Wall clock time and date at job start Tue Mar 31 2020 16:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47013 * 2 1 4 4 N 1.46497 * 109.47388 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00553 * 97.41150 * 4 3 2 6 6 O 1.21548 * 119.99377 * 44.62677 * 5 4 3 7 7 C 1.47856 * 120.00296 * 224.63470 * 5 4 3 8 8 C 1.39603 * 120.11420 * 325.30173 * 7 5 4 9 9 C 1.37970 * 119.96213 * 179.68408 * 8 7 5 10 10 C 1.38284 * 120.20835 * 0.57241 * 9 8 7 11 11 C 1.38811 * 120.23582 * 359.44958 * 10 9 8 12 12 O 1.35910 * 119.98556 * 180.27860 * 11 10 9 13 13 C 1.42902 * 117.00104 * 359.97438 * 12 11 10 14 14 C 1.38497 * 120.03272 * 0.24957 * 11 10 9 15 15 C 1.46504 * 119.99893 * 277.41681 * 4 3 2 16 16 H 1.09007 * 110.63848 * 334.90783 * 15 4 3 17 17 C 1.55150 * 110.72387 * 98.05060 * 15 4 3 18 18 C 1.55121 * 101.48644 * 153.73337 * 17 15 4 19 19 N 1.47425 * 104.94308 * 323.22493 * 18 17 15 20 20 C 1.36933 * 125.64636 * 203.96475 * 19 18 17 21 21 H 1.07998 * 120.00225 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00167 * 0.04195 * 20 19 18 23 23 N 1.31620 * 120.00256 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00014 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47135 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46725 * 120.00255 * 24 22 20 27 27 H 1.48497 * 109.47202 * 240.00333 * 24 22 20 28 28 C 1.47016 * 108.70319 * 24.00432 * 19 18 17 29 29 H 1.08997 * 109.46609 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47159 * 300.00266 * 1 2 3 31 31 H 1.09001 * 109.46851 * 60.00557 * 1 2 3 32 32 H 1.08994 * 109.47521 * 239.99452 * 2 1 3 33 33 H 1.09001 * 109.46851 * 119.99443 * 2 1 3 34 34 H 1.08999 * 109.47376 * 59.99866 * 3 2 1 35 35 H 1.09002 * 109.46903 * 299.99994 * 3 2 1 36 36 H 1.08003 * 120.02140 * 359.97438 * 8 7 5 37 37 H 1.08003 * 119.89504 * 180.29492 * 9 8 7 38 38 H 1.07999 * 119.88340 * 179.71964 * 10 9 8 39 39 H 1.09005 * 109.46938 * 60.00331 * 13 12 11 40 40 H 1.08990 * 109.47299 * 180.02562 * 13 12 11 41 41 H 1.09000 * 109.47127 * 300.00348 * 13 12 11 42 42 H 1.08003 * 120.10483 * 180.02562 * 14 11 10 43 43 H 1.08997 * 111.00664 * 271.94351 * 17 15 4 44 44 H 1.09001 * 111.00693 * 35.79238 * 17 15 4 45 45 H 1.08999 * 110.42227 * 204.29258 * 18 17 15 46 46 H 1.09004 * 110.30158 * 82.09331 * 18 17 15 47 47 H 0.96994 * 120.00064 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.87917 * 239.52269 * 28 19 18 49 49 H 1.09001 * 109.88507 * 118.35800 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1785 1.5934 -1.1583 6 8 3.8331 2.4430 -1.9559 7 6 5.3372 0.7252 -1.4580 8 6 6.1808 0.3030 -0.4289 9 6 7.2573 -0.5124 -0.7113 10 6 7.5111 -0.9040 -2.0130 11 6 6.6781 -0.4887 -3.0428 12 8 6.9290 -0.8812 -4.3196 13 6 8.0668 -1.7200 -4.5288 14 6 5.5910 0.3248 -2.7698 15 6 4.2380 1.2787 1.2572 16 1 3.6303 1.6049 2.1014 17 6 4.6887 -0.1944 1.4421 18 6 5.9346 -0.0246 2.3504 19 7 6.5831 1.2126 1.8789 20 6 7.9063 1.5290 2.0339 21 1 8.2862 2.4648 1.6513 22 6 8.7595 0.6469 2.6826 23 7 8.2969 -0.4940 3.1482 24 14 10.5648 1.0783 2.8935 25 1 10.8305 2.4069 2.2857 26 1 10.8978 1.1207 4.3401 27 1 11.4010 0.0506 2.2229 28 6 5.5737 2.0506 1.2154 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 5.9881 0.6106 0.5883 37 1 7.9065 -0.8423 0.0864 38 1 8.3579 -1.5386 -2.2287 39 1 7.9496 -2.6406 -3.9571 40 1 8.1524 -1.9586 -5.5888 41 1 8.9667 -1.2002 -4.1999 42 1 4.9419 0.6482 -3.5701 43 1 3.9157 -0.7800 1.9397 44 1 4.9615 -0.6424 0.4865 45 1 6.6081 -0.8738 2.2349 46 1 5.6316 0.0793 3.3924 47 1 8.8930 -1.1101 3.6018 48 1 5.8646 2.2322 0.1807 49 1 5.4714 2.9975 1.7455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567689076.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:25 Heat of formation + Delta-G solvation = 70.228496 kcal Electronic energy + Delta-G solvation = -30914.906794 eV Core-core repulsion = 27040.068880 eV Total energy + Delta-G solvation = -3874.837914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -42.93055 -40.59819 -39.82814 -37.83331 -36.83375 -34.80327 -33.42180 -32.10376 -31.15648 -30.96512 -29.15558 -28.08647 -27.11118 -26.55577 -24.45727 -23.54540 -22.49087 -22.37869 -21.92298 -20.14382 -19.24322 -18.99694 -18.13266 -17.55840 -17.14169 -16.78763 -16.66318 -16.56060 -16.24967 -15.59681 -15.40837 -15.22823 -14.93497 -14.69581 -14.47516 -14.31836 -14.08559 -13.79053 -13.63014 -13.29470 -13.13211 -13.04928 -12.98014 -12.87492 -12.78654 -12.58538 -12.32340 -12.06137 -12.01633 -11.92032 -11.86487 -11.76708 -11.62561 -11.45607 -11.07317 -10.95420 -10.65416 -9.99054 -9.46260 -8.94281 -8.83314 -7.79916 -5.26399 -0.09847 0.59849 1.41495 1.47867 1.51513 1.58802 1.88653 2.41263 2.48378 2.87846 3.30391 3.43344 3.54792 3.70788 3.87742 3.89637 4.03428 4.11848 4.16257 4.18279 4.29324 4.37636 4.44260 4.49860 4.55805 4.58683 4.63262 4.68900 4.73228 4.74896 4.75909 4.87388 4.92662 5.01745 5.03061 5.12601 5.24821 5.29422 5.34780 5.45194 5.50315 5.53799 5.65107 5.74613 5.76908 5.82380 6.04379 6.22966 6.30120 6.46610 6.88590 7.05933 7.65751 8.23959 9.19451 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008826 B = 0.005845 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3171.528404 B = 4789.533399 C = 7025.308337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.634 5.634 5 C 0.597 3.403 6 O -0.548 6.548 7 C -0.149 4.149 8 C -0.175 4.175 9 C -0.095 4.095 10 C -0.181 4.181 11 C 0.093 3.907 12 O -0.334 6.334 13 C 0.019 3.981 14 C -0.117 4.117 15 C 0.148 3.852 16 H 0.128 0.872 17 C -0.172 4.172 18 C 0.143 3.857 19 N -0.588 5.588 20 C -0.244 4.244 21 H 0.073 0.927 22 C -0.034 4.034 23 N -0.930 5.930 24 Si 0.963 3.037 25 H -0.276 1.276 26 H -0.291 1.291 27 H -0.289 1.289 28 C 0.096 3.904 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.246 0.754 37 H 0.115 0.885 38 H 0.144 0.856 39 H 0.063 0.937 40 H 0.125 0.875 41 H 0.057 0.943 42 H 0.126 0.874 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.012 0.988 47 H 0.252 0.748 48 H 0.031 0.969 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.612 -3.945 -6.608 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.368 5.368 5 C 0.388 3.612 6 O -0.425 6.425 7 C -0.153 4.153 8 C -0.192 4.192 9 C -0.113 4.113 10 C -0.200 4.200 11 C 0.049 3.951 12 O -0.249 6.249 13 C -0.075 4.075 14 C -0.137 4.137 15 C 0.044 3.956 16 H 0.146 0.854 17 C -0.211 4.211 18 C 0.019 3.981 19 N -0.314 5.314 20 C -0.373 4.373 21 H 0.091 0.909 22 C -0.228 4.228 23 N -0.578 5.578 24 Si 0.792 3.208 25 H -0.201 1.201 26 H -0.218 1.218 27 H -0.216 1.216 28 C -0.029 4.029 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.258 0.742 37 H 0.133 0.867 38 H 0.162 0.838 39 H 0.081 0.919 40 H 0.143 0.857 41 H 0.076 0.924 42 H 0.143 0.857 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.030 0.970 47 H 0.062 0.938 48 H 0.049 0.951 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.728 -3.485 -7.103 12.539 hybrid contribution 1.688 0.062 0.169 1.698 sum -8.040 -3.423 -6.934 11.156 Atomic orbital electron populations 1.21663 0.93450 1.02511 1.02504 1.21959 0.97328 0.96182 1.02270 1.21703 0.76607 0.97733 1.03978 1.47370 1.07036 1.77361 1.05039 1.18295 0.81528 0.80520 0.80842 1.90667 1.68578 1.32034 1.51245 1.20168 0.98681 1.02396 0.94009 1.26111 0.92329 0.93282 1.07470 1.21045 0.97499 0.97238 0.95553 1.21674 1.01225 1.03949 0.93103 1.18670 0.95365 0.97103 0.84008 1.86007 1.48838 1.66261 1.23779 1.23324 0.86275 0.93261 1.04669 1.20358 0.97775 0.99783 0.95780 1.22167 0.91855 0.95495 0.86045 0.85418 1.24134 0.98849 0.96418 1.01741 1.22086 0.91769 0.90634 0.93588 1.44939 1.04824 1.17998 1.63686 1.19211 0.83322 1.02812 1.31919 0.90885 1.25304 1.01116 0.96618 0.99786 1.69940 1.34465 1.10215 1.43138 0.85250 0.80974 0.77479 0.77048 1.20123 1.21785 1.21578 1.22143 0.89319 0.94550 0.96883 0.91842 0.91231 0.92686 0.93636 0.90835 0.88349 0.90983 0.74177 0.86660 0.83794 0.91879 0.85722 0.92391 0.85651 0.88607 0.89549 0.88892 0.96963 0.93762 0.95136 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.91 71.98 0.71 -1.48 16 2 C -0.14 -2.82 6.24 30.59 0.19 -2.63 16 3 C 0.12 2.84 5.65 86.38 0.49 3.32 16 4 N -0.63 -19.52 2.53 -794.62 -2.01 -21.53 16 5 C 0.60 22.46 5.48 86.79 0.48 22.94 16 6 O -0.55 -23.08 16.94 -3.87 -0.07 -23.15 16 7 C -0.15 -5.81 5.19 -20.10 -0.10 -5.91 16 8 C -0.17 -7.03 3.72 22.54 0.08 -6.95 16 9 C -0.10 -3.84 10.03 22.22 0.22 -3.61 16 10 C -0.18 -6.29 9.03 22.42 0.20 -6.09 16 11 C 0.09 3.26 6.68 22.47 0.15 3.41 16 12 O -0.33 -10.16 10.49 -92.54 -0.97 -11.13 16 13 C 0.02 0.39 9.81 113.37 1.11 1.50 16 14 C -0.12 -4.41 9.55 22.63 0.22 -4.20 16 15 C 0.15 4.65 3.37 46.18 0.16 4.81 16 16 H 0.13 3.30 7.98 -2.38 -0.02 3.28 16 17 C -0.17 -5.67 5.88 32.06 0.19 -5.48 16 18 C 0.14 6.01 5.26 86.93 0.46 6.47 16 19 N -0.59 -26.63 1.99 -803.10 -1.60 -28.22 16 20 C -0.24 -12.39 10.21 84.03 0.86 -11.53 16 21 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 22 C -0.03 -1.70 5.49 84.86 0.47 -1.24 16 23 N -0.93 -48.42 10.09 21.65 0.22 -48.20 16 24 Si 0.96 42.35 29.55 68.60 2.03 44.38 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 27 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 28 C 0.10 3.78 5.74 86.73 0.50 4.28 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.45 7.63 -2.39 -0.02 1.43 16 34 H 0.10 1.82 8.02 -2.39 -0.02 1.80 16 35 H 0.07 1.83 7.50 -2.39 -0.02 1.81 16 36 H 0.25 9.81 0.00 0.00 0.00 9.81 16 37 H 0.12 5.15 8.06 -2.91 -0.02 5.12 16 38 H 0.14 4.16 6.28 -2.91 -0.02 4.14 16 39 H 0.06 1.17 7.66 -2.38 -0.02 1.16 16 40 H 0.12 1.78 8.14 -2.39 -0.02 1.77 16 41 H 0.06 1.15 7.66 -2.39 -0.02 1.13 16 42 H 0.13 4.59 8.00 -2.91 -0.02 4.57 16 43 H 0.10 2.58 7.75 -2.39 -0.02 2.56 16 44 H 0.09 3.11 4.53 -3.10 -0.01 3.10 16 45 H 0.09 4.46 5.87 -2.39 -0.01 4.44 16 46 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 47 H 0.25 12.86 8.31 -92.71 -0.77 12.09 16 48 H 0.03 1.35 4.49 -2.39 -0.01 1.34 16 49 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -61.65 374.71 4.94 -56.71 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: 0.96 Total: 33.55 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: 6.37 Total: -2.40 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -3.38 Total: -97.95 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -1.04 Total: -34.28 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -61.65 4.94 -56.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567689076.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.939 kcal (2) G-P(sol) polarization free energy of solvation -61.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds