Wall clock time and date at job start Tue Mar 31 2020 16:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47022 * 2 1 4 4 H 1.09000 * 109.46694 * 305.00250 * 3 2 1 5 5 O 1.42902 * 109.46919 * 64.99952 * 3 2 1 6 6 C 1.35896 * 116.99764 * 265.86185 * 5 3 2 7 7 C 1.38750 * 120.05951 * 357.70545 * 6 5 3 8 8 C 1.38127 * 119.94427 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.05276 * 359.97438 * 8 7 6 10 10 C 1.38246 * 120.11442 * 359.75774 * 9 8 7 11 11 C 1.38163 * 120.05171 * 0.49902 * 10 9 8 12 12 C 1.50708 * 120.02460 * 179.77370 * 11 10 9 13 13 C 1.50696 * 109.47161 * 185.00187 * 3 2 1 14 14 O 1.21281 * 119.99906 * 244.99820 * 13 3 2 15 15 N 1.34783 * 120.00156 * 65.00207 * 13 3 2 16 16 C 1.46500 * 119.99846 * 180.02562 * 15 13 3 17 17 H 1.09000 * 112.84703 * 336.18929 * 16 15 13 18 18 C 1.53776 * 113.61578 * 107.50196 * 16 15 13 19 19 C 1.53775 * 87.08349 * 89.11267 * 18 16 15 20 20 H 1.09003 * 113.69332 * 270.87569 * 19 18 16 21 21 N 1.46501 * 113.61824 * 139.97818 * 19 18 16 22 22 C 1.36937 * 120.00100 * 107.50012 * 21 19 18 23 23 H 1.08009 * 120.00067 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00425 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99503 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00193 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47275 * 59.99854 * 26 24 22 28 28 H 1.48500 * 109.47091 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47103 * 299.99926 * 26 24 22 30 30 C 1.53777 * 113.61085 * 205.00037 * 16 15 13 31 31 H 1.09003 * 109.46613 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47253 * 299.99683 * 1 2 3 33 33 H 1.09001 * 109.47097 * 60.00267 * 1 2 3 34 34 H 1.08998 * 109.47253 * 240.00317 * 2 1 3 35 35 H 1.09001 * 109.47499 * 120.00092 * 2 1 3 36 36 H 1.07995 * 120.02949 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.96782 * 180.02562 * 8 7 6 38 38 H 1.07999 * 119.93772 * 179.97438 * 9 8 7 39 39 H 1.08001 * 119.96891 * 180.25509 * 10 9 8 40 40 H 1.08995 * 109.47040 * 269.72503 * 12 11 10 41 41 H 1.09003 * 109.46787 * 29.72807 * 12 11 10 42 42 H 1.09002 * 109.47032 * 149.72230 * 12 11 10 43 43 H 0.96996 * 119.99628 * 359.97438 * 15 13 3 44 44 H 1.09003 * 113.61172 * 203.66260 * 18 16 15 45 45 H 1.08996 * 113.61639 * 334.56235 * 18 16 15 46 46 H 0.96994 * 120.00385 * 287.50812 * 21 19 18 47 47 H 0.97006 * 119.99266 * 180.02562 * 25 24 22 48 48 H 1.09004 * 113.61722 * 25.42661 * 30 16 15 49 49 H 1.08996 * 113.61859 * 156.33557 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 0.5058 2.7956 1.2114 7 6 -0.2249 2.9194 0.0384 8 6 -1.3999 3.6455 0.0314 9 6 -1.8485 4.2482 1.1923 10 6 -1.1252 4.1217 2.3637 11 6 0.0535 3.4010 2.3746 12 6 0.8441 3.2677 3.6507 13 6 3.5418 1.4444 -0.1239 14 8 4.2249 1.8612 0.7875 15 7 4.1260 0.9829 -1.2475 16 6 5.5860 0.9842 -1.3676 17 1 6.0632 1.7208 -0.7212 18 6 6.2129 -0.4169 -1.2759 19 6 6.0343 -0.5108 -2.8003 20 1 5.0709 -0.9205 -3.1040 21 7 7.1635 -1.1443 -3.4857 22 6 7.0319 -2.4071 -3.9989 23 1 6.0954 -2.9359 -3.8986 24 6 8.1019 -3.0076 -4.6478 25 7 9.2430 -2.3631 -4.7704 26 14 7.9221 -4.7299 -5.3484 27 1 6.8361 -4.7415 -6.3611 28 1 9.1984 -5.1401 -5.9872 29 1 7.5888 -5.6770 -4.2543 30 6 6.0843 1.0261 -2.8218 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.1244 2.4479 -0.8682 37 1 -1.9691 3.7417 -0.8814 38 1 -2.7673 4.8158 1.1847 39 1 -1.4799 4.5900 3.2700 40 1 1.5615 4.0853 3.7207 41 1 0.1663 3.3050 4.5036 42 1 1.3762 2.3164 3.6508 43 1 3.5796 0.6493 -1.9762 44 1 7.2556 -0.4088 -0.9581 45 1 5.6057 -1.1315 -0.7203 46 1 8.0044 -0.6695 -3.5760 47 1 9.9906 -2.7826 -5.2242 48 1 5.3732 1.4765 -3.5143 49 1 7.0918 1.4287 -2.9268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566805137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:40 Heat of formation + Delta-G solvation = -17.487468 kcal Electronic energy + Delta-G solvation = -28299.014931 eV Core-core repulsion = 24420.373368 eV Total energy + Delta-G solvation = -3878.641564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09750 -39.84349 -38.32599 -37.32490 -34.46157 -33.90584 -32.86078 -32.38608 -30.52019 -29.94050 -27.91518 -26.89464 -25.17296 -24.57004 -23.44044 -22.60398 -21.88308 -21.81986 -20.41778 -19.08039 -18.51627 -17.60713 -17.06916 -16.27091 -16.20453 -15.88737 -15.55346 -15.06374 -14.78975 -14.70891 -14.32855 -14.15367 -13.89337 -13.66171 -13.54972 -13.40422 -12.97658 -12.71068 -12.57470 -12.50138 -12.36064 -12.17500 -12.07366 -11.90078 -11.70137 -11.66222 -11.46888 -11.24929 -10.92305 -10.82839 -10.76206 -10.37172 -10.28186 -9.96279 -9.75769 -9.60278 -9.09896 -8.95827 -8.85706 -8.34206 -7.02125 -5.83047 -3.12374 1.02071 1.15384 2.43023 2.49485 3.39695 3.39759 3.44468 3.45556 3.48195 4.25894 4.37390 4.45403 4.51269 4.54537 4.60717 4.79857 4.81520 4.96760 5.00438 5.05474 5.11404 5.16409 5.27706 5.34748 5.39990 5.40205 5.45664 5.53421 5.58861 5.60325 5.71439 5.82380 5.86392 5.89413 5.99780 6.04440 6.07749 6.17978 6.20748 6.24855 6.27820 6.41759 6.49528 6.58051 6.64125 7.01631 7.10858 7.47172 7.63127 8.15238 8.35192 9.46392 10.03470 10.37732 11.39066 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023741 B = 0.002122 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.095293 B =13191.136481 C =13637.938588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.140 4.140 3 C 0.065 3.935 4 H 0.102 0.898 5 O -0.278 6.278 6 C 0.133 3.867 7 C -0.209 4.209 8 C -0.086 4.086 9 C -0.157 4.157 10 C -0.084 4.084 11 C -0.116 4.116 12 C -0.107 4.107 13 C 0.516 3.484 14 O -0.519 6.519 15 N -0.702 5.702 16 C 0.116 3.884 17 H 0.097 0.903 18 C -0.176 4.176 19 C 0.167 3.833 20 H 0.073 0.927 21 N -0.712 5.712 22 C -0.247 4.247 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.908 3.092 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.285 1.285 30 C -0.159 4.159 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.400 0.600 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.386 0.614 47 H 0.257 0.743 48 H 0.064 0.936 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.383 12.578 11.382 28.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.178 4.178 3 C 0.005 3.995 4 H 0.119 0.881 5 O -0.190 6.190 6 C 0.087 3.913 7 C -0.227 4.227 8 C -0.104 4.104 9 C -0.175 4.175 10 C -0.102 4.102 11 C -0.116 4.116 12 C -0.163 4.163 13 C 0.300 3.700 14 O -0.393 6.393 15 N -0.354 5.354 16 C 0.011 3.989 17 H 0.115 0.885 18 C -0.218 4.218 19 C 0.055 3.945 20 H 0.091 0.909 21 N -0.350 5.350 22 C -0.378 4.378 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.739 3.261 27 H -0.212 1.212 28 H -0.216 1.216 29 H -0.212 1.212 30 C -0.199 4.199 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.101 0.899 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.235 0.765 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.220 0.780 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.744 12.653 12.118 28.709 hybrid contribution -0.098 -1.009 -1.079 1.481 sum -22.841 11.644 11.039 27.914 Atomic orbital electron populations 1.21943 0.94386 1.02632 1.02348 1.22015 0.97392 0.93810 1.04568 1.22388 0.93352 0.95421 0.88377 0.88087 1.86218 1.36916 1.62546 1.33296 1.18872 0.86173 0.92293 0.93922 1.21321 0.98208 1.05571 0.97626 1.20905 0.95274 0.95930 0.98282 1.21031 1.01005 1.02506 0.93002 1.20891 0.93521 0.97390 0.98423 1.19294 0.97115 1.00946 0.94266 1.20629 0.99222 1.03307 0.93191 1.20104 0.88934 0.78119 0.82880 1.90736 1.64673 1.45420 1.38493 1.45597 1.07767 1.64207 1.17819 1.21857 0.78608 0.99738 0.98691 0.88520 1.24314 1.00873 0.94700 1.01899 1.21618 0.92709 0.89968 0.90239 0.90866 1.42390 1.10938 1.16103 1.65526 1.19232 0.97579 0.91809 1.29161 0.91184 1.24779 0.95995 0.98690 1.01369 1.69653 1.02642 1.37697 1.47890 0.86259 0.76702 0.84318 0.78837 1.21231 1.21650 1.21209 1.23872 1.01711 1.00244 0.94053 0.91791 0.92047 0.92244 0.89453 0.89901 0.85073 0.85861 0.86018 0.85485 0.91242 0.91819 0.90888 0.76507 0.89478 0.92352 0.77980 0.93347 0.91720 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 8.45 37.16 0.31 -0.86 16 2 C -0.14 -1.22 5.61 -26.73 -0.15 -1.37 16 3 C 0.06 0.68 2.57 -27.88 -0.07 0.60 16 4 H 0.10 0.83 5.38 -51.93 -0.28 0.55 16 5 O -0.28 -3.45 8.25 -39.27 -0.32 -3.77 16 6 C 0.13 1.44 5.30 -39.22 -0.21 1.23 16 7 C -0.21 -1.85 7.16 -39.43 -0.28 -2.13 16 8 C -0.09 -0.67 10.04 -39.60 -0.40 -1.06 16 9 C -0.16 -1.19 10.04 -39.56 -0.40 -1.59 16 10 C -0.08 -0.69 9.70 -39.61 -0.38 -1.08 16 11 C -0.12 -1.17 5.89 -104.47 -0.62 -1.78 16 12 C -0.11 -0.99 9.79 36.01 0.35 -0.64 16 13 C 0.52 7.00 7.18 -10.98 -0.08 6.92 16 14 O -0.52 -9.34 16.11 -14.30 -0.23 -9.57 16 15 N -0.70 -8.57 5.16 -53.02 -0.27 -8.85 16 16 C 0.12 1.70 4.32 -67.12 -0.29 1.41 16 17 H 0.10 1.52 7.46 -51.93 -0.39 1.14 16 18 C -0.18 -3.01 7.68 -25.92 -0.20 -3.21 16 19 C 0.17 3.08 4.36 -67.12 -0.29 2.79 16 20 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 21 N -0.71 -17.20 5.40 -52.63 -0.28 -17.48 16 22 C -0.25 -6.66 9.97 -15.06 -0.15 -6.81 16 23 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 26 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 27 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 30 C -0.16 -2.42 7.58 -25.92 -0.20 -2.61 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.54 6.27 -51.93 -0.33 0.21 16 33 H 0.06 0.37 6.80 -51.93 -0.35 0.02 16 34 H 0.09 0.65 7.77 -51.93 -0.40 0.25 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.13 0.96 4.54 -52.49 -0.24 0.72 16 37 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 42 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 43 H 0.40 3.83 8.40 -40.82 -0.34 3.49 16 44 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.39 9.95 7.92 -40.82 -0.32 9.63 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 48 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.09 1.46 8.12 -51.93 -0.42 1.04 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -33.03 395.54 -10.25 -43.28 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -7.66 Total: 11.04 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.14 Total: -10.62 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: 0.17 Total: -53.25 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.55 Total: -13.34 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.03 -10.25 -43.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566805137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.794 kcal (2) G-P(sol) polarization free energy of solvation -33.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds