Wall clock time and date at job start Tue Mar 31 2020 16:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 H 1.08998 * 109.47147 * 55.00180 * 3 2 1 5 5 O 1.42905 * 109.47084 * 295.00292 * 3 2 1 6 6 C 1.35895 * 116.99894 * 94.13588 * 5 3 2 7 7 C 1.38754 * 120.05808 * 2.29940 * 6 5 3 8 8 C 1.38124 * 119.94454 * 180.02562 * 7 6 5 9 9 C 1.38296 * 120.05549 * 359.97438 * 8 7 6 10 10 C 1.38244 * 120.11083 * 0.02562 * 9 8 7 11 11 C 1.38170 * 120.05448 * 359.76135 * 10 9 8 12 12 C 1.50701 * 120.02503 * 180.25258 * 11 10 9 13 13 C 1.50698 * 109.47255 * 174.99947 * 3 2 1 14 14 O 1.21282 * 120.00000 * 115.00152 * 13 3 2 15 15 N 1.34770 * 120.00273 * 295.00340 * 13 3 2 16 16 C 1.46499 * 120.00449 * 179.97438 * 15 13 3 17 17 H 1.09009 * 112.84641 * 23.80467 * 16 15 13 18 18 C 1.53782 * 113.61536 * 154.99676 * 16 15 13 19 19 C 1.53779 * 87.07816 * 139.98443 * 18 16 15 20 20 H 1.09001 * 113.61466 * 219.93533 * 19 18 16 21 21 N 1.46505 * 113.61525 * 89.11600 * 19 18 16 22 22 C 1.36937 * 119.99921 * 154.99669 * 21 19 18 23 23 H 1.08007 * 120.00402 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99901 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00150 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 120.00100 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47154 * 89.99968 * 26 24 22 28 28 H 1.48501 * 109.47188 * 209.99931 * 26 24 22 29 29 H 1.48495 * 109.47162 * 330.00033 * 26 24 22 30 30 C 1.53775 * 87.08329 * 334.56789 * 19 18 16 31 31 H 1.08998 * 109.46630 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47104 * 299.99900 * 1 2 3 33 33 H 1.08999 * 109.46924 * 59.99926 * 1 2 3 34 34 H 1.09000 * 109.47362 * 240.00838 * 2 1 3 35 35 H 1.08996 * 109.47602 * 120.00344 * 2 1 3 36 36 H 1.07998 * 120.02899 * 0.02578 * 7 6 5 37 37 H 1.07999 * 119.96978 * 180.02562 * 8 7 6 38 38 H 1.07997 * 119.94260 * 180.02562 * 9 8 7 39 39 H 1.07998 * 119.97004 * 180.02562 * 10 9 8 40 40 H 1.09004 * 109.47395 * 270.23836 * 12 11 10 41 41 H 1.08994 * 109.47201 * 30.23682 * 12 11 10 42 42 H 1.09001 * 109.47018 * 150.24084 * 12 11 10 43 43 H 0.97005 * 120.00116 * 359.97438 * 15 13 3 44 44 H 1.08999 * 113.61450 * 254.52970 * 18 16 15 45 45 H 1.08997 * 113.61673 * 25.43910 * 18 16 15 46 46 H 0.97002 * 119.99949 * 335.00451 * 21 19 18 47 47 H 0.96996 * 120.00335 * 180.02562 * 25 24 22 48 48 H 1.09002 * 113.61712 * 270.88654 * 30 19 18 49 49 H 1.09004 * 113.61750 * 139.97964 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 0.5058 2.7956 -1.2114 7 6 -0.2248 2.9195 -0.0383 8 6 -1.3998 3.6455 -0.0312 9 6 -1.8480 4.2491 -1.1919 10 6 -1.1220 4.1272 -2.3620 11 6 0.0564 3.4057 -2.3732 12 6 0.8503 3.2780 -3.6478 13 6 3.5419 1.4444 0.1238 14 8 4.2250 1.8612 -0.7875 15 7 4.1260 0.9828 1.2473 16 6 5.5861 0.9841 1.3675 17 1 6.0633 1.7207 0.7210 18 6 6.0844 1.0259 2.8217 19 6 7.1703 0.0238 2.3955 20 1 7.3639 -0.7517 3.1366 21 7 8.3952 0.6596 1.9039 22 6 9.5884 -0.0088 1.9725 23 1 9.6265 -1.0048 2.3885 24 6 10.7492 0.5938 1.5072 25 7 11.8962 -0.0484 1.5735 26 14 10.6836 2.3166 0.7883 27 1 10.8959 3.3125 1.8692 28 1 11.7467 2.4657 -0.2378 29 1 9.3561 2.5414 0.1619 30 6 6.2130 -0.4171 1.2757 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 0.1250 2.4486 0.8685 37 1 -1.9686 3.7425 0.8817 38 1 -2.7668 4.8167 -1.1842 39 1 -1.4739 4.5999 -3.2670 40 1 0.5154 2.3986 -4.1979 41 1 0.7011 4.1677 -4.2595 42 1 1.9086 3.1753 -3.4079 43 1 3.5797 0.6498 1.9764 44 1 6.4794 1.9970 3.1202 45 1 5.3721 0.6188 3.5393 46 1 8.3610 1.5540 1.5300 47 1 12.7073 0.3728 1.2487 48 1 5.5357 -1.2186 1.5705 49 1 6.7117 -0.6109 0.3260 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566805136.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:36 Heat of formation + Delta-G solvation = -35.743805 kcal Electronic energy + Delta-G solvation = -28418.285216 eV Core-core repulsion = 24538.851999 eV Total energy + Delta-G solvation = -3879.433218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93723 -40.89069 -39.57367 -38.29665 -35.90176 -35.09565 -34.11044 -33.37759 -32.29801 -31.15542 -28.84790 -27.62248 -26.55044 -26.11406 -24.38227 -24.03245 -22.75377 -22.52148 -21.29076 -20.55800 -19.64246 -19.31124 -18.39370 -17.54479 -16.95549 -16.81473 -16.59066 -16.36517 -16.13837 -15.80315 -15.61875 -15.16170 -14.80268 -14.75684 -14.70422 -14.49186 -14.03434 -13.85092 -13.76538 -13.60995 -13.35274 -13.30820 -13.20956 -13.01161 -12.92058 -12.82481 -12.52339 -12.32379 -12.25827 -12.10482 -11.94040 -11.87015 -11.80283 -11.46610 -11.36966 -10.97346 -10.77747 -10.07932 -9.73313 -9.33861 -9.04454 -8.06348 -5.39321 0.38814 0.49384 1.34040 1.36812 1.41890 1.42649 1.59095 2.43588 2.54864 2.82387 3.23674 3.46307 3.46898 3.57678 3.67433 3.69317 3.82192 3.87512 3.95906 4.15506 4.21321 4.23357 4.24011 4.38603 4.41911 4.47195 4.65082 4.72512 4.74295 4.74700 4.75640 4.82753 4.96786 4.97444 4.99602 5.07580 5.08330 5.18110 5.25465 5.28925 5.31328 5.41494 5.53262 5.56349 5.62120 5.76921 5.87416 6.19459 6.35529 6.53650 7.03896 7.16551 7.81378 7.96823 9.14833 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.019513 B = 0.002370 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.605893 B =11809.724068 C =12526.178018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.133 4.133 3 C 0.069 3.931 4 H 0.130 0.870 5 O -0.309 6.309 6 C 0.108 3.892 7 C -0.211 4.211 8 C -0.087 4.087 9 C -0.158 4.158 10 C -0.089 4.089 11 C -0.142 4.142 12 C -0.105 4.105 13 C 0.506 3.494 14 O -0.577 6.577 15 N -0.690 5.690 16 C 0.126 3.874 17 H 0.073 0.927 18 C -0.135 4.135 19 C 0.152 3.848 20 H 0.080 0.920 21 N -0.739 5.739 22 C -0.229 4.229 23 H 0.066 0.934 24 C -0.061 4.061 25 N -0.980 5.980 26 Si 0.947 3.053 27 H -0.272 1.272 28 H -0.296 1.296 29 H -0.265 1.265 30 C -0.172 4.172 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.059 0.941 35 H 0.112 0.888 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.045 0.955 43 H 0.422 0.578 44 H 0.070 0.930 45 H 0.133 0.867 46 H 0.363 0.637 47 H 0.258 0.742 48 H 0.111 0.889 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.529 5.513 0.125 36.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C 0.010 3.990 4 H 0.147 0.853 5 O -0.222 6.222 6 C 0.063 3.937 7 C -0.229 4.229 8 C -0.105 4.105 9 C -0.176 4.176 10 C -0.107 4.107 11 C -0.142 4.142 12 C -0.162 4.162 13 C 0.292 3.708 14 O -0.456 6.456 15 N -0.344 5.344 16 C 0.021 3.979 17 H 0.091 0.909 18 C -0.174 4.174 19 C 0.042 3.958 20 H 0.098 0.902 21 N -0.380 5.380 22 C -0.360 4.360 23 H 0.084 0.916 24 C -0.252 4.252 25 N -0.630 5.630 26 Si 0.775 3.225 27 H -0.198 1.198 28 H -0.223 1.223 29 H -0.190 1.190 30 C -0.214 4.214 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.130 0.870 36 H 0.167 0.833 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.163 0.837 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.261 0.739 44 H 0.089 0.911 45 H 0.151 0.849 46 H 0.196 0.804 47 H 0.067 0.933 48 H 0.129 0.871 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -35.736 5.614 -0.627 36.180 hybrid contribution 0.844 0.689 -0.581 1.235 sum -34.892 6.303 -1.209 35.477 Atomic orbital electron populations 1.21906 0.93139 1.03245 1.02452 1.22017 0.98318 0.92204 1.04573 1.22510 0.90621 0.97003 0.88886 0.85269 1.86197 1.38138 1.63319 1.34528 1.19153 0.86147 0.93271 0.95153 1.21515 0.98357 1.05736 0.97264 1.21290 0.94911 0.94872 0.99401 1.21410 1.01570 1.02028 0.92606 1.21164 0.92678 0.97091 0.99732 1.19548 0.98207 1.02095 0.94384 1.20585 0.98632 1.02728 0.94228 1.20941 0.90492 0.76867 0.82485 1.90746 1.66318 1.47796 1.40727 1.45709 1.07112 1.63615 1.17938 1.22335 0.79196 0.97872 0.98488 0.90900 1.23769 0.98086 1.00648 0.94884 1.21221 0.84229 0.95570 0.94824 0.90160 1.42591 1.04111 1.17099 1.74172 1.19097 0.85142 0.99111 1.32632 0.91596 1.25416 0.95148 1.02102 1.02581 1.69854 0.99014 1.39587 1.54575 0.85535 0.77310 0.81313 0.78372 1.19827 1.22305 1.19021 1.24191 0.99533 0.97235 1.00394 0.90818 0.90249 0.93885 0.92182 0.86976 0.83342 0.83067 0.83523 0.83720 0.91165 0.90215 0.93636 0.73948 0.91112 0.84906 0.80429 0.93309 0.87104 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.45 71.98 0.61 -1.01 16 2 C -0.13 -1.83 5.61 30.60 0.17 -1.66 16 3 C 0.07 1.31 2.57 29.85 0.08 1.39 16 4 H 0.13 1.61 5.37 -2.39 -0.01 1.59 16 5 O -0.31 -7.88 8.25 -73.39 -0.61 -8.48 16 6 C 0.11 2.28 5.30 22.51 0.12 2.40 16 7 C -0.21 -3.12 7.16 22.37 0.16 -2.96 16 8 C -0.09 -1.02 10.04 22.26 0.22 -0.80 16 9 C -0.16 -1.93 10.04 22.28 0.22 -1.70 16 10 C -0.09 -1.35 9.70 22.25 0.22 -1.13 16 11 C -0.14 -2.90 5.89 -19.77 -0.12 -3.02 16 12 C -0.11 -2.17 9.79 71.24 0.70 -1.47 16 13 C 0.51 13.56 7.18 87.66 0.63 14.19 16 14 O -0.58 -22.85 16.11 15.95 0.26 -22.60 16 15 N -0.69 -14.29 5.25 -440.04 -2.31 -16.60 16 16 C 0.13 3.60 4.12 45.52 0.19 3.79 16 17 H 0.07 2.71 7.46 -2.38 -0.02 2.70 16 18 C -0.13 -3.32 7.58 31.12 0.24 -3.08 16 19 C 0.15 5.28 4.56 45.51 0.21 5.48 16 20 H 0.08 2.76 8.10 -2.39 -0.02 2.74 16 21 N -0.74 -34.44 5.11 -320.44 -1.64 -36.08 16 22 C -0.23 -13.04 10.45 84.03 0.88 -12.16 16 23 H 0.07 4.04 8.06 -2.91 -0.02 4.01 16 24 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 25 N -0.98 -63.42 13.97 21.65 0.30 -63.11 16 26 Si 0.95 47.33 27.74 68.60 1.90 49.23 16 27 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 28 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 29 H -0.26 -12.60 6.52 99.48 0.65 -11.96 16 30 C -0.17 -5.35 7.68 31.12 0.24 -5.11 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.08 0.53 6.80 -2.39 -0.02 0.51 16 33 H 0.04 0.65 6.27 -2.39 -0.01 0.63 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 0.90 7.77 -2.39 -0.02 0.88 16 36 H 0.15 1.47 4.54 -2.91 -0.01 1.46 16 37 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 38 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.08 1.30 8.09 -2.39 -0.02 1.28 16 42 H 0.04 1.19 7.53 -2.39 -0.02 1.18 16 43 H 0.42 4.58 8.43 -92.70 -0.78 3.80 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.13 2.04 8.12 -2.39 -0.02 2.02 16 46 H 0.36 16.84 5.76 -92.71 -0.53 16.31 16 47 H 0.26 15.96 8.31 -92.71 -0.77 15.18 16 48 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 49 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -82.47 392.43 2.73 -79.74 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: -0.40 Total: 27.92 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 5.22 Total: -10.03 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -3.65 Total: -115.79 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.35 Total: -31.08 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 1.90 Total: 49.23 kcal Total: -82.47 2.73 -79.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566805136.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.001 kcal (2) G-P(sol) polarization free energy of solvation -82.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds