7875 15 7 4.1260 0.9828 1.2473 16 6 5.5861 0.9841 1.3675 17 1 6.0633 1.7207 0.7210 18 6 6.0844 1.0259 2.8217 19 6 7.1703 0.0238 2.3955 20 1 7.3639 -0.7517 3.1366 21 7 8.3952 0.6596 1.9039 22 6 9.5884 -0.0088 1.9725 23 1 9.6265 -1.0048 2.3885 24 6 10.7492 0.5938 1.5072 25 7 11.8962 -0.0484 1.5735 26 14 10.6836 2.3166 0.7883 27 1 10.8959 3.3125 1.8692 28 1 11.7467 2.4657 -0.2378 29 1 9.3561 2.5414 0.1619 30 6 6.2130 -0.4171 1.2757 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.1250 2.4486 0.8685 37 1 -1.9686 3.7425 0.8817 38 1 -2.7668 4.8167 -1.1842 39 1 -1.4739 4.5999 -3.2670 40 1 0.5154 2.3986 -4.1979 41 1 0.7011 4.1677 -4.2595 42 1 1.9086 3.1753 -3.4079 43 1 3.5797 0.6498 1.9764 44 1 6.4794 1.9970 3.1202 45 1 5.3721 0.6188 3.5393 46 1 8.3610 1.5540 1.5300 47 1 12.7073 0.3728 1.2487 48 1 5.5357 -1.2186 1.5705 49 1 6.7117 -0.6109 0.3260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566805136.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:37 Heat of formation + Delta-G solvation = -13.085831 kcal Electronic energy + Delta-G solvation = -28417.302693 eV Core-core repulsion = 24538.851999 eV Total energy + Delta-G solvation = -3878.450694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.11132 -39.83214 -38.43370 -37.40033 -34.55727 -33.95285 -32.87008 -32.47062 -30.56873 -30.33426 -28.03896 -26.91865 -25.27961 -24.49235 -23.46829 -22.70935 -21.88905 -21.77702 -20.34643 -19.10542 -18.58708 -17.71936 -17.37292 -16.37467 -16.21190 -15.96725 -15.74448 -14.97198 -14.84659 -14.71810 -14.39415 -14.18750 -14.03593 -13.76419 -13.42598 -13.13449 -12.95759 -12.73844 -12.61296 -12.50044 -12.43384 -12.22843 -12.20919 -12.14211 -12.09092 -11.70509 -11.51648 -11.28849 -10.97269 -10.87587 -10.80595 -10.44177 -10.30189 -9.95446 -9.70779 -9.59366 -9.11807 -8.99078 -8.86756 -8.36006 -7.33553 -5.81001 -3.18024 0.99993 1.13386 2.43894 2.48803 3.37642 3.37930 3.42625 3.46077 3.47497 4.21999 4.33496 4.41403 4.48863 4.56800 4.58707 4.74755 4.77437 4.84590 4.98572 5.00072 5.02262 5.08670 5.15348 5.22348 5.31307 5.37589 5.39927 5.50965 5.51860 5.58201 5.63804 5.66005 5.73297 5.82673 5.93937 6.00191 6.02190 6.02541 6.16594 6.18115 6.23675 6.41730 6.48427 6.51982 6.62247 6.83465 7.08411 7.44980 7.94971 8.14898 8.38095 9.15196 9.87708 10.05690 11.36733 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002370 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.605893 B =11809.724068 C =12526.178018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.138 4.138 3 C 0.064 3.936 4 H 0.101 0.899 5 O -0.277 6.277 6 C 0.133 3.867 7 C -0.209 4.209 8 C -0.086 4.086 9 C -0.157 4.157 10 C -0.084 4.084 11 C -0.114 4.114 12 C -0.109 4.109 13 C 0.511 3.489 14 O -0.514 6.514 15 N -0.712 5.712 16 C 0.122 3.878 17 H 0.111 0.889 18 C -0.165 4.165 19 C 0.177 3.823 20 H 0.078 0.922 21 N -0.729 5.729 22 C -0.250 4.250 23 H 0.093 0.907 24 C 0.008 3.992 25 N -0.930 5.930 26 Si 0.881 3.119 27 H -0.283 1.283 28 H -0.289 1.289 29 H -0.275 1.275 30 C -0.182 4.182 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.075 0.925 43 H 0.397 0.603 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.363 0.637 47 H 0.261 0.739 48 H 0.074 0.926 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.238 4.606 -1.928 32.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.176 4.176 3 C 0.004 3.996 4 H 0.118 0.882 5 O -0.189 6.189 6 C 0.087 3.913 7 C -0.228 4.228 8 C -0.104 4.104 9 C -0.175 4.175 10 C -0.102 4.102 11 C -0.115 4.115 12 C -0.166 4.166 13 C 0.294 3.706 14 O -0.388 6.388 15 N -0.365 5.365 16 C 0.019 3.981 17 H 0.129 0.871 18 C -0.205 4.205 19 C 0.065 3.935 20 H 0.096 0.904 21 N -0.370 5.370 22 C -0.379 4.379 23 H 0.111 0.889 24 C -0.188 4.188 25 N -0.577 5.577 26 Si 0.711 3.289 27 H -0.210 1.210 28 H -0.215 1.215 29 H -0.201 1.201 30 C -0.224 4.224 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.231 0.769 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.196 0.804 47 H 0.071 0.929 48 H 0.093 0.907 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -31.339 4.724 -2.736 31.811 hybrid contribution -0.364 1.055 0.038 1.116 sum -31.703 5.778 -2.698 32.338 Atomic orbital electron populations 1.21946 0.94414 1.02544 1.02413 1.21995 0.97327 0.93919 1.04387 1.22413 0.93528 0.95310 0.88366 0.88200 1.86232 1.36926 1.62531 1.33249 1.18884 0.86049 0.92434 0.93930 1.21301 0.98237 1.05680 0.97557 1.20896 0.95319 0.95955 0.98274 1.21033 1.01006 1.02480 0.93019 1.20903 0.93338 0.97574 0.98381 1.19307 0.97064 1.00810 0.94335 1.20652 1.00506 1.01863 0.93559 1.20182 0.88913 0.78273 0.83184 1.90768 1.64632 1.44973 1.38461 1.46007 1.08368 1.64460 1.17630 1.22725 0.77414 0.99777 0.98197 0.87109 1.23927 0.99631 1.01942 0.94973 1.20850 0.84871 0.93908 0.93895 0.90382 1.42553 1.03752 1.17091 1.73560 1.19080 0.83425 1.00218 1.35188 0.88943 1.24674 0.95313 0.97985 1.00849 1.69694 0.98273 1.37626 1.52147 0.86597 0.77321 0.85805 0.79165 1.20953 1.21550 1.20106 1.24291 0.99674 0.95299 1.03142 0.91857 0.92280 0.91987 0.89901 0.89676 0.85151 0.85891 0.86003 0.85453 0.91382 0.91729 0.90568 0.76874 0.90875 0.89785 0.80368 0.92933 0.90735 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 8.45 37.16 0.31 -0.74 16 2 C -0.14 -1.11 5.61 -26.73 -0.15 -1.26 16 3 C 0.06 0.66 2.57 -27.88 -0.07 0.58 16 4 H 0.10 0.79 5.37 -51.93 -0.28 0.51 16 5 O -0.28 -3.50 8.25 -39.27 -0.32 -3.82 16 6 C 0.13 1.44 5.30 -39.22 -0.21 1.24 16 7 C -0.21 -1.82 7.16 -39.43 -0.28 -2.11 16 8 C -0.09 -0.66 10.04 -39.60 -0.40 -1.06 16 9 C -0.16 -1.19 10.04 -39.56 -0.40 -1.59 16 10 C -0.08 -0.70 9.70 -39.60 -0.38 -1.09 16 11 C -0.11 -1.18 5.89 -104.47 -0.62 -1.80 16 12 C -0.11 -1.06 9.79 36.01 0.35 -0.71 16 13 C 0.51 7.04 7.18 -10.99 -0.08 6.96 16 14 O -0.51 -9.80 16.11 -14.30 -0.23 -10.03 16 15 N -0.71 -8.31 5.25 -53.02 -0.28 -8.59 16 16 C 0.12 1.84 4.12 -67.12 -0.28 1.57 16 17 H 0.11 2.04 7.46 -51.92 -0.39 1.65 16 18 C -0.16 -2.31 7.58 -25.92 -0.20 -2.50 16 19 C 0.18 3.21 4.56 -67.12 -0.31 2.90 16 20 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 21 N -0.73 -16.99 5.11 -52.64 -0.27 -17.26 16 22 C -0.25 -6.96 10.45 -15.06 -0.16 -7.12 16 23 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 24 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 25 N -0.93 -29.14 13.97 55.49 0.78 -28.37 16 26 Si 0.88 22.36 27.74 -169.99 -4.71 17.65 16 27 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 29 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 30 C -0.18 -2.95 7.68 -25.92 -0.20 -3.15 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.32 6.80 -51.93 -0.35 -0.03 16 33 H 0.06 0.52 6.27 -51.93 -0.33 0.19 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.52 7.77 -51.93 -0.40 0.11 16 36 H 0.13 0.90 4.54 -52.49 -0.24 0.67 16 37 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 39 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 42 H 0.08 0.91 7.53 -51.93 -0.39 0.51 16 43 H 0.40 3.12 8.43 -40.82 -0.34 2.77 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 46 H 0.36 8.46 5.76 -40.82 -0.24 8.23 16 47 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 48 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 LS Contribution 392.43 15.07 5.91 5.91 Total: -1.00 -34.92 392.43 -9.89 -44.81 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -7.62 Total: 9.42 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -3.15 Total: -9.72 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.23 Total: -54.22 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.55 Total: -13.85 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.92 -9.89 -44.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566805136.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.724 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds