Wall clock time and date at job start Tue Mar 31 2020 16:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47260 * 2 1 4 4 N 1.46498 * 109.47357 * 180.02562 * 3 2 1 5 5 C 1.34783 * 119.99907 * 252.15262 * 4 3 2 6 6 O 1.21549 * 119.99519 * 184.30920 * 5 4 3 7 7 C 1.47854 * 120.00059 * 4.30604 * 5 4 3 8 8 C 1.39602 * 120.11955 * 27.17565 * 7 5 4 9 9 C 1.37959 * 119.96776 * 179.69959 * 8 7 5 10 10 C 1.38295 * 120.20578 * 0.57604 * 9 8 7 11 11 C 1.38801 * 120.23690 * 359.72298 * 10 9 8 12 12 O 1.35910 * 119.98535 * 179.97438 * 11 10 9 13 13 C 1.42900 * 116.99992 * 359.97438 * 12 11 10 14 14 C 1.38497 * 120.03329 * 359.97418 * 11 10 9 15 15 C 1.46502 * 120.00161 * 72.14889 * 4 3 2 16 16 H 1.08994 * 110.91531 * 9.98862 * 15 4 3 17 17 C 1.55165 * 111.00215 * 246.09009 * 15 4 3 18 18 C 1.54320 * 102.94278 * 277.42642 * 17 15 4 19 19 N 1.47028 * 107.27157 * 337.80669 * 18 17 15 20 20 C 1.36934 * 125.64679 * 178.97319 * 19 18 17 21 21 H 1.08003 * 119.99905 * 179.97438 * 20 19 18 22 22 C 1.38805 * 120.00102 * 359.97438 * 20 19 18 23 23 N 1.31620 * 120.00186 * 359.97438 * 22 20 19 24 24 Si 1.86810 * 119.99958 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47089 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.46890 * 119.99828 * 24 22 20 27 27 H 1.48501 * 109.47225 * 239.99883 * 24 22 20 28 28 C 1.47423 * 108.70174 * 358.94557 * 19 18 17 29 29 H 1.09000 * 109.47705 * 59.99530 * 1 2 3 30 30 H 1.08999 * 109.47567 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46906 * 299.99571 * 1 2 3 32 32 H 1.09004 * 109.46923 * 240.00009 * 2 1 3 33 33 H 1.08998 * 109.47418 * 120.00929 * 2 1 3 34 34 H 1.08998 * 109.47092 * 60.00590 * 3 2 1 35 35 H 1.09001 * 109.47648 * 300.00014 * 3 2 1 36 36 H 1.08000 * 120.01594 * 359.97438 * 8 7 5 37 37 H 1.08005 * 119.89712 * 180.29859 * 9 8 7 38 38 H 1.07994 * 119.87965 * 179.70207 * 10 9 8 39 39 H 1.08999 * 109.47198 * 179.97438 * 13 12 11 40 40 H 1.09004 * 109.46824 * 300.00024 * 13 12 11 41 41 H 1.09004 * 109.47021 * 59.99626 * 13 12 11 42 42 H 1.07999 * 120.10955 * 180.02562 * 14 11 10 43 43 H 1.09007 * 110.71720 * 159.06157 * 17 15 4 44 44 H 1.08998 * 110.71890 * 35.79402 * 17 15 4 45 45 H 1.08994 * 109.88255 * 97.22742 * 18 17 15 46 46 H 1.09005 * 109.88272 * 218.23920 * 18 17 15 47 47 H 0.97006 * 119.99833 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.36849 * 142.96782 * 28 19 18 49 49 H 1.09006 * 110.36097 * 265.28616 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1793 1.8000 1.1102 6 8 5.3922 1.8758 1.0868 7 6 3.4437 2.1002 2.3572 8 6 2.2019 1.5094 2.5974 9 6 1.5210 1.7869 3.7648 10 6 2.0593 2.6585 4.6938 11 6 3.2905 3.2556 4.4608 12 8 3.8144 4.1118 5.3771 13 6 3.0436 4.3515 6.5562 14 6 3.9854 2.9792 3.2951 15 6 4.2370 1.0537 -1.2086 16 1 3.5629 0.9650 -2.0605 17 6 5.0236 -0.2644 -0.9822 18 6 6.3135 0.2181 -0.2859 19 7 6.4853 1.6392 -0.6215 20 6 7.5014 2.4456 -0.1829 21 1 7.5391 3.4810 -0.4878 22 6 8.4830 1.9323 0.6536 23 7 8.4369 0.6706 1.0256 24 14 9.8696 3.0322 1.2513 25 1 9.6934 4.3976 0.6947 26 1 9.8462 3.0962 2.7348 27 1 11.1711 2.4774 0.8003 28 6 5.3828 2.0520 -1.5089 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 1.6767 1.9562 0.8900 35 1 1.6767 1.9564 -0.8900 36 1 1.7764 0.8320 1.8718 37 1 0.5626 1.3254 3.9517 38 1 1.5196 2.8757 5.6037 39 1 3.5749 5.0508 7.2017 40 1 2.0777 4.7740 6.2792 41 1 2.8903 3.4120 7.0873 42 1 4.9436 3.4427 3.1128 43 1 5.2550 -0.7437 -1.9335 44 1 4.4653 -0.9403 -0.3344 45 1 6.2182 0.1009 0.7935 46 1 7.1668 -0.3562 -0.6471 47 1 9.1227 0.3120 1.6105 48 1 5.0697 3.0699 -1.2766 49 1 5.6877 1.9768 -2.5527 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567689077.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:31 Heat of formation + Delta-G solvation = 35.208983 kcal Electronic energy + Delta-G solvation = -30731.275521 eV Core-core repulsion = 26854.919047 eV Total energy + Delta-G solvation = -3876.356474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -41.82496 -40.72827 -38.71582 -37.44848 -37.01645 -34.45288 -33.11016 -32.05226 -31.38959 -30.69047 -28.91302 -28.19094 -26.84603 -26.40696 -24.64601 -23.36389 -22.40284 -22.25112 -21.73084 -20.03857 -18.94095 -18.40568 -17.86666 -17.45158 -17.32978 -16.72403 -16.60947 -16.33481 -16.05740 -15.66312 -15.49172 -15.25619 -14.68989 -14.44134 -14.38419 -13.88649 -13.79534 -13.66759 -13.55109 -13.25954 -13.15276 -13.05099 -12.85237 -12.75500 -12.71678 -12.44286 -12.15012 -12.03904 -11.95850 -11.93102 -11.86344 -11.66226 -11.58378 -11.38077 -11.29554 -10.55838 -10.21177 -9.94952 -9.29262 -9.17461 -8.27543 -7.63960 -4.85844 -0.01864 0.40644 1.38219 1.41825 1.49309 2.06741 2.16676 2.48391 2.58723 2.89629 3.54474 3.65107 3.82833 3.85296 3.98654 4.02137 4.07809 4.21646 4.24292 4.27506 4.32059 4.38796 4.39042 4.46683 4.51445 4.58966 4.69589 4.71758 4.76365 4.81751 4.91983 4.93128 4.98666 5.06142 5.09531 5.17132 5.23793 5.31974 5.33602 5.38179 5.43034 5.52969 5.61829 5.71594 5.83811 6.00058 6.05978 6.41985 6.43079 6.74211 7.32917 7.75272 8.04375 8.67824 9.48489 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008865 B = 0.005854 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.633875 B = 4782.138840 C = 7442.558495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C 0.081 3.919 4 N -0.600 5.600 5 C 0.488 3.512 6 O -0.460 6.460 7 C -0.094 4.094 8 C -0.152 4.152 9 C -0.077 4.077 10 C -0.186 4.186 11 C 0.110 3.890 12 O -0.348 6.348 13 C 0.017 3.983 14 C -0.138 4.138 15 C 0.149 3.851 16 H 0.135 0.865 17 C -0.143 4.143 18 C 0.204 3.796 19 N -0.579 5.579 20 C -0.185 4.185 21 H 0.059 0.941 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.955 3.045 25 H -0.272 1.272 26 H -0.305 1.305 27 H -0.292 1.292 28 C 0.123 3.877 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.165 0.835 39 H 0.113 0.887 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.011 0.989 46 H -0.016 1.016 47 H 0.232 0.768 48 H 0.021 0.979 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.119 0.532 3.865 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C -0.040 4.040 4 N -0.335 5.335 5 C 0.274 3.726 6 O -0.330 6.330 7 C -0.098 4.098 8 C -0.169 4.169 9 C -0.095 4.095 10 C -0.204 4.204 11 C 0.065 3.935 12 O -0.263 6.263 13 C -0.076 4.076 14 C -0.157 4.157 15 C 0.045 3.955 16 H 0.152 0.848 17 C -0.182 4.182 18 C 0.079 3.921 19 N -0.303 5.303 20 C -0.315 4.315 21 H 0.077 0.923 22 C -0.260 4.260 23 N -0.602 5.602 24 Si 0.786 3.214 25 H -0.197 1.197 26 H -0.234 1.234 27 H -0.219 1.219 28 C -0.004 4.004 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.192 0.808 37 H 0.193 0.807 38 H 0.182 0.818 39 H 0.131 0.869 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.029 0.971 46 H 0.002 0.998 47 H 0.042 0.958 48 H 0.039 0.961 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -25.071 0.724 3.956 25.391 hybrid contribution 1.738 0.652 0.810 2.025 sum -23.333 1.376 4.767 23.854 Atomic orbital electron populations 1.21712 0.92954 1.02693 1.03001 1.22002 0.97709 0.95952 1.02554 1.22573 0.77918 0.98370 1.05164 1.47721 1.07007 1.68198 1.10615 1.19177 0.88642 0.80259 0.84544 1.91634 1.12713 1.45947 1.82731 1.20018 0.96273 0.98559 0.94924 1.22372 0.92999 1.01711 0.99859 1.21407 1.00876 0.95727 0.91477 1.21727 0.94745 1.00859 1.03086 1.18943 0.93463 0.91925 0.89129 1.86090 1.48695 1.60606 1.30866 1.23396 0.97242 1.02772 0.84227 1.20367 0.99993 1.01451 0.93930 1.22211 0.92753 0.93129 0.87420 0.84773 1.23215 0.96773 0.97193 1.01042 1.20719 0.91676 0.83710 0.95985 1.44258 1.25489 1.07342 1.53230 1.19045 0.99110 0.92009 1.21329 0.92261 1.25224 1.01621 0.97455 1.01682 1.70206 1.35413 1.13679 1.40855 0.85309 0.80201 0.78750 0.77111 1.19697 1.23388 1.21949 1.21991 0.88746 0.96202 0.93437 0.91598 0.91818 0.91477 0.91093 0.92359 0.87575 0.89492 0.80848 0.80735 0.81777 0.86892 0.90641 0.91283 0.89071 0.89720 0.91169 0.97059 0.99842 0.95828 0.96064 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.88 71.98 0.71 -0.75 16 2 C -0.14 -2.32 5.17 30.59 0.16 -2.16 16 3 C 0.08 1.66 4.83 86.38 0.42 2.08 16 4 N -0.60 -19.36 2.61 -793.50 -2.07 -21.44 16 5 C 0.49 20.64 6.93 86.79 0.60 21.24 16 6 O -0.46 -25.48 8.61 -3.87 -0.03 -25.51 16 7 C -0.09 -3.40 5.50 -20.10 -0.11 -3.51 16 8 C -0.15 -3.73 7.42 22.53 0.17 -3.57 16 9 C -0.08 -1.44 10.03 22.22 0.22 -1.22 16 10 C -0.19 -3.94 9.03 22.42 0.20 -3.73 16 11 C 0.11 3.42 6.68 22.47 0.15 3.57 16 12 O -0.35 -10.43 10.49 -92.54 -0.97 -11.40 16 13 C 0.02 0.29 9.81 113.37 1.11 1.40 16 14 C -0.14 -5.43 9.53 22.63 0.22 -5.22 16 15 C 0.15 4.98 3.51 46.38 0.16 5.15 16 16 H 0.13 3.17 8.01 -2.39 -0.02 3.15 16 17 C -0.14 -5.45 6.52 31.78 0.21 -5.24 16 18 C 0.20 11.14 4.21 86.73 0.37 11.50 16 19 N -0.58 -32.52 1.73 -691.99 -1.20 -33.72 16 20 C -0.18 -11.63 8.76 84.03 0.74 -10.89 16 21 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 22 C -0.07 -4.41 5.49 84.86 0.47 -3.94 16 23 N -0.95 -64.30 10.31 21.65 0.22 -64.07 16 24 Si 0.95 52.50 29.55 68.60 2.03 54.53 16 25 H -0.27 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.31 -17.14 7.11 99.48 0.71 -16.44 16 27 H -0.29 -15.68 7.11 99.48 0.71 -14.98 16 28 C 0.12 5.36 6.19 86.85 0.54 5.90 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.54 8.10 -2.38 -0.02 0.52 16 32 H 0.07 1.18 8.00 -2.39 -0.02 1.16 16 33 H 0.06 1.10 6.84 -2.39 -0.02 1.08 16 34 H 0.11 2.12 4.14 -2.39 -0.01 2.11 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.17 3.44 2.72 -2.91 -0.01 3.43 16 37 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 38 H 0.16 2.17 6.28 -2.91 -0.02 2.15 16 39 H 0.11 1.48 8.14 -2.39 -0.02 1.47 16 40 H 0.08 0.91 7.66 -2.38 -0.02 0.89 16 41 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 42 H 0.09 4.39 7.88 -2.91 -0.02 4.37 16 43 H 0.08 2.84 8.14 -2.38 -0.02 2.82 16 44 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.01 0.72 5.81 -2.39 -0.01 0.71 16 46 H -0.02 -1.02 7.51 -2.38 -0.02 -1.04 16 47 H 0.23 15.47 8.31 -92.70 -0.77 14.70 16 48 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 Total: -1.00 -90.00 374.08 5.24 -84.76 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 0.95 Total: 6.23 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 6.32 Total: 10.62 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -3.05 Total: -119.22 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.00 Total: -36.91 kcal Atomic # 14 Polarization: 52.50 SS G_CDS: 2.03 Total: 54.53 kcal Total: -90.00 5.24 -84.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567689077.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.966 kcal (2) G-P(sol) polarization free energy of solvation -90.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds