Wall clock time and date at job start Tue Mar 31 2020 16:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47022 * 2 1 4 4 H 1.09000 * 109.46694 * 305.00250 * 3 2 1 5 5 O 1.42902 * 109.46919 * 64.99952 * 3 2 1 6 6 C 1.35896 * 116.99764 * 265.86185 * 5 3 2 7 7 C 1.38750 * 120.05951 * 357.70545 * 6 5 3 8 8 C 1.38127 * 119.94427 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.05276 * 359.97438 * 8 7 6 10 10 C 1.38246 * 120.11442 * 359.75774 * 9 8 7 11 11 C 1.38163 * 120.05171 * 0.49902 * 10 9 8 12 12 C 1.50708 * 120.02460 * 179.77370 * 11 10 9 13 13 C 1.50696 * 109.47161 * 185.00187 * 3 2 1 14 14 O 1.21281 * 119.99906 * 244.99820 * 13 3 2 15 15 N 1.34783 * 120.00156 * 65.00207 * 13 3 2 16 16 C 1.46500 * 119.99846 * 180.02562 * 15 13 3 17 17 H 1.09000 * 112.84703 * 336.18929 * 16 15 13 18 18 C 1.53776 * 113.61578 * 107.50196 * 16 15 13 19 19 C 1.53775 * 87.08349 * 89.11267 * 18 16 15 20 20 H 1.09003 * 113.69332 * 270.87569 * 19 18 16 21 21 N 1.46501 * 113.61824 * 139.97818 * 19 18 16 22 22 C 1.36937 * 120.00100 * 107.50012 * 21 19 18 23 23 H 1.08009 * 120.00067 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00425 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99503 * 359.97438 * 24 22 21 26 26 Si 1.86795 * 120.00193 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47275 * 59.99854 * 26 24 22 28 28 H 1.48500 * 109.47091 * 179.97438 * 26 24 22 29 29 H 1.48497 * 109.47103 * 299.99926 * 26 24 22 30 30 C 1.53777 * 113.61085 * 205.00037 * 16 15 13 31 31 H 1.09003 * 109.46613 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47253 * 299.99683 * 1 2 3 33 33 H 1.09001 * 109.47097 * 60.00267 * 1 2 3 34 34 H 1.08998 * 109.47253 * 240.00317 * 2 1 3 35 35 H 1.09001 * 109.47499 * 120.00092 * 2 1 3 36 36 H 1.07995 * 120.02949 * 0.02562 * 7 6 5 37 37 H 1.08001 * 119.96782 * 180.02562 * 8 7 6 38 38 H 1.07999 * 119.93772 * 179.97438 * 9 8 7 39 39 H 1.08001 * 119.96891 * 180.25509 * 10 9 8 40 40 H 1.08995 * 109.47040 * 269.72503 * 12 11 10 41 41 H 1.09003 * 109.46787 * 29.72807 * 12 11 10 42 42 H 1.09002 * 109.47032 * 149.72230 * 12 11 10 43 43 H 0.96996 * 119.99628 * 359.97438 * 15 13 3 44 44 H 1.09003 * 113.61172 * 203.66260 * 18 16 15 45 45 H 1.08996 * 113.61639 * 334.56235 * 18 16 15 46 46 H 0.96994 * 120.00385 * 287.50812 * 21 19 18 47 47 H 0.97006 * 119.99266 * 180.02562 * 25 24 22 48 48 H 1.09004 * 113.61722 * 25.42661 * 30 16 15 49 49 H 1.08996 * 113.61859 * 156.33557 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 0.5058 2.7956 1.2114 7 6 -0.2249 2.9194 0.0384 8 6 -1.3999 3.6455 0.0314 9 6 -1.8485 4.2482 1.1923 10 6 -1.1252 4.1217 2.3637 11 6 0.0535 3.4010 2.3746 12 6 0.8441 3.2677 3.6507 13 6 3.5418 1.4444 -0.1239 14 8 4.2249 1.8612 0.7875 15 7 4.1260 0.9829 -1.2475 16 6 5.5860 0.9842 -1.3676 17 1 6.0632 1.7208 -0.7212 18 6 6.2129 -0.4169 -1.2759 19 6 6.0343 -0.5108 -2.8003 20 1 5.0709 -0.9205 -3.1040 21 7 7.1635 -1.1443 -3.4857 22 6 7.0319 -2.4071 -3.9989 23 1 6.0954 -2.9359 -3.8986 24 6 8.1019 -3.0076 -4.6478 25 7 9.2430 -2.3631 -4.7704 26 14 7.9221 -4.7299 -5.3484 27 1 6.8361 -4.7415 -6.3611 28 1 9.1984 -5.1401 -5.9872 29 1 7.5888 -5.6770 -4.2543 30 6 6.0843 1.0261 -2.8218 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.1244 2.4479 -0.8682 37 1 -1.9691 3.7417 -0.8814 38 1 -2.7673 4.8158 1.1847 39 1 -1.4799 4.5900 3.2700 40 1 1.5615 4.0853 3.7207 41 1 0.1663 3.3050 4.5036 42 1 1.3762 2.3164 3.6508 43 1 3.5796 0.6493 -1.9762 44 1 7.2556 -0.4088 -0.9581 45 1 5.6057 -1.1315 -0.7203 46 1 8.0044 -0.6695 -3.5760 47 1 9.9906 -2.7826 -5.2242 48 1 5.3732 1.4765 -3.5143 49 1 7.0918 1.4287 -2.9268 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566805137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:39 Heat of formation + Delta-G solvation = -37.095587 kcal Electronic energy + Delta-G solvation = -28299.865203 eV Core-core repulsion = 24420.373368 eV Total energy + Delta-G solvation = -3879.491835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.94672 -40.90606 -39.45303 -38.25768 -35.82508 -35.08516 -33.95430 -33.33172 -31.81034 -31.12904 -28.75092 -27.58637 -26.56897 -26.31455 -24.19151 -23.94044 -22.93535 -22.50619 -21.32601 -20.43777 -19.29430 -19.17385 -18.43446 -17.35209 -16.98533 -16.71014 -16.62710 -16.35173 -15.88876 -15.80938 -15.48853 -15.43840 -15.00153 -14.79155 -14.42016 -14.28186 -14.01738 -13.68565 -13.58119 -13.45273 -13.33607 -13.28339 -13.17381 -12.97846 -12.83998 -12.77038 -12.60028 -12.29908 -12.20906 -12.08971 -11.93204 -11.84824 -11.73880 -11.44594 -11.21607 -10.85768 -10.83155 -10.11093 -9.71818 -9.03239 -8.98396 -7.93777 -5.22271 0.40424 0.50847 1.40342 1.48663 1.51188 1.55188 1.57138 2.52933 2.57458 2.83665 3.37323 3.44513 3.58504 3.68555 3.69807 3.83625 3.89044 3.95929 3.97415 4.16736 4.24721 4.32276 4.33113 4.37445 4.43996 4.48118 4.66151 4.70283 4.72983 4.77259 4.78393 4.89682 4.90912 4.99136 5.00132 5.07011 5.12622 5.18694 5.22211 5.30391 5.31370 5.43150 5.51189 5.55229 5.63732 5.66749 5.88362 6.27904 6.34810 6.50886 7.11509 7.34308 8.11169 8.33083 9.29201 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023741 B = 0.002122 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.095293 B =13191.136481 C =13637.938588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.070 3.930 4 H 0.129 0.871 5 O -0.305 6.305 6 C 0.108 3.892 7 C -0.212 4.212 8 C -0.088 4.088 9 C -0.158 4.158 10 C -0.088 4.088 11 C -0.140 4.140 12 C -0.104 4.104 13 C 0.514 3.486 14 O -0.569 6.569 15 N -0.688 5.688 16 C 0.133 3.867 17 H 0.087 0.913 18 C -0.173 4.173 19 C 0.155 3.845 20 H 0.088 0.912 21 N -0.727 5.727 22 C -0.243 4.243 23 H 0.080 0.920 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.972 3.028 27 H -0.275 1.275 28 H -0.299 1.299 29 H -0.280 1.280 30 C -0.141 4.141 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.147 0.853 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.417 0.583 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.374 0.626 47 H 0.250 0.750 48 H 0.090 0.910 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.764 12.978 10.428 31.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.011 3.989 4 H 0.146 0.854 5 O -0.218 6.218 6 C 0.063 3.937 7 C -0.230 4.230 8 C -0.106 4.106 9 C -0.176 4.176 10 C -0.106 4.106 11 C -0.141 4.141 12 C -0.160 4.160 13 C 0.300 3.700 14 O -0.447 6.447 15 N -0.341 5.341 16 C 0.027 3.973 17 H 0.105 0.895 18 C -0.215 4.215 19 C 0.045 3.955 20 H 0.106 0.894 21 N -0.364 5.364 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.801 3.199 27 H -0.200 1.200 28 H -0.226 1.226 29 H -0.206 1.206 30 C -0.181 4.181 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.164 0.836 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.070 0.930 43 H 0.255 0.745 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.206 0.794 47 H 0.059 0.941 48 H 0.109 0.891 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -26.209 13.057 11.165 31.338 hybrid contribution 0.855 -1.054 -0.696 1.526 sum -25.354 12.003 10.469 29.942 Atomic orbital electron populations 1.21900 0.93118 1.03188 1.02503 1.22021 0.98403 0.92507 1.04440 1.22438 0.90757 0.96744 0.88998 0.85399 1.86182 1.38082 1.63280 1.34252 1.19136 0.86253 0.93180 0.95090 1.21512 0.98423 1.05724 0.97355 1.21276 0.94895 0.95015 0.99409 1.21404 1.01580 1.02014 0.92595 1.21171 0.92804 0.96877 0.99744 1.19554 0.98160 1.02020 0.94328 1.20584 0.99386 1.01829 0.94241 1.20749 0.90330 0.76774 0.82104 1.90716 1.66083 1.47667 1.40248 1.45431 1.06775 1.63668 1.18179 1.21524 0.79990 0.97645 0.98118 0.89481 1.24166 1.00174 0.96454 1.00737 1.21973 0.91557 0.91862 0.90123 0.89414 1.42600 1.12020 1.15661 1.66160 1.19674 0.97556 0.92769 1.27471 0.90203 1.25586 0.96016 1.02498 1.02948 1.69815 1.03352 1.39249 1.49636 0.85232 0.76340 0.80067 0.78247 1.20043 1.22569 1.20628 1.23678 1.02216 0.97475 0.94721 0.91022 0.93501 0.90425 0.87708 0.91865 0.83623 0.83308 0.83567 0.83578 0.91921 0.89849 0.92994 0.74486 0.91329 0.92449 0.79433 0.94121 0.89129 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 8.45 71.98 0.61 -1.32 16 2 C -0.14 -2.16 5.61 30.60 0.17 -1.99 16 3 C 0.07 1.38 2.57 29.85 0.08 1.46 16 4 H 0.13 1.76 5.38 -2.39 -0.01 1.75 16 5 O -0.30 -7.61 8.25 -73.39 -0.61 -8.22 16 6 C 0.11 2.26 5.30 22.51 0.12 2.38 16 7 C -0.21 -3.27 7.16 22.37 0.16 -3.11 16 8 C -0.09 -1.09 10.04 22.26 0.22 -0.87 16 9 C -0.16 -1.94 10.04 22.28 0.22 -1.72 16 10 C -0.09 -1.30 9.70 22.25 0.22 -1.08 16 11 C -0.14 -2.77 5.89 -19.77 -0.12 -2.88 16 12 C -0.10 -1.99 9.79 71.24 0.70 -1.29 16 13 C 0.51 13.62 7.18 87.65 0.63 14.25 16 14 O -0.57 -20.92 16.11 15.96 0.26 -20.66 16 15 N -0.69 -15.56 5.16 -440.05 -2.27 -17.84 16 16 C 0.13 3.78 4.32 45.51 0.20 3.98 16 17 H 0.09 2.73 7.46 -2.39 -0.02 2.72 16 18 C -0.17 -5.88 7.68 31.12 0.24 -5.65 16 19 C 0.15 5.52 4.36 45.52 0.20 5.72 16 20 H 0.09 2.88 8.10 -2.39 -0.02 2.86 16 21 N -0.73 -35.07 5.40 -320.44 -1.73 -36.80 16 22 C -0.24 -12.98 9.97 84.03 0.84 -12.14 16 23 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 24 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 25 N -0.97 -58.64 13.06 21.65 0.28 -58.36 16 26 Si 0.97 45.15 29.55 68.60 2.03 47.17 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 29 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 30 C -0.14 -4.07 7.58 31.12 0.24 -3.83 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.76 6.27 -2.39 -0.01 0.75 16 33 H 0.08 0.71 6.80 -2.39 -0.02 0.70 16 34 H 0.10 1.27 7.77 -2.39 -0.02 1.25 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.15 1.65 4.54 -2.91 -0.01 1.64 16 37 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 38 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.15 1.46 8.06 -2.91 -0.02 1.43 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 42 H 0.05 1.18 7.53 -2.39 -0.02 1.17 16 43 H 0.42 6.68 8.40 -92.71 -0.78 5.90 16 44 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.37 19.60 7.92 -92.71 -0.73 18.87 16 47 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 48 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 49 H 0.09 2.65 8.12 -2.39 -0.02 2.64 16 Total: -1.00 -73.40 395.54 2.60 -70.80 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: -0.54 Total: 35.95 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 5.18 Total: -12.05 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -3.72 Total: -112.99 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.35 Total: -28.88 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -73.40 2.60 -70.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566805137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.703 kcal (2) G-P(sol) polarization free energy of solvation -73.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds