Wall clock time and date at job start Tue Mar 31 2020 16:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47260 * 2 1 4 4 N 1.46498 * 109.47357 * 180.02562 * 3 2 1 5 5 C 1.34783 * 119.99907 * 252.15262 * 4 3 2 6 6 O 1.21549 * 119.99519 * 184.30920 * 5 4 3 7 7 C 1.47854 * 120.00059 * 4.30604 * 5 4 3 8 8 C 1.39602 * 120.11955 * 27.17565 * 7 5 4 9 9 C 1.37959 * 119.96776 * 179.69959 * 8 7 5 10 10 C 1.38295 * 120.20578 * 0.57604 * 9 8 7 11 11 C 1.38801 * 120.23690 * 359.72298 * 10 9 8 12 12 O 1.35910 * 119.98535 * 179.97438 * 11 10 9 13 13 C 1.42900 * 116.99992 * 359.97438 * 12 11 10 14 14 C 1.38497 * 120.03329 * 359.97418 * 11 10 9 15 15 C 1.46502 * 120.00161 * 72.14889 * 4 3 2 16 16 H 1.08994 * 110.91531 * 9.98862 * 15 4 3 17 17 C 1.55165 * 111.00215 * 246.09009 * 15 4 3 18 18 C 1.54320 * 102.94278 * 277.42642 * 17 15 4 19 19 N 1.47028 * 107.27157 * 337.80669 * 18 17 15 20 20 C 1.36934 * 125.64679 * 178.97319 * 19 18 17 21 21 H 1.08003 * 119.99905 * 179.97438 * 20 19 18 22 22 C 1.38805 * 120.00102 * 359.97438 * 20 19 18 23 23 N 1.31620 * 120.00186 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99958 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47089 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46890 * 119.99828 * 24 22 20 27 27 H 1.48501 * 109.47225 * 239.99883 * 24 22 20 28 28 C 1.47423 * 108.70174 * 358.94557 * 19 18 17 29 29 H 1.09000 * 109.47705 * 59.99530 * 1 2 3 30 30 H 1.08999 * 109.47567 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46906 * 299.99571 * 1 2 3 32 32 H 1.09004 * 109.46923 * 240.00009 * 2 1 3 33 33 H 1.08998 * 109.47418 * 120.00929 * 2 1 3 34 34 H 1.08998 * 109.47092 * 60.00590 * 3 2 1 35 35 H 1.09001 * 109.47648 * 300.00014 * 3 2 1 36 36 H 1.08000 * 120.01594 * 359.97438 * 8 7 5 37 37 H 1.08005 * 119.89712 * 180.29859 * 9 8 7 38 38 H 1.07994 * 119.87965 * 179.70207 * 10 9 8 39 39 H 1.08999 * 109.47198 * 179.97438 * 13 12 11 40 40 H 1.09004 * 109.46824 * 300.00024 * 13 12 11 41 41 H 1.09004 * 109.47021 * 59.99626 * 13 12 11 42 42 H 1.07999 * 120.10955 * 180.02562 * 14 11 10 43 43 H 1.09007 * 110.71720 * 159.06157 * 17 15 4 44 44 H 1.08998 * 110.71890 * 35.79402 * 17 15 4 45 45 H 1.08994 * 109.88255 * 97.22742 * 18 17 15 46 46 H 1.09005 * 109.88272 * 218.23920 * 18 17 15 47 47 H 0.97006 * 119.99833 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.36849 * 142.96782 * 28 19 18 49 49 H 1.09006 * 110.36097 * 265.28616 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1793 1.8000 1.1102 6 8 5.3922 1.8758 1.0868 7 6 3.4437 2.1002 2.3572 8 6 2.2019 1.5094 2.5974 9 6 1.5210 1.7869 3.7648 10 6 2.0593 2.6585 4.6938 11 6 3.2905 3.2556 4.4608 12 8 3.8144 4.1118 5.3771 13 6 3.0436 4.3515 6.5562 14 6 3.9854 2.9792 3.2951 15 6 4.2370 1.0537 -1.2086 16 1 3.5629 0.9650 -2.0605 17 6 5.0236 -0.2644 -0.9822 18 6 6.3135 0.2181 -0.2859 19 7 6.4853 1.6392 -0.6215 20 6 7.5014 2.4456 -0.1829 21 1 7.5391 3.4810 -0.4878 22 6 8.4830 1.9323 0.6536 23 7 8.4369 0.6706 1.0256 24 14 9.8696 3.0322 1.2513 25 1 9.6934 4.3976 0.6947 26 1 9.8462 3.0962 2.7348 27 1 11.1711 2.4774 0.8003 28 6 5.3828 2.0520 -1.5089 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 1.7764 0.8320 1.8718 37 1 0.5626 1.3254 3.9517 38 1 1.5196 2.8757 5.6037 39 1 3.5749 5.0508 7.2017 40 1 2.0777 4.7740 6.2792 41 1 2.8903 3.4120 7.0873 42 1 4.9436 3.4427 3.1128 43 1 5.2550 -0.7437 -1.9335 44 1 4.4653 -0.9403 -0.3344 45 1 6.2182 0.1009 0.7935 46 1 7.1668 -0.3562 -0.6471 47 1 9.1227 0.3120 1.6105 48 1 5.0697 3.0699 -1.2766 49 1 5.6877 1.9768 -2.5527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567689077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:32 Heat of formation + Delta-G solvation = 57.914193 kcal Electronic energy + Delta-G solvation = -30730.290949 eV Core-core repulsion = 26854.919047 eV Total energy + Delta-G solvation = -3875.371902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -40.53252 -39.49440 -37.41038 -36.02200 -35.61114 -32.81461 -31.60012 -30.88020 -30.10583 -28.85031 -27.39475 -27.18388 -25.85009 -24.35322 -23.29253 -22.28718 -21.54772 -20.82176 -19.75586 -18.75579 -17.47807 -16.80885 -16.46902 -16.18849 -16.12100 -15.74994 -15.07869 -14.69610 -14.43291 -14.29447 -14.03893 -13.60465 -13.51359 -13.44992 -13.25667 -12.81842 -12.56032 -12.33745 -12.20012 -11.84376 -11.75457 -11.65157 -11.60494 -11.38486 -11.15111 -11.00458 -10.79927 -10.70623 -10.63831 -10.61049 -10.52579 -9.86373 -9.84458 -9.60417 -9.33928 -8.80596 -8.61076 -8.27718 -8.08382 -7.74057 -6.15767 -5.33042 -2.57267 1.15885 1.51583 3.18606 3.44653 3.59786 3.62976 3.64816 3.67028 4.17802 4.77460 4.79131 4.80489 4.87811 4.97304 5.01318 5.03853 5.08991 5.25156 5.28413 5.35217 5.44944 5.48361 5.56213 5.60204 5.64733 5.71676 5.79219 5.80276 5.92247 5.97672 6.02027 6.08638 6.14445 6.23555 6.33171 6.35983 6.45005 6.60018 6.61868 6.66466 6.71628 6.77332 6.86704 7.39085 7.44500 7.85841 7.97390 8.10456 8.21240 8.63779 9.22066 9.59508 10.21875 10.88053 11.80484 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008865 B = 0.005854 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.633875 B = 4782.138840 C = 7442.558495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.150 4.150 3 C 0.087 3.913 4 N -0.606 5.606 5 C 0.495 3.505 6 O -0.387 6.387 7 C -0.071 4.071 8 C -0.160 4.160 9 C -0.094 4.094 10 C -0.201 4.201 11 C 0.118 3.882 12 O -0.315 6.315 13 C 0.029 3.971 14 C -0.097 4.097 15 C 0.135 3.865 16 H 0.081 0.919 17 C -0.160 4.160 18 C 0.191 3.809 19 N -0.565 5.565 20 C -0.188 4.188 21 H 0.067 0.933 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.897 3.103 25 H -0.284 1.284 26 H -0.295 1.295 27 H -0.296 1.296 28 C 0.130 3.870 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.153 0.847 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.143 0.857 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.029 0.971 47 H 0.243 0.757 48 H 0.034 0.966 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.898 0.907 3.889 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C -0.037 4.037 4 N -0.343 5.343 5 C 0.279 3.721 6 O -0.252 6.252 7 C -0.075 4.075 8 C -0.178 4.178 9 C -0.112 4.112 10 C -0.220 4.220 11 C 0.073 3.927 12 O -0.229 6.229 13 C -0.066 4.066 14 C -0.116 4.116 15 C 0.031 3.969 16 H 0.099 0.901 17 C -0.199 4.199 18 C 0.067 3.933 19 N -0.291 5.291 20 C -0.317 4.317 21 H 0.085 0.915 22 C -0.202 4.202 23 N -0.571 5.571 24 Si 0.730 3.270 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.224 1.224 28 C 0.002 3.998 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.082 0.918 36 H 0.170 0.830 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.160 0.840 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.053 0.947 49 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -19.764 1.080 4.021 20.197 hybrid contribution 0.265 0.441 0.730 0.893 sum -19.498 1.521 4.750 20.126 Atomic orbital electron populations 1.21738 0.95452 1.01785 1.01888 1.22070 0.95709 0.97986 1.03039 1.22241 0.81309 0.96418 1.03707 1.47640 1.04894 1.69739 1.12020 1.18588 0.89027 0.81480 0.83007 1.91677 1.09745 1.42595 1.81146 1.20178 0.94363 0.96943 0.95974 1.22150 0.94847 1.02386 0.98436 1.20830 0.99727 0.97350 0.93321 1.21278 0.96485 1.02452 1.01738 1.18882 0.92485 0.91393 0.89912 1.86127 1.46729 1.60637 1.29385 1.23022 0.96430 1.01384 0.85811 1.20563 1.00792 0.99113 0.91123 1.22255 0.93033 0.96162 0.85454 0.90122 1.23392 0.99943 0.96043 1.00543 1.21088 0.90023 0.84228 0.98006 1.44121 1.24883 1.07100 1.52955 1.18817 0.98566 0.91997 1.22284 0.91541 1.24545 0.98974 0.96151 1.00576 1.69957 1.34993 1.12213 1.39940 0.86235 0.82674 0.79648 0.78444 1.21009 1.22287 1.22427 1.21761 0.88463 0.95647 0.93907 0.92563 0.92590 0.92649 0.91123 0.91215 0.88051 0.91828 0.82978 0.85812 0.85729 0.88384 0.92853 0.92794 0.83957 0.92133 0.92480 0.92551 0.95256 0.94677 0.94746 0.96084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.88 37.16 0.37 -0.79 16 2 C -0.15 -1.52 5.17 -26.74 -0.14 -1.66 16 3 C 0.09 1.04 4.83 -4.05 -0.02 1.02 16 4 N -0.61 -10.10 2.61 -164.77 -0.43 -10.53 16 5 C 0.50 10.01 6.93 -12.32 -0.09 9.93 16 6 O -0.39 -9.89 8.61 5.32 0.05 -9.84 16 7 C -0.07 -1.24 5.50 -104.99 -0.58 -1.82 16 8 C -0.16 -2.17 7.42 -39.18 -0.29 -2.46 16 9 C -0.09 -1.10 10.03 -39.66 -0.40 -1.49 16 10 C -0.20 -2.47 9.03 -39.35 -0.36 -2.83 16 11 C 0.12 1.82 6.68 -39.28 -0.26 1.55 16 12 O -0.32 -4.64 10.49 -19.46 -0.20 -4.84 16 13 C 0.03 0.27 9.81 101.05 0.99 1.26 16 14 C -0.10 -1.76 9.53 -39.02 -0.37 -2.13 16 15 C 0.14 2.38 3.51 -65.78 -0.23 2.15 16 16 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 17 C -0.16 -3.10 6.52 -24.89 -0.16 -3.26 16 18 C 0.19 4.92 4.21 -3.06 -0.01 4.91 16 19 N -0.57 -15.07 1.73 -170.07 -0.29 -15.36 16 20 C -0.19 -5.56 8.76 -15.06 -0.13 -5.69 16 21 H 0.07 1.96 7.83 -52.48 -0.41 1.54 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 23 N -0.92 -29.00 10.31 55.49 0.57 -28.43 16 24 Si 0.90 23.99 29.55 -169.99 -5.02 18.97 16 25 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 27 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 28 C 0.13 2.81 6.19 -2.53 -0.02 2.80 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 8.10 -51.92 -0.42 -0.04 16 32 H 0.07 0.75 8.00 -51.93 -0.42 0.34 16 33 H 0.07 0.78 6.84 -51.93 -0.36 0.43 16 34 H 0.10 1.19 4.14 -51.93 -0.22 0.98 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.15 1.79 2.72 -52.49 -0.14 1.65 16 37 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.12 1.17 6.28 -52.49 -0.33 0.84 16 39 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 41 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 42 H 0.14 2.94 7.88 -52.49 -0.41 2.52 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.66 5.81 -51.93 -0.30 1.35 16 46 H 0.03 0.85 7.51 -51.93 -0.39 0.46 16 47 H 0.24 7.51 8.31 -40.82 -0.34 7.17 16 48 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -35.52 374.08 -9.03 -44.56 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.55 Total: -1.33 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -1.79 Total: 1.16 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: -0.15 Total: -54.32 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.16 Total: -14.68 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.02 Total: 18.97 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.52 -9.03 -44.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567689077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.471 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds