Wall clock time and date at job start Tue Mar 31 2020 16:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 N 1.46497 * 109.47388 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00553 * 97.41150 * 4 3 2 6 6 O 1.21548 * 119.99377 * 44.62677 * 5 4 3 7 7 C 1.47856 * 120.00296 * 224.63470 * 5 4 3 8 8 C 1.39603 * 120.11420 * 325.30173 * 7 5 4 9 9 C 1.37970 * 119.96213 * 179.68408 * 8 7 5 10 10 C 1.38284 * 120.20835 * 0.57241 * 9 8 7 11 11 C 1.38811 * 120.23582 * 359.44958 * 10 9 8 12 12 O 1.35910 * 119.98556 * 180.27860 * 11 10 9 13 13 C 1.42902 * 117.00104 * 359.97438 * 12 11 10 14 14 C 1.38497 * 120.03272 * 0.24957 * 11 10 9 15 15 C 1.46504 * 119.99893 * 277.41681 * 4 3 2 16 16 H 1.09007 * 110.63848 * 334.90783 * 15 4 3 17 17 C 1.55150 * 110.72387 * 98.05060 * 15 4 3 18 18 C 1.55121 * 101.48644 * 153.73337 * 17 15 4 19 19 N 1.47425 * 104.94308 * 323.22493 * 18 17 15 20 20 C 1.36933 * 125.64636 * 203.96475 * 19 18 17 21 21 H 1.07998 * 120.00225 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00167 * 0.04195 * 20 19 18 23 23 N 1.31620 * 120.00256 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47135 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46725 * 120.00255 * 24 22 20 27 27 H 1.48497 * 109.47202 * 240.00333 * 24 22 20 28 28 C 1.47016 * 108.70319 * 24.00432 * 19 18 17 29 29 H 1.08997 * 109.46609 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47159 * 300.00266 * 1 2 3 31 31 H 1.09001 * 109.46851 * 60.00557 * 1 2 3 32 32 H 1.08994 * 109.47521 * 239.99452 * 2 1 3 33 33 H 1.09001 * 109.46851 * 119.99443 * 2 1 3 34 34 H 1.08999 * 109.47376 * 59.99866 * 3 2 1 35 35 H 1.09002 * 109.46903 * 299.99994 * 3 2 1 36 36 H 1.08003 * 120.02140 * 359.97438 * 8 7 5 37 37 H 1.08003 * 119.89504 * 180.29492 * 9 8 7 38 38 H 1.07999 * 119.88340 * 179.71964 * 10 9 8 39 39 H 1.09005 * 109.46938 * 60.00331 * 13 12 11 40 40 H 1.08990 * 109.47299 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.47127 * 300.00348 * 13 12 11 42 42 H 1.08003 * 120.10483 * 180.02562 * 14 11 10 43 43 H 1.08997 * 111.00664 * 271.94351 * 17 15 4 44 44 H 1.09001 * 111.00693 * 35.79238 * 17 15 4 45 45 H 1.08999 * 110.42227 * 204.29258 * 18 17 15 46 46 H 1.09004 * 110.30158 * 82.09331 * 18 17 15 47 47 H 0.96994 * 120.00064 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.87917 * 239.52269 * 28 19 18 49 49 H 1.09001 * 109.88507 * 118.35800 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1785 1.5934 -1.1583 6 8 3.8331 2.4430 -1.9559 7 6 5.3372 0.7252 -1.4580 8 6 6.1808 0.3030 -0.4289 9 6 7.2573 -0.5124 -0.7113 10 6 7.5111 -0.9040 -2.0130 11 6 6.6781 -0.4887 -3.0428 12 8 6.9290 -0.8812 -4.3196 13 6 8.0668 -1.7200 -4.5288 14 6 5.5910 0.3248 -2.7698 15 6 4.2380 1.2787 1.2572 16 1 3.6303 1.6049 2.1014 17 6 4.6887 -0.1944 1.4421 18 6 5.9346 -0.0246 2.3504 19 7 6.5831 1.2126 1.8789 20 6 7.9063 1.5290 2.0339 21 1 8.2862 2.4648 1.6513 22 6 8.7595 0.6469 2.6826 23 7 8.2969 -0.4940 3.1482 24 14 10.5648 1.0783 2.8935 25 1 10.8305 2.4069 2.2857 26 1 10.8978 1.1207 4.3401 27 1 11.4010 0.0506 2.2229 28 6 5.5737 2.0506 1.2154 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 5.9881 0.6106 0.5883 37 1 7.9065 -0.8423 0.0864 38 1 8.3579 -1.5386 -2.2287 39 1 7.9496 -2.6406 -3.9571 40 1 8.1524 -1.9586 -5.5888 41 1 8.9667 -1.2002 -4.1999 42 1 4.9419 0.6482 -3.5701 43 1 3.9157 -0.7800 1.9397 44 1 4.9615 -0.6424 0.4865 45 1 6.6081 -0.8738 2.2349 46 1 5.6316 0.0793 3.3924 47 1 8.8930 -1.1101 3.6018 48 1 5.8646 2.2322 0.1807 49 1 5.4714 2.9975 1.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567689076.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:27 Heat of formation + Delta-G solvation = 84.049423 kcal Electronic energy + Delta-G solvation = -30914.307474 eV Core-core repulsion = 27040.068880 eV Total energy + Delta-G solvation = -3874.238594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.44926 -39.29049 -38.29483 -36.51391 -35.48559 -33.36579 -31.93712 -30.66714 -29.68054 -29.42343 -27.68948 -26.99444 -25.94387 -24.79681 -23.15639 -22.11667 -21.31047 -20.93831 -20.37768 -18.78223 -17.56466 -17.51918 -16.73855 -16.18750 -15.76048 -15.49359 -15.22387 -15.05874 -14.87932 -14.44282 -13.83911 -13.73972 -13.64337 -13.30663 -13.10944 -12.89844 -12.70246 -12.39658 -12.13996 -12.06095 -12.03035 -11.85862 -11.77889 -11.44973 -11.23099 -11.08071 -10.97899 -10.80291 -10.68592 -10.54772 -10.29839 -10.22992 -10.16511 -9.87879 -9.59563 -9.37999 -8.84099 -8.50015 -8.12782 -7.49428 -7.05228 -5.89728 -3.35474 1.37919 2.07712 2.85845 3.20257 3.28047 3.36139 3.37770 3.61477 4.28446 4.37179 4.80680 4.98962 5.05072 5.09371 5.14540 5.19169 5.25254 5.28336 5.30668 5.34320 5.41881 5.47763 5.51179 5.55779 5.59608 5.70563 5.78038 5.86974 5.97647 6.04801 6.08132 6.11215 6.18230 6.25129 6.26250 6.41644 6.45741 6.53015 6.55926 6.82025 7.01892 7.14724 7.21689 7.25384 7.40287 7.50052 7.61341 7.67125 7.82149 8.04846 8.31328 8.94258 9.52070 10.08787 11.12379 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008826 B = 0.005845 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.528404 B = 4789.533399 C = 7025.308337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.127 3.873 4 N -0.641 5.641 5 C 0.597 3.403 6 O -0.520 6.520 7 C -0.140 4.140 8 C -0.166 4.166 9 C -0.080 4.080 10 C -0.186 4.186 11 C 0.087 3.913 12 O -0.324 6.324 13 C 0.031 3.969 14 C -0.106 4.106 15 C 0.136 3.864 16 H 0.097 0.903 17 C -0.189 4.189 18 C 0.137 3.863 19 N -0.577 5.577 20 C -0.236 4.236 21 H 0.083 0.917 22 C 0.003 3.997 23 N -0.915 5.915 24 Si 0.914 3.086 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.288 1.288 28 C 0.098 3.902 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.247 0.753 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.052 0.948 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.124 0.876 43 H 0.065 0.935 44 H 0.097 0.903 45 H 0.120 0.880 46 H 0.024 0.976 47 H 0.256 0.744 48 H 0.049 0.951 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.489 -3.462 -6.260 11.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C 0.004 3.996 4 N -0.377 5.377 5 C 0.388 3.612 6 O -0.395 6.395 7 C -0.143 4.143 8 C -0.183 4.183 9 C -0.098 4.098 10 C -0.205 4.205 11 C 0.043 3.957 12 O -0.239 6.239 13 C -0.065 4.065 14 C -0.126 4.126 15 C 0.032 3.968 16 H 0.115 0.885 17 C -0.228 4.228 18 C 0.013 3.987 19 N -0.303 5.303 20 C -0.363 4.363 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.562 5.562 24 Si 0.743 3.257 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.215 1.215 28 C -0.027 4.027 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.259 0.741 37 H 0.156 0.844 38 H 0.137 0.863 39 H 0.070 0.930 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.142 0.858 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.137 0.863 46 H 0.042 0.958 47 H 0.067 0.933 48 H 0.067 0.933 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.578 -2.992 -6.755 11.321 hybrid contribution 1.302 -0.059 0.152 1.312 sum -7.275 -3.051 -6.603 10.288 Atomic orbital electron populations 1.21694 0.95447 1.01720 1.01744 1.22021 0.95682 0.97656 1.02961 1.21407 0.78891 0.96323 1.02976 1.47338 1.05735 1.78406 1.06186 1.18270 0.81682 0.80889 0.80322 1.90685 1.67760 1.30945 1.50116 1.20059 0.98334 1.02134 0.93818 1.26235 0.91895 0.92729 1.07436 1.21180 0.97324 0.96179 0.95090 1.21526 1.00659 1.04207 0.94114 1.18658 0.96029 0.97886 0.83116 1.86004 1.47067 1.65663 1.25155 1.22949 0.87652 0.93557 1.02331 1.20200 0.97163 0.99333 0.95856 1.22212 0.92928 0.96605 0.85057 0.88539 1.24331 0.99943 0.95629 1.02938 1.22301 0.90850 0.92073 0.93476 1.44889 1.04997 1.16980 1.63453 1.19115 0.81768 1.03185 1.32231 0.89929 1.24780 0.98511 0.96522 0.99511 1.69767 1.33928 1.09812 1.42691 0.86019 0.84192 0.77857 0.77596 1.20290 1.21513 1.21458 1.22081 0.88130 0.94205 0.98298 0.92616 0.92629 0.92774 0.91907 0.91182 0.91024 0.90309 0.74052 0.84446 0.86276 0.92955 0.88828 0.92897 0.85824 0.91686 0.88471 0.86261 0.95756 0.93306 0.93315 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.14 -1.64 6.24 -26.73 -0.17 -1.81 16 3 C 0.13 1.63 5.65 -4.04 -0.02 1.61 16 4 N -0.64 -10.33 2.53 -165.13 -0.42 -10.75 16 5 C 0.60 11.30 5.48 -12.32 -0.07 11.23 16 6 O -0.52 -10.93 16.94 5.32 0.09 -10.84 16 7 C -0.14 -2.71 5.19 -104.99 -0.54 -3.25 16 8 C -0.17 -3.29 3.72 -39.17 -0.15 -3.43 16 9 C -0.08 -1.58 10.03 -39.66 -0.40 -1.97 16 10 C -0.19 -3.28 9.03 -39.35 -0.36 -3.64 16 11 C 0.09 1.55 6.68 -39.27 -0.26 1.29 16 12 O -0.32 -5.19 10.49 -19.46 -0.20 -5.39 16 13 C 0.03 0.35 9.81 101.05 0.99 1.34 16 14 C -0.11 -1.99 9.55 -39.02 -0.37 -2.36 16 15 C 0.14 2.25 3.37 -66.10 -0.22 2.02 16 16 H 0.10 1.41 7.98 -51.93 -0.41 1.00 16 17 C -0.19 -3.22 5.88 -24.47 -0.14 -3.37 16 18 C 0.14 2.86 5.26 -2.41 -0.01 2.85 16 19 N -0.58 -12.89 1.99 -205.19 -0.41 -13.30 16 20 C -0.24 -5.85 10.21 -15.06 -0.15 -6.01 16 21 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 22 C 0.00 0.08 5.49 -17.43 -0.10 -0.01 16 23 N -0.92 -23.37 10.09 55.49 0.56 -22.81 16 24 Si 0.91 20.39 29.55 -169.99 -5.02 15.36 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.10 1.93 5.74 -3.07 -0.02 1.92 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.80 7.63 -51.93 -0.40 0.41 16 34 H 0.07 0.79 8.02 -51.93 -0.42 0.38 16 35 H 0.08 1.06 7.50 -51.93 -0.39 0.67 16 36 H 0.25 4.89 0.00 0.00 0.00 4.89 16 37 H 0.14 2.94 8.06 -52.48 -0.42 2.52 16 38 H 0.12 1.80 6.28 -52.49 -0.33 1.47 16 39 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 42 H 0.12 2.25 8.00 -52.48 -0.42 1.83 16 43 H 0.06 0.96 7.75 -51.93 -0.40 0.56 16 44 H 0.10 1.77 4.53 -52.69 -0.24 1.53 16 45 H 0.12 2.79 5.87 -51.93 -0.30 2.48 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 48 H 0.05 1.05 4.49 -51.93 -0.23 0.82 16 49 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -28.02 374.71 -8.65 -36.66 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -7.27 Total: 9.98 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -1.62 Total: -4.56 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.26 Total: -46.85 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: -0.11 Total: -16.23 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.02 -8.65 -36.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567689076.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.712 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds